BLASTX nr result

ID: Cnidium21_contig00026677 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00026677
         (532 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFK43869.1| unknown [Medicago truncatula]                           57   2e-06
dbj|BAB02488.1| RCD1 [Arabidopsis thaliana]                            56   4e-06
ref|XP_003664216.1| hypothetical protein MYCTH_2306791 [Myceliop...    56   4e-06
ref|XP_002885405.1| hypothetical protein ARALYDRAFT_479606 [Arab...    56   4e-06
ref|NP_188716.1| CCR4-NOT transcription complex subunit 9 [Arabi...    56   4e-06

>gb|AFK43869.1| unknown [Medicago truncatula]
          Length = 306

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 35/79 (44%), Positives = 43/79 (54%)
 Frame = -1

Query: 475 CIFCGRLTSIYSLAAYIPLYLYPFLNTTSKSRPSLHAHNTHHV*LESLTSYSGG*Y*LIL 296
           C+     T +  L AYIPLYLYPFLNTTSKSRP  +   T    + +L           L
Sbjct: 102 CVASHPDTRMLFLNAYIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFL 161

Query: 295 LSTEIIPLCYSFMLLNHQV 239
           LSTEIIPLC   M +  ++
Sbjct: 162 LSTEIIPLCLRTMEMGSEL 180


>dbj|BAB02488.1| RCD1 [Arabidopsis thaliana]
          Length = 307

 Score = 55.8 bits (133), Expect = 4e-06
 Identities = 34/79 (43%), Positives = 43/79 (54%)
 Frame = -1

Query: 475 CIFCGRLTSIYSLAAYIPLYLYPFLNTTSKSRPSLHAHNTHHV*LESLTSYSGG*Y*LIL 296
           C+     T +  L A+IPLYLYPFLNTTSKSRP  +   T    + +L           L
Sbjct: 106 CVASHSDTRMLFLKAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFL 165

Query: 295 LSTEIIPLCYSFMLLNHQV 239
           LSTEIIPLC   M +  ++
Sbjct: 166 LSTEIIPLCLRTMEMGSEL 184


>ref|XP_003664216.1| hypothetical protein MYCTH_2306791 [Myceliophthora thermophila ATCC
           42464] gi|347011486|gb|AEO58971.1| hypothetical protein
           MYCTH_2306791 [Myceliophthora thermophila ATCC 42464]
          Length = 356

 Score = 55.8 bits (133), Expect = 4e-06
 Identities = 33/73 (45%), Positives = 39/73 (53%)
 Frame = -1

Query: 475 CIFCGRLTSIYSLAAYIPLYLYPFLNTTSKSRPSLHAHNTHHV*LESLTSYSGG*Y*LIL 296
           C+     T    L A+IPLYLYPFLNTTSKSRP  +   T    + +L           L
Sbjct: 158 CVASHNETRTLFLTAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDSSEVINFL 217

Query: 295 LSTEIIPLCYSFM 257
           L+TEIIPLC   M
Sbjct: 218 LTTEIIPLCLRIM 230


>ref|XP_002885405.1| hypothetical protein ARALYDRAFT_479606 [Arabidopsis lyrata subsp.
           lyrata] gi|297331245|gb|EFH61664.1| hypothetical protein
           ARALYDRAFT_479606 [Arabidopsis lyrata subsp. lyrata]
          Length = 316

 Score = 55.8 bits (133), Expect = 4e-06
 Identities = 34/79 (43%), Positives = 43/79 (54%)
 Frame = -1

Query: 475 CIFCGRLTSIYSLAAYIPLYLYPFLNTTSKSRPSLHAHNTHHV*LESLTSYSGG*Y*LIL 296
           C+     T +  L A+IPLYLYPFLNTTSKSRP  +   T    + +L           L
Sbjct: 115 CVASHSDTRMLFLKAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFL 174

Query: 295 LSTEIIPLCYSFMLLNHQV 239
           LSTEIIPLC   M +  ++
Sbjct: 175 LSTEIIPLCLRTMEMGSEL 193


>ref|NP_188716.1| CCR4-NOT transcription complex subunit 9 [Arabidopsis thaliana]
           gi|20258840|gb|AAM13902.1| putative cell differentiation
           protein [Arabidopsis thaliana]
           gi|21689729|gb|AAM67486.1| putative cell differentiation
           protein [Arabidopsis thaliana]
           gi|332642903|gb|AEE76424.1| CCR4-NOT transcription
           complex subunit 9 [Arabidopsis thaliana]
          Length = 316

 Score = 55.8 bits (133), Expect = 4e-06
 Identities = 34/79 (43%), Positives = 43/79 (54%)
 Frame = -1

Query: 475 CIFCGRLTSIYSLAAYIPLYLYPFLNTTSKSRPSLHAHNTHHV*LESLTSYSGG*Y*LIL 296
           C+     T +  L A+IPLYLYPFLNTTSKSRP  +   T    + +L           L
Sbjct: 115 CVASHSDTRMLFLKAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFL 174

Query: 295 LSTEIIPLCYSFMLLNHQV 239
           LSTEIIPLC   M +  ++
Sbjct: 175 LSTEIIPLCLRTMEMGSEL 193


Top