BLASTX nr result
ID: Cnidium21_contig00026417
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cnidium21_contig00026417
(879 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymeras... 496 e-138
sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymeras... 493 e-137
emb|CAC95026.1| plastid RNA polymerase [Nicotiana tabacum] 490 e-136
ref|XP_002308414.1| predicted protein [Populus trichocarpa] gi|2... 483 e-134
emb|CAJ13818.1| DNA-dependent RNA polymerase 1 [Chrysanthemum x ... 483 e-134
>sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymerase 3, chloroplastic; AltName:
Full=NsRpoT-C; AltName: Full=T7 bacteriophage-type single
subunit RNA polymerase 3; Flags: Precursor
gi|59800203|sp|P69243.1|RPO3A_TOBAC RecName:
Full=DNA-directed RNA polymerase 3A, chloroplastic;
AltName: Full=NictaRpoT3-syl; AltName: Full=T7
bacteriophage-type single subunit RNA polymerase 3A;
Flags: Precursor gi|21425641|emb|CAC82576.3| phage-type
RNA polymerase [Nicotiana sylvestris]
gi|21425679|emb|CAC95027.2| plastid RNA polymerase
[Nicotiana tabacum] gi|24475541|dbj|BAC22693.1| T7
bacteriophage-type single subunit RNA polymerase
[Nicotiana sylvestris] gi|24475543|dbj|BAC22694.1| T7
bacteriophage-type single subunit RNA polymerase
[Nicotiana sylvestris]
Length = 977
Score = 496 bits (1277), Expect = e-138
Identities = 230/292 (78%), Positives = 258/292 (88%)
Frame = +3
Query: 3 KGYDKGGHVFLPSYLMRTHGSRHQQDAVKGVPPKQMQKVYEALDTLGNTKWRINTKVLSV 182
+GYDKGG++FLPSYLMRTHGSR QQDAV+ VP KQMQ+VYEALDTLG+TKWR+N ++LSV
Sbjct: 417 RGYDKGGYLFLPSYLMRTHGSRRQQDAVRSVPTKQMQQVYEALDTLGSTKWRVNKRILSV 476
Query: 183 VEKIWSGGGNIAGLVNREDVPIPVLHSDDAGVMKEWRWGVRRAKKVNQERHSLRCDIELK 362
VE IW+GGGNIAGLV+R+DVPIP LHSDD +K+W+W VR++KK+NQE HS RCD ELK
Sbjct: 477 VESIWAGGGNIAGLVDRKDVPIPELHSDDIMEVKKWKWRVRKSKKINQELHSQRCDTELK 536
Query: 363 LSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGQSGFRWL 542
LSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFAEGRPLG+SG RWL
Sbjct: 537 LSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWL 596
Query: 543 KIHLANLYGGGVEKLSYDERLAFVENHIKDIVNSADQPLSGSRWWLMAEDPFQCLAACIN 722
KIHLA+LY GG+EKL YD RLAFVENHI DI++SA+ PL+G+RWWL AEDPFQCLAACIN
Sbjct: 597 KIHLASLYAGGIEKLCYDARLAFVENHIDDILDSANNPLNGNRWWLNAEDPFQCLAACIN 656
Query: 723 LSEALKSSSPHTVISHLPIHQDGSCNGLQHYXXXXXXXXXXXXVNLVGGEKP 878
LSEALKSSSPHTV SHLPIHQDGSCNGLQHY VNLV G+KP
Sbjct: 657 LSEALKSSSPHTVFSHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGDKP 708
>sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymerase 3B, chloroplastic; AltName:
Full=NictaRpoT3-tom; AltName: Full=T7 bacteriophage-type
