BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00027132
         (866 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAB10503.1| retroelement pol polyprotein-like [Arabidopsis t...   128   2e-27
dbj|BAB09070.1| unnamed protein product [Arabidopsis thaliana] g...   120   5e-25
gb|AAD26943.1| putative retroelement pol polyprotein [Arabidopsi...   113   5e-23
gb|AAD25830.1| putative retroelement pol polyprotein [Arabidopsi...   112   8e-23
dbj|BAF00783.1| hypothetical protein [Arabidopsis thaliana]           110   5e-22

>dbj|BAB10503.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 1475

 Score =  128 bits (321), Expect = 2e-27
 Identities = 68/204 (33%), Positives = 114/204 (55%), Gaps = 13/204 (6%)
 Frame = +2

Query: 2   NSISDAIKRSVLFINSASEIWKQLEKRFSLTNGSRKYKLTKDLFALRQNTLSVNDYFTAM 181
           NS++  I +S+L  N A+EIWK L+ RF +TN  R Y+LT+ +++L+Q T+S++DY+TA+
Sbjct: 136 NSVTKQIYKSILRFNDAAEIWKDLDTRFHITNLPRSYQLTQQIWSLQQGTMSLSDYYTAL 195

Query: 182 SALWEEIDSMSTLPVIKTITTEITDFLQVVNTYKEESRLFQFLNGLNEVYGPQRSQLLMQ 361
             LW+++D  S +   K  T  I     +     E S++ +FL+GLNE Y   RSQ++M+
Sbjct: 196 KTLWDDLDGASCVSTCKNCTCCIATASMI-----EHSKIVKFLSGLNESYSTIRSQIIMK 250

Query: 362 VPLPTVDVACSALQQEESQRDILHNVLSLDTDISAMYGKGPQ-------------YQTDK 502
             +P +    + L Q+ SQR    N++++ T+ S      PQ              Q   
Sbjct: 251 KTIPDLAEIYNLLDQDHSQR----NIVTMPTNASTFNVSAPQSDQFAVNLAKSFGTQPKP 306

Query: 503 PVMCTNCGGKNHPSEKCWSVVGFP 574
            V C++CG   H ++ C+ + G+P
Sbjct: 307 KVQCSHCGYTGHNADTCYKIHGYP 330


>dbj|BAB09070.1| unnamed protein product [Arabidopsis thaliana]
           gi|26450382|dbj|BAC42306.1| putative retroelement pol
           polyprotein [Arabidopsis thaliana]
           gi|28973203|gb|AAO63926.1| unknown protein [Arabidopsis
           thaliana]
          Length = 357

 Score =  120 bits (300), Expect = 5e-25
 Identities = 64/200 (32%), Positives = 109/200 (54%), Gaps = 9/200 (4%)
 Frame = +2

Query: 2   NSISDAIKRSVLFINSASEIWKQLEKRFSLTNGSRKYKLTKDLFALRQNTLSVNDYFTAM 181
           NS++  I +S+L  N A+EIWK L+ RF +TN  R Y+LT+ +++L+Q  +S++DY+T +
Sbjct: 139 NSVTKQIYKSILRFNDAAEIWKDLDTRFHITNLPRSYQLTQQIWSLQQGNMSLSDYYTTL 198

Query: 182 SALWEEIDSMSTLPVIKTITTEITDFLQVVNTYKEESRLFQFLNGLNEVYGPQRSQLLMQ 361
             LW+++D  S +   +              +  E S++ +FL GLN+ Y   RSQ++M+
Sbjct: 199 KTLWDDLDGASCVNTCRNCKC-----CSATASVNEHSKIVKFLAGLNDFYSTIRSQIIMK 253

Query: 362 VPLPTVDVACSALQQEESQRDIL--------HNVLSLDTDISAMYGKGPQYQTDKP-VMC 514
             +P +    + L Q+ SQR+I+         NV  L  D  A+          KP V C
Sbjct: 254 KTIPDLAEIYNLLDQDHSQRNIVTNPTNASAFNVSILSNDQIAVNATRSFQPNSKPKVQC 313

Query: 515 TNCGGKNHPSEKCWSVVGFP 574
           ++CG   H ++ C+ + G+P
Sbjct: 314 SHCGYTGHTADTCYKIHGYP 333


>gb|AAD26943.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1454

 Score =  113 bits (283), Expect = 5e-23
 Identities = 86/318 (27%), Positives = 152/318 (47%), Gaps = 30/318 (9%)
 Frame = +2

Query: 2    NSISDAIKRSVLFINSASEIWKQLEKRFSLTNGSRKYKLTKDLFALRQNTLSVNDYFTAM 181
            NS+S  I RS+L +N AS+IW+ L  RF++TN  R Y LT+++   RQ TLS+++Y+T +
Sbjct: 134  NSVSPQIYRSILRMNDASDIWRDLNSRFNVTNLPRTYNLTQEIQDFRQGTLSLSEYYTRL 193

