BLASTX nr result

ID: Cnidium21_contig00026330 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00026330
         (2104 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACG35970.1| 50S ribosomal protein L17 [Zea mays]                    96   5e-17
ref|XP_002281739.1| PREDICTED: 50S ribosomal protein L17 [Vitis ...    96   5e-17
emb|CAN65254.1| hypothetical protein VITISV_026602 [Vitis vinifera]    96   5e-17
ref|XP_002307023.1| predicted protein [Populus trichocarpa] gi|2...    94   1e-16
ref|XP_002310514.1| predicted protein [Populus trichocarpa] gi|2...    94   1e-16

>gb|ACG35970.1| 50S ribosomal protein L17 [Zea mays]
          Length = 175

 Score = 95.5 bits (236), Expect = 5e-17
 Identities = 51/84 (60%), Positives = 59/84 (70%)
 Frame = +1

Query: 802  QGTLCAARHAGAFVRGDDVIHKLFTELDYRYKRISLPCCFFSL*FNDCKYTTKILCCRDR 981
            +GT  AAR A AFVRGDDV+HKLFTEL +RY++  +            + TT +    DR
Sbