BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00026957
         (1247 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272755.1| PREDICTED: pentatricopeptide repeat-containi...   338   2e-90
ref|XP_003526715.1| PREDICTED: pentatricopeptide repeat-containi...   294   4e-77
ref|XP_003523367.1| PREDICTED: pentatricopeptide repeat-containi...   293   5e-77
ref|XP_003602247.1| Pentatricopeptide repeat-containing protein ...   287   3e-75
ref|XP_002516677.1| pentatricopeptide repeat-containing protein,...   285   1e-74

>ref|XP_002272755.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49240-like
            [Vitis vinifera]
          Length = 672

 Score =  338 bits (866), Expect = 2e-90
 Identities = 176/310 (56%), Positives = 219/310 (70%)
 Frame = -2

Query: 1246 SPPKTLSVNLGSYNVIVDGYCAEGKFSEAIEVFKSMGEKRCAPDTLSYNNLIEQLCKNGM 1067
            +PP+ LS+NLGS+NV+VDG+C  G+F +AIEVF+ MGEKRC+ DTLSYNNLIEQLC NGM
Sbjct: 340  NPPRRLSMNLGSFNVMVDGFCTAGRFKDAIEVFRKMGEKRCSADTLSYNNLIEQLCNNGM 399

Query: 1066 LAEGEELYRGMAEKGVSPDEFTFVLLMDTCFEEDRPDDAAGYFKTMVEAKLRPNLGVYCR 887
            LAE EELY  MA KGV+PDEFT+VLLMDTCF+E+R DD AGYF+ MVE  LRPNL VY +
Sbjct: 400  LAEAEELYGEMANKGVNPDEFTYVLLMDTCFKENRTDDGAGYFRKMVETGLRPNLAVYSK 459

Query: 886  CVEGLVKVGKVDEAKSFFDLMVGKLRMDDASYKFIMKSLFDIGKPDEVLAIVGSMLRDDP 707
             V+GLVKVGK+DEAKSF+DLMV KL+MD+ASYKF+MK+LF++GK D+VL ++G ML DD 
Sbjct: 460  LVDGLVKVGKIDEAKSFYDLMVKKLKMDEASYKFLMKALFEVGKHDDVLKMIGDMLDDDA 519

Query: 706  SDFTTELQEFAKEELGKLGREDEVVKLMEDXXXXXXXXXXXXXXXXXXXXXXXXXAVSSL 527
            S+FTT+LQEF KEEL K GRE++VVKLMED                         AVSSL
Sbjct: 520  SEFTTDLQEFVKEELRKEGREEDVVKLMEDKEREKAEAQAKEAAATEAAKASAKAAVSSL 579

Query: 526  IPSKLFGNKGLDKDSSVXXXXXXXXXXNGEVQAGKEENVLDQVGDIGSANADSTEALKAS 347
            +PSKLFG+K  + +  V            E     E+   + +GD   A + S EA KA 
Sbjct: 580  LPSKLFGSKDTENEPDVVIGNTVEAISVNEEVEDVEQ---ESIGD-SPAESGSEEATKAH 635

Query: 346  DVIEAEVISD 317
            +  + +V SD
Sbjct: 636  NSADLDVKSD 645


>ref|XP_003526715.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49240-like
            [Glycine max]
          Length = 632

 Score =  294 bits (752), Expect = 4e-77
 Identities = 164/306 (53%), Positives = 201/306 (65%), Gaps = 1/306 (0%)
 Frame = -2

Query: 1243 PPKTLSVNLGSYNVIVDGYCAEGKFSEAIEVFKSMGEKR-CAPDTLSYNNLIEQLCKNGM 1067
            PPK LSVNLGS+NVIVDGYC EG+F EA+EVF+ +GE R C+PDTLS+NNLIE+LC NG 
Sbjct: 337  PPKRLSVNLGSFNVIVDGYCGEGRFEEAMEVFRKIGEYRGCSPDTLSFNNLIERLCDNGR 396

Query: 1066 LAEGEELYRGMAEKGVSPDEFTFVLLMDTCFEEDRPDDAAGYFKTMVEAKLRPNLGVYCR 887
            + E EE+Y  M  KGVSPDEFT+ LLMD CF E+R DD+A YF+ MV++ LRPNL VY R
Sbjct: 397  IVEAEEVYGEMEGKGVSPDEFTYGLLMDACFRENRADDSAAYFRKMVDSGLRPNLAVYNR 456