Query: 182  SALWEEIDSMSTLPVIKTITTEITDFLQVVNTYKEESRLFQFLNGLNEVYGPQRSQLLMQ 361
              LW+++DS   L    T    +      +    E++++ +FL GLNE Y   R Q++ +
Sbjct: 194  KTLWDQLDSTEALDEPCTCGKAMR-----LQQKAEQAKIVKFLAGLNESYAIVRRQIIAK 248

Query: 362  VPLPTVDVACSALQQEESQRDILHNVLSLDTDISAMYGKGPQYQTDKPVMCTNCGGKN-- 535
              LP++      L Q+ SQ+    NV++     +    +  Q  +  P +C    G N  
Sbjct: 249  KALPSLGEVYHILDQDNSQQS-FSNVVA--PPAAFQVSEITQSPSMDPTVCYVQNGPNKG 305

Query: 536  -----------HPSEKCWSVVGFPRWHHRYRPPAQRKHPQQNSWAGNKSQAPK--MANAA 676
                       H +E+C+   GFP     + P  +         AG K Q PK   AN A
Sbjct: 306  RPICSFYNRVGHIAERCYKKHGFP---PGFTPKGK---------AGEKLQKPKPLAANVA 353

Query: 677  QGSRISSEQPGVM--VTSQQLEKLLKLI-------PTSSFPPAQTSETDD------ELDY 811
            + S +++    ++  ++ +QL++ + +        P S++  A TS++D+         Y
Sbjct: 354  ESSEVNTSLESMVGNLSKEQLQQFIAMFSSQLQNTPPSTYATASTSQSDNLGICFSPSTY 413

Query: 812  NFSGMVLTGSSAKNTEAW 865
            +F G++       ++  W
Sbjct: 414  SFIGILTVARHTLSSATW 431


>gb|AAD25830.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1015

 Score =  112 bits (281), Expect = 8e-23
 Identities = 63/200 (31%), Positives = 110/200 (55%), Gaps = 10/200 (5%)
 Frame = +2

Query: 5   SISDAIKRSVLFINSASEIWKQLEKRFSLTNGSRKYKLTKDLFALRQNTLSVNDYFTAMS 184
           SI   I +S+L  + ASEIWK L  RF +TN  R Y+L++ +++L+Q ++ +  Y+T + 
Sbjct: 82  SIISEIYKSILRFSDASEIWKDLATRFHITNLPRSYQLSQQIWSLQQGSMDLATYYTTLK 141

Query: 185 ALWEEIDSMSTLPVIKTITTEITDFLQVVNTYKEESRLFQFLNGLNEVYGPQRSQLLMQV 364
            LW E+D  + + V K       D  + + T  E +R+ +FL GLNE Y   RSQ++M+ 
Sbjct: 142 TLWNELDGANCVTVCKN-----CDCCKAMETKSEHARVIKFLAGLNESYAVIRSQIIMKK 196

Query: 365 PLPTVDVACSALQQEESQRDI--LHNVLSLD--------TDISAMYGKGPQYQTDKPVMC 514
            +P +    + L Q+ SQR+I  + N ++ +          ++A Y      +  + V+C
Sbjct: 197 HIPELAGIYNLLDQDLSQRNITPVQNAVAFNFSAMEPTQASVNATYNHS---KLQQKVIC 253

Query: 515 TNCGGKNHPSEKCWSVVGFP 574
           ++CG   H  +KC+ + G+P
Sbjct: 254 SHCGYTGHTVDKCYKIHGYP 273


>dbj|BAF00783.1| hypothetical protein [Arabidopsis thaliana]
          Length = 556

 Score =  110 bits (274), Expect = 5e-22
 Identities = 61/202 (30%), Positives = 108/202 (53%), Gaps = 11/202 (5%)
 Frame = +2

Query: 2   NSISDAIKRSVLFINSASEIWKQLEKRFSLTNGSRKYKLTKDLFALRQNTLSVNDYFTAM 181
           NS+S  I +S+L  + ASEIW  L  R+ +TN  R Y LT+ +++L+Q T+ +  Y+T +
Sbjct: 89  NSVSKPIYKSILRFDDASEIWNDLSTRYHITNLPRSYPLTQQIWSLQQGTMDLTTYYTTL 148

Query: 182 SALWEEIDSMSTLPVIKTITTEITDFLQVVNTYKEESRLFQFLNGLNEVYGPQRSQLLMQ 361
             LW E+D    + + K       D  + ++   E +R+ +FL GLNE Y   RSQ++M+
Sbjct: 149 RTLWNELDGSDCVTLCKR-----CDCCKAMDKKAEHARVIKFLAGLNESYAVIRSQIIMK 203

Query: 362 VPLPTVDVACSALQQEESQRDILHNVLSLDTDISAMYGKGPQ---------YQTDKP--V 508
             +P++    + L Q+ SQR    +   + ++ +A     P+         +   KP  V
Sbjct: 204 KHVPSLAEIYNLLDQDHSQR----SFTPVPSNAAAFIVSAPEQVQPSVNATFNNAKPQKV 259

Query: 509 MCTNCGGKNHPSEKCWSVVGFP 574
           +C++CG   H  ++C+ + G+P
Sbjct: 260 ICSHCGYTGHTVDRCYKIHGYP 281