single subunit RNA polymerase 3B; Flags: Precursor
gi|21425667|emb|CAC95021.2| chloroplast RNA polymerase
[Nicotiana tabacum]
Length = 977
Score = 493 bits (1269), Expect = e-137
Identities = 232/293 (79%), Positives = 260/293 (88%), Gaps = 1/293 (0%)
Frame = +3
Query: 3 KGYDKGGHVFLPSYLMRTHGSRHQQDAVKGVPPKQMQKVYEALDTLGNTKWRINTKVLSV 182
+GYDKGG++FLPSYLMRTHGSR QQDAV+GVP KQMQ+VYEALDTLG+TKWR+N ++L+V
Sbjct: 416 RGYDKGGYLFLPSYLMRTHGSRRQQDAVRGVPTKQMQQVYEALDTLGSTKWRVNKRILNV 475
Query: 183 VEKIWSGGGNIAGLVNREDVPIPVL-HSDDAGVMKEWRWGVRRAKKVNQERHSLRCDIEL 359
VE IW+GGGNIAGLV+R+DVPIP L +SDD +K+W+W VR++KK+NQE HS RCD EL
Sbjct: 476 VESIWAGGGNIAGLVDRKDVPIPELSNSDDIMEVKKWKWKVRKSKKINQELHSQRCDTEL 535
Query: 360 KLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGQSGFRW 539
KLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFAEGRPLG+SG RW
Sbjct: 536 KLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRW 595
Query: 540 LKIHLANLYGGGVEKLSYDERLAFVENHIKDIVNSADQPLSGSRWWLMAEDPFQCLAACI 719
LKIHLA+LY GGVEKL YD RLAFVENHI DI++SA+ PL+G+RWWL AEDPFQCLAACI
Sbjct: 596 LKIHLASLYAGGVEKLCYDARLAFVENHIHDILDSANNPLNGNRWWLNAEDPFQCLAACI 655
Query: 720 NLSEALKSSSPHTVISHLPIHQDGSCNGLQHYXXXXXXXXXXXXVNLVGGEKP 878
NLSEALKSSSPHTVISHLPIHQDGSCNGLQHY VNLV GEKP
Sbjct: 656 NLSEALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGEKP 708
>emb|CAC95026.1| plastid RNA polymerase [Nicotiana tabacum]
Length = 557
Score = 490 bits (1261), Expect = e-136
Identities = 231/291 (79%), Positives = 258/291 (88%), Gaps = 1/291 (0%)
Frame = +3
Query: 9 YDKGGHVFLPSYLMRTHGSRHQQDAVKGVPPKQMQKVYEALDTLGNTKWRINTKVLSVVE 188
YDKGG++FLPSYLMRTHGSR QQDAV+GVP KQMQ+VYEALDTLG+TKWR+N ++L+VVE
Sbjct: 1 YDKGGYLFLPSYLMRTHGSRRQQDAVRGVPTKQMQQVYEALDTLGSTKWRVNKRILNVVE 60
Query: 189 KIWSGGGNIAGLVNREDVPIPVL-HSDDAGVMKEWRWGVRRAKKVNQERHSLRCDIELKL 365
IW+GGGNIAGLV+R+DVPIP L +SDD +K+W+W VR++KK+NQE HS RCD ELKL
Sbjct: 61 SIWAGGGNIAGLVDRKDVPIPELSNSDDIMEVKKWKWKVRKSKKINQELHSQRCDTELKL 120
Query: 366 SVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGQSGFRWLK 545
SVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFAEGRPLG+SG RWLK
Sbjct: 121 SVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLK 180
Query: 546 IHLANLYGGGVEKLSYDERLAFVENHIKDIVNSADQPLSGSRWWLMAEDPFQCLAACINL 725
IHLA+LY GGVEKL YD RLAFVENHI DI++SA+ PL+G+RWWL AEDPFQCLAACINL
Sbjct: 181 IHLASLYAGGVEKLCYDARLAFVENHIHDILDSANNPLNGNRWWLNAEDPFQCLAACINL 240
Query: 726 SEALKSSSPHTVISHLPIHQDGSCNGLQHYXXXXXXXXXXXXVNLVGGEKP 878
SEALKSSSPHTVISHLPIHQDGSCNGLQHY VNLV GEKP
Sbjct: 241 SEALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGEKP 291