Query: 886  CVEGLVKVGKVDEAKSFFDLMVGKLRMDDASYKFIMKSLFDIGKPDEVLAIVGSMLRDDP 707
             V+GLVKVGK+DEAK FF+LMV KL+MD ASY+F+MK L D G+ DE+L IV ++L D+ 
Sbjct: 457  LVDGLVKVGKIDEAKGFFELMVKKLKMDVASYQFMMKVLSDEGRLDEMLQIVDTLLDDNG 516

Query: 706  SDFTTELQEFAKEELGKLGREDEVVKLMEDXXXXXXXXXXXXXXXXXXXXXXXXXAVSSL 527
             DF  E QEF K EL K GRE+E+ KL+E+                         AV+SL
Sbjct: 517  VDFDEEFQEFVKGELRKEGREEELTKLIEEKERLKAEAKAKDIEAAEAAKRSARAAVASL 576

Query: 526  IPSKLFGNKGLDKDSSVXXXXXXXXXXNGEVQAGKEENVLDQVGDIGSANADSTEALKAS 347
            +PSKLFGNK  D +S             GE+QA  EE          SANA ++EA  A 
Sbjct: 577  LPSKLFGNKETDSESKT----------EGEIQALGEE----------SANATASEAELAE 616

Query: 346  DVIEAE 329
               E E
Sbjct: 617  KTTETE 622


>ref|XP_003523367.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49240-like
            [Glycine max]
          Length = 631

 Score =  293 bits (751), Expect = 5e-77
 Identities = 163/305 (53%), Positives = 197/305 (64%)
 Frame = -2

Query: 1243 PPKTLSVNLGSYNVIVDGYCAEGKFSEAIEVFKSMGEKRCAPDTLSYNNLIEQLCKNGML 1064
            P K LSVNLGS+NVIVDGYC EG+F EA+EVF+ MGE RC+PDTLS+NNLI++LC NG +
Sbjct: 337  PLKRLSVNLGSFNVIVDGYCDEGRFEEAMEVFRKMGEYRCSPDTLSFNNLIDRLCDNGRI 396

Query: 1063 AEGEELYRGMAEKGVSPDEFTFVLLMDTCFEEDRPDDAAGYFKTMVEAKLRPNLGVYCRC 884
             E EE+Y  M  KGVSPDEFT+ LLMD CF E+R DDAA YF+ MV++ LRPNL VY R 
Sbjct: 397  VEAEEVYGEMEGKGVSPDEFTYGLLMDACFRENRADDAAAYFRKMVDSGLRPNLAVYNRL 456

Query: 883  VEGLVKVGKVDEAKSFFDLMVGKLRMDDASYKFIMKSLFDIGKPDEVLAIVGSMLRDDPS 704
            V GLVKVGK+DEAK FF+LMV KL+MD  SY+FIMK L D G+ DE+L IV ++L D+  
Sbjct: 457  VGGLVKVGKIDEAKGFFELMVKKLKMDVTSYQFIMKVLSDEGRLDEMLKIVDTLLDDNGV 516

Query: 703  DFTTELQEFAKEELGKLGREDEVVKLMEDXXXXXXXXXXXXXXXXXXXXXXXXXAVSSLI 524
            DF  E QEF K EL K GRE+E+ KLME+                         AV+SL+
Sbjct: 517  DFDEEFQEFVKGELRKEGREEELTKLMEEKERLKAEAKAKEIEAAEAAKRSARAAVASLL 576

Query: 523  PSKLFGNKGLDKDSSVXXXXXXXXXXNGEVQAGKEENVLDQVGDIGSANADSTEALKASD 344
            PSKLFGNK  D +S             GE+QA  EEN           NA ++EA    +
Sbjct: 577  PSKLFGNKETDLESK----------REGEIQALNEEN----------TNATASEAELVEE 616

Query: 343  VIEAE 329
              E E
Sbjct: 617  TTETE 621


>ref|XP_003602247.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355491295|gb|AES72498.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 704

 Score =  287 bits (735), Expect = 3e-75
 Identities = 141/210 (67%), Positives = 170/210 (80%)
 Frame = -2

