BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00026787
         (418 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, ch...   112   5e-28
ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mi...   105   1e-26
emb|CBI27412.3| unnamed protein product [Vitis vinifera]              105   2e-26
sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymeras...   104   3e-25
dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymer...   104   3e-25

>ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2,
           chloroplastic/mitochondrial [Vitis vinifera]
           gi|298204431|emb|CBI16911.3| unnamed protein product
           [Vitis vinifera]
          Length = 1035

 Score =  112 bits (279), Expect(2) = 5e-28
 Identities = 55/85 (64%), Positives = 64/85 (75%)
 Frame = -1

Query: 418 YMKSLFLGWFEPLTNKINEDQEKCRAGKNKASYAPYFDQLPADMMAVITXXXXXXXXXXX 239
           YMKSLFLGWFEPL + I ++QE CR GKNKA+YAPYFDQLPADMM+VIT           
Sbjct: 234 YMKSLFLGWFEPLRDAIVKEQELCRLGKNKAAYAPYFDQLPADMMSVITMHKLVGLLMTG 293

Query: 238 XXXGTARVVQAACAVGEAIEQEIRI 164
              G+ RVVQAAC +G+AIEQE+RI
Sbjct: 294 GEHGSTRVVQAACVIGDAIEQEVRI 318



 Score = 37.4 bits (85), Expect(2) = 5e-28
 Identities = 18/31 (58%), Positives = 21/31 (67%)
 Frame = -2

Query: 93  DIALKEDGKLRKTVTNLIKKQKLQTVRAIIK 1
           D  + E  KLRK VTNL+KKQKL   R I+K
Sbjct: 342 DPVIHEQEKLRKKVTNLMKKQKLHAARQIVK 372


>ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Vitis
           vinifera]
          Length = 978

 Score =  105 bits (263), Expect(2) = 1e-26
 Identities = 52/86 (60%), Positives = 63/86 (73%)
 Frame = -1

Query: 418 YMKSLFLGWFEPLTNKINEDQEKCRAGKNKASYAPYFDQLPADMMAVITXXXXXXXXXXX 239
           Y+KSLFLGWFEPL + I  +Q+ C+ GKN+A+YAPYFD LPADMMAVIT           
Sbjct: 180 YIKSLFLGWFEPLRDVIAAEQDLCKQGKNRAAYAPYFDHLPADMMAVITMHKLMGLLMTG 239

Query: 238 XXXGTARVVQAACAVGEAIEQEIRIR 161
              G+ARVVQAAC +GEAIE E+RI+
Sbjct: 240 EGNGSARVVQAACHIGEAIEHEVRIQ 265



 Score = 38.5 bits (88), Expect(2) = 1e-26
 Identities = 20/37 (54%), Positives = 25/37 (67%)
 Frame = -2

Query: 111 NEEEASDIALKEDGKLRKTVTNLIKKQKLQTVRAIIK 1
           N +  S+   KE  KLRK V+ L+KKQKLQ VR I+K
Sbjct: 280 NPDGGSNPVTKEQEKLRKKVSMLMKKQKLQQVRQIVK 316


>emb|CBI27412.3| unnamed protein product [Vitis vinifera]
          Length = 810

 Score =  105 bits (263), Expect(2) = 2e-26
 Identities = 52/86 (60%), Positives = 63/86 (73%)
 Frame = -1

Query: 418 YMKSLFLGWFEPLTNKINEDQEKCRAGKNKASYAPYFDQLPADMMAVITXXXXXXXXXXX 239
           Y+KSLFLGWFEPL + I  +Q+ C+ GKN+A+YAPYFD LPADMMAVIT           
Sbjct: 12  YIKSLFLGWFEPLRDVIAAEQDLCKQGKNRAAYAPYFDHLPADMMAVITMHKLMGLLMTG 71

Query: 238 XXXGTARVVQAACAVGEAIEQEIRIR 161
              G+ARVVQAAC +GEAIE E+RI+
Sbjct: 72  EGNGSARVVQAACHIGEAIEHEVRIQ 97



 Score = 38.5 bits (88), Expect(2) = 2e-26
 Identities = 20/37 (54%), Positives = 25/37 (67%)
 Frame = -2

Query: 111 NEEEASDIALKEDGKLRKTVTNLIKKQKLQTVRAIIK 1
           N +  S+   KE  KLRK V+ L+KKQKLQ VR I+K
Sbjct: 112 NPDGGSNPVTKEQEKLRKKVSMLMKKQKLQQVRQIVK 148


>sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymerase 2,
           chloroplastic/mitochondrial; AltName: Full=NsRpoT-B;
           AltName: Full=T7 bacteriophage-type single subunit RNA
           polymerase 2; Flags: Precursor
           gi|21425639|emb|CAC82575.2| phage-type RNA polymerase
           [Nicotiana sylvestris]
          Length = 1020

 Score =  104 bits (259), Expect(2) = 3e-25
 Identities = 54/85 (63%), Positives = 62/85 (72%)
 Frame = -1

Query: 418 YMKSLFLGWFEPLTNKINEDQEKCRAGKNKASYAPYFDQLPADMMAVITXXXXXXXXXXX 239
           Y+KSLFLGWFEPL +KI E+QE C  GK+KA+YA YF QLPADMMAVIT           
Sbjct: 222 YVKSLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYFYQLPADMMAVITMHKLMGLLMTG 281

Query: 238 XXXGTARVVQAACAVGEAIEQEIRI 164
              GTARVVQAA  +G+AIEQE+RI
Sbjct: 282 GDHGTARVVQAALVIGDAIEQEVRI 306



 Score = 35.8 bits (81), Expect(2) = 3e-25
 Identities = 17/36 (47%), Positives = 25/36 (69%)
 Frame = -2

Query: 108 EEEASDIALKEDGKLRKTVTNLIKKQKLQTVRAIIK 1
           ++E  +   +E  KLRK VTNL+KKQKL+ V  I++
Sbjct: 323 QKEDGEHVTQEQEKLRKKVTNLMKKQKLRAVGQIVR 358


>dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
           sylvestris] gi|17221595|dbj|BAB78465.1| T7
           bacteriophage-type single subunit RNA polymerase
           [Nicotiana sylvestris]
          Length = 1020

 Score =  104 bits (259), Expect(2) = 3e-25
 Identities = 54/85 (63%), Positives = 62/85 (72%)
 Frame = -1

Query: 418 YMKSLFLGWFEPLTNKINEDQEKCRAGKNKASYAPYFDQLPADMMAVITXXXXXXXXXXX 239
           Y+KSLFLGWFEPL +KI E+QE C  GK+KA+YA YF QLPADMMAVIT           
Sbjct: 222 YVKSLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYFYQLPADMMAVITMHKLMGLLMTG 281

Query: 238 XXXGTARVVQAACAVGEAIEQEIRI 164
              GTARVVQAA  +G+AIEQE+RI
Sbjct: 282 GDHGTARVVQAALVIGDAIEQEVRI 306



 Score = 35.8 bits (81), Expect(2) = 3e-25
 Identities = 17/36 (47%), Positives = 25/36 (69%)
 Frame = -2

Query: 108 EEEASDIALKEDGKLRKTVTNLIKKQKLQTVRAIIK 1
           ++E  +   +E  KLRK VTNL+KKQKL+ V  I++
Sbjct: 323 QKEDGEHVTQEQEKLRKKVTNLMKKQKLRAVGQIVR 358