>ref|XP_002308414.1| predicted protein [Populus trichocarpa] gi|222854390|gb|EEE91937.1|
predicted protein [Populus trichocarpa]
Length = 982
Score = 483 bits (1243), Expect = e-134
Identities = 228/293 (77%), Positives = 252/293 (86%), Gaps = 1/293 (0%)
Frame = +3
Query: 3 KGYDKGGHVFLPSYLMRTHGSRHQQDAVKGVPPKQMQKVYEALDTLGNTKWRINTKVLSV 182
+GYDKGGH+FLPSY+MRTHGSR QQDAV+ VP KQMQKV+EALDTLGNTKWR+N KVL V
Sbjct: 421 RGYDKGGHLFLPSYIMRTHGSRQQQDAVRSVPGKQMQKVFEALDTLGNTKWRVNGKVLDV 480
Query: 183 VEKIWSGGGNIAGLVNREDVPIPV-LHSDDAGVMKEWRWGVRRAKKVNQERHSLRCDIEL 359
VE+IW+ GGN AGLVNR D+PIP L SDD +++W+W VR+AKK+NQERHS RCD EL
Sbjct: 481 VERIWASGGNNAGLVNRGDIPIPEKLSSDDLTEIQKWKWSVRKAKKINQERHSQRCDTEL 540
Query: 360 KLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGQSGFRW 539
KLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHL HLSSDLCRGVLEFAEGRPLG+SG W
Sbjct: 541 KLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLTHLSSDLCRGVLEFAEGRPLGKSGLCW 600
Query: 540 LKIHLANLYGGGVEKLSYDERLAFVENHIKDIVNSADQPLSGSRWWLMAEDPFQCLAACI 719
LKIHLANLY GGVEKLS+D RLAFVENH+ +I +SA+ P++G RWWL AEDPFQCLAACI
Sbjct: 601 LKIHLANLYSGGVEKLSHDGRLAFVENHLSEIFDSAENPVNGKRWWLTAEDPFQCLAACI 660
Query: 720 NLSEALKSSSPHTVISHLPIHQDGSCNGLQHYXXXXXXXXXXXXVNLVGGEKP 878
NLSEALKS+SPHTVISHLPIHQDGSCNGLQHY VNLV EKP
Sbjct: 661 NLSEALKSASPHTVISHLPIHQDGSCNGLQHYAALGRDSQEAAAVNLVAAEKP 713
>emb|CAJ13818.1| DNA-dependent RNA polymerase 1 [Chrysanthemum x morifolium]
Length = 383
Score = 483 bits (1243), Expect = e-134
Identities = 225/291 (77%), Positives = 253/291 (86%), Gaps = 1/291 (0%)
Frame = +3
Query: 9 YDKGGHVFLPSYLMRTHGSRHQQDAVKGVPPKQMQKVYEALDTLGNTKWRINTKVLSVVE 188
YD GGH FLPSYLMRTHGSR QQDAV+ PP QMQK+YEALDTLG+TKWR+N ++L+VVE
Sbjct: 1 YDCGGHFFLPSYLMRTHGSRQQQDAVEDAPPSQMQKIYEALDTLGSTKWRVNKRLLNVVE 60
Query: 189 KIWSGGGNIAGLVNREDVPIPVLHSDDAGVMKEWRWGVRRAKKVNQERHSLRCDIELKLS 368
IW+ GG+IAGLVNR+DV IP L+S+D+ +KEWRW VR+AKK+NQE HS RCDIELKLS
Sbjct: 61 SIWAAGGDIAGLVNRQDVSIPDLNSEDSSEIKEWRWSVRKAKKMNQELHSQRCDIELKLS 120
Query: 369 V-ARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGQSGFRWLK 545
V AR++KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFAEGRPLG+SG RWL+
Sbjct: 121 VVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLR 180
Query: 546 IHLANLYGGGVEKLSYDERLAFVENHIKDIVNSADQPLSGSRWWLMAEDPFQCLAACINL 725
IHLANLYG GVEKLSYD RLAFVE+HI +I++SAD PL G+RWWL AEDPFQCLAACINL
Sbjct: 181 IHLANLYGSGVEKLSYDGRLAFVESHISEIIDSADNPLGGNRWWLTAEDPFQCLAACINL 240
Query: 726 SEALKSSSPHTVISHLPIHQDGSCNGLQHYXXXXXXXXXXXXVNLVGGEKP 878
+E LKSSSPHTVISHLP+HQDGSCNGLQHY VNLV GEKP
Sbjct: 241 AETLKSSSPHTVISHLPVHQDGSCNGLQHYAALGRDTVEAAAVNLVAGEKP 291