Query: 1246 SPPKTLSVNLGSYNVIVDGYCAEGKFSEAIEVFKSMGEKRCAPDTLSYNNLIEQLCKNGM 1067
            +PP  L+VNLGS+NV+VDGYCAEGKF EAIEVF+SMGE RC PDTLS+NNLIEQLC NGM
Sbjct: 344  NPPAKLAVNLGSFNVMVDGYCAEGKFKEAIEVFRSMGESRCKPDTLSFNNLIEQLCNNGM 403

Query: 1066 LAEGEELYRGMAEKGVSPDEFTFVLLMDTCFEEDRPDDAAGYFKTMVEAKLRPNLGVYCR 887
            + E EE+Y  M  KGV+PDE+T+ LLMDTCF+E+RPDDAA YFK MVE+ LRPNL VY R
Sbjct: 404  ILEAEEVYGEMEGKGVNPDEYTYGLLMDTCFKENRPDDAASYFKKMVESGLRPNLAVYNR 463

Query: 886  CVEGLVKVGKVDEAKSFFDLMVGKLRMDDASYKFIMKSLFDIGKPDEVLAIVGSMLRDDP 707
             V+GLVKVGK+D+AK FFDLMV KL+MD ASY+F+MK L + G+ D+VL IV  +L D+ 
Sbjct: 464  LVDGLVKVGKIDDAKFFFDLMVKKLKMDVASYQFMMKVLSEAGRLDDVLQIVNMLLDDNG 523

Query: 706  SDFTTELQEFAKEELGKLGREDEVVKLMED 617
             DF  E QEF K EL K GRE+++ KLME+
Sbjct: 524  VDFDEEFQEFVKVELRKEGREEDLAKLMEE 553


>ref|XP_002516677.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223544172|gb|EEF45696.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 660

 Score =  285 bits (730), Expect = 1e-74
 Identities = 157/316 (49%), Positives = 206/316 (65%), Gaps = 2/316 (0%)
 Frame = -2

Query: 1246 SPPKTLSVNLGSYNVIVDGYCAEGKFSEAIEVFKSMGEKRCAPDTLSYNNLIEQLCKNGM 1067
            +PP+ L+VNLGS+NVIVDGYCA+G+F +AI+VF+ MG+ RC+PD LSYNNLI+QLCKNGM
Sbjct: 353  NPPRYLAVNLGSFNVIVDGYCAQGRFEDAIDVFRKMGDYRCSPDVLSYNNLIDQLCKNGM 412

Query: 1066 LAEGEELYRGMAEKGVSPDEFTFVLLMDTCFEEDRPDDAAGYFKTMVEAKLRPNLGVYCR 887
            L E E+LY  M  KGV PDE+T+ LLMDTC E+DR DD AGYF+ MV+  LRPNL VY R
Sbjct: 413  LVEAEDLYGEMDGKGVKPDEYTYGLLMDTCLEKDRVDDGAGYFRKMVDTGLRPNLAVYNR 472

Query: 886  CVEGLVKVGKVDEAKSFFDLMVGKLRMDDASYKFIMKSLFDIGKPDEVLAIVGSMLRDDP 707
             V+ LVK+ K+DEAKSF+ LMV KL+MD+ASYKF+M++L D  + DE++ +V  ML D+ 
Sbjct: 473  LVDKLVKLKKIDEAKSFYYLMVKKLKMDNASYKFMMEALADNDQMDELIKMVDGMLDDEA 532

Query: 706  SDFTTELQEFAKEELGKLGREDEVVKLMEDXXXXXXXXXXXXXXXXXXXXXXXXXAVSSL 527
             +   ELQEFAKE LG++GR +E+++LME                          AV+SL
Sbjct: 533  IELDLELQEFAKELLGRVGRGEELMELMEKKEKEKAEAKAKEAEAAEAAKRSAKAAVASL 592

Query: 526  IPSKLFGNKGLDKDSSVXXXXXXXXXXNGEVQAGKEENVLDQVGDIGSANADSTEALKAS 347
            +PSKLFGNK  + +S              E  +  E   +++   +GS  AD        
Sbjct: 593  LPSKLFGNKEAETESK------EANGNGSEAASVNEGAPVEEATIVGSVPADMN---TKE 643

Query: 346  DVI--EAEVISDSAIG 305
            DVI  E E  SD+A G
Sbjct: 644  DVIQGETEAKSDAATG 659