BLASTX nr result

ID: Cnidium21_contig00026839 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00026839
         (535 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAA32827.1| 98b [Daucus carota]                                   138   5e-31
ref|XP_003530363.1| PREDICTED: high mobility group B protein 13-...    70   2e-10
ref|XP_003530362.1| PREDICTED: high mobility group B protein 13-...    70   2e-10
ref|XP_003525347.1| PREDICTED: high mobility group B protein 13-...    69   3e-10
gb|ACU19173.1| unknown [Glycine max]                                   67   2e-09

>dbj|BAA32827.1| 98b [Daucus carota]
          Length = 502

 Score =  138 bits (348), Expect = 5e-31
 Identities = 84/152 (55%), Positives = 89/152 (58%)
 Frame = -1

Query: 535 ESNFPDLVPTKKGRSRKALKPKTPSSNDTNILPVPVSQSSPVKKASDTIIXXXXXXXXXX 356
           E NF DLVPTKKGRSRKALKPKTPSSN+TNILPVPVSQ+SPVKKA               
Sbjct: 9   EPNFSDLVPTKKGRSRKALKPKTPSSNETNILPVPVSQASPVKKA-----MTESTGKENE 63

Query: 355 XXXXXXXXXXXXKPQEGNYEKEFEEMQKKLEQMXXXXXXXXXXXXXXXXXXXXXXXXXXX 176
                       KPQEG++EK FEEMQKKLEQM                           
Sbjct: 64  KKKTKKKAAKEAKPQEGDFEKMFEEMQKKLEQMTLEKAKTEEMLKEREEALRRKEEELET 123

Query: 175 XXXXXXKLQMEIKKLGKMKEFKPTVNFPLVQA 80
                 KLQ+EIKKLGKMKEFKPTVNFPLVQA
Sbjct: 124 RGREQEKLQIEIKKLGKMKEFKPTVNFPLVQA 155


>ref|XP_003530363.1| PREDICTED: high mobility group B protein 13-like isoform 2 [Glycine
           max]
          Length = 467

 Score = 70.5 bits (171), Expect = 2e-10
 Identities = 51/152 (33%), Positives = 69/152 (45%), Gaps = 8/152 (5%)
 Frame = -1

Query: 514 VPTKKGRSRKALKPKTPSSNDTN-ILPVPVSQSS-------PVKKASDTIIXXXXXXXXX 359
           VPTK+GR R+ALK KTPS+ND N I+  P+S SS       P KK  D+           
Sbjct: 9   VPTKRGRGRRALKEKTPSTNDANIIIATPISPSSEKAAQVVPSKKKQDS----------- 57

Query: 358 XXXXXXXXXXXXXKPQEGNYEKEFEEMQKKLEQMXXXXXXXXXXXXXXXXXXXXXXXXXX 179
                          ++ ++EKE  EMQ+ L+QM                          
Sbjct: 58  --------------KKQQSFEKELLEMQEMLQQMRLEKEKTEELLKVKDEALKLKEEELE 103

Query: 178 XXXXXXXKLQMEIKKLGKMKEFKPTVNFPLVQ 83
                  KLQ E+KKL K+KEFKPT+N P+++
Sbjct: 104 NRGREQEKLQTELKKLQKLKEFKPTMNLPVLK 135


>ref|XP_003530362.1| PREDICTED: high mobility group B protein 13-like isoform 1 [Glycine
           max]
          Length = 478

 Score = 70.5 bits (171), Expect = 2e-10
 Identities = 51/152 (33%), Positives = 69/152 (45%), Gaps = 8/152 (5%)
 Frame = -1

Query: 514 VPTKKGRSRKALKPKTPSSNDTN-ILPVPVSQSS-------PVKKASDTIIXXXXXXXXX 359
           VPTK+GR R+ALK KTPS+ND N I+  P+S SS       P KK  D+           
Sbjct: 9   VPTKRGRGRRALKEKTPSTNDANIIIATPISPSSEKAAQVVPSKKKQDS----------- 57

Query: 358 XXXXXXXXXXXXXKPQEGNYEKEFEEMQKKLEQMXXXXXXXXXXXXXXXXXXXXXXXXXX 179
                          ++ ++EKE  EMQ+ L+QM                          
Sbjct: 58  --------------KKQQSFEKELLEMQEMLQQMRLEKEKTEELLKVKDEALKLKEEELE 103

Query: 178 XXXXXXXKLQMEIKKLGKMKEFKPTVNFPLVQ 83
                  KLQ E+KKL K+KEFKPT+N P+++
Sbjct: 104 NRGREQEKLQTELKKLQKLKEFKPTMNLPVLK 135


>ref|XP_003525347.1| PREDICTED: high mobility group B protein 13-like [Glycine max]
          Length = 473

 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 50/150 (33%), Positives = 68/150 (45%), Gaps = 6/150 (4%)
 Frame = -1

Query: 514 VPTKKGRSRKALKPKTPSSNDTN-ILPVPVSQSS-----PVKKASDTIIXXXXXXXXXXX 353
           VP K+GR R+ALK KTPS+ND N I+  P+S SS     P KK  D+             
Sbjct: 9   VPAKRGRGRRALKEKTPSTNDANIIIATPISPSSDKAQVPSKKKQDS------------- 55

Query: 352 XXXXXXXXXXXKPQEGNYEKEFEEMQKKLEQMXXXXXXXXXXXXXXXXXXXXXXXXXXXX 173
                        ++ ++EKE  EMQ+ L+QM                            
Sbjct: 56  ------------KKQQSFEKELLEMQEMLQQMRLEKEKTEELLKLKDEALKQKDEELKNR 103

Query: 172 XXXXXKLQMEIKKLGKMKEFKPTVNFPLVQ 83
                KLQ E+KKL K+KEFKPT+N P+++
Sbjct: 104 GREQEKLQTELKKLQKLKEFKPTMNLPVLK 133


>gb|ACU19173.1| unknown [Glycine max]
          Length = 478

 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 50/147 (34%), Positives = 65/147 (44%), Gaps = 8/147 (5%)
 Frame = -1

Query: 514 VPTKKGRSRKALKPKTPSSNDTN-ILPVPVSQSS-------PVKKASDTIIXXXXXXXXX 359
           VPTK+GR R+ALK KTPS+ND N I+  P+S SS       P KK  D+           
Sbjct: 9   VPTKRGRGRRALKEKTPSTNDANIIIATPISPSSEKAAQVVPSKKKQDS----------- 57

Query: 358 XXXXXXXXXXXXXKPQEGNYEKEFEEMQKKLEQMXXXXXXXXXXXXXXXXXXXXXXXXXX 179
                          ++ ++EKE  EMQ+ L+QM                          
Sbjct: 58  --------------KKQQSFEKELLEMQEMLQQMRLEKEKTEELLKVKDEALKLKEEELE 103

Query: 178 XXXXXXXKLQMEIKKLGKMKEFKPTVN 98
                  KLQ E+KKL K+KEFKPT+N
Sbjct: 104 NRGREQEKLQTELKKLQKLKEFKPTMN 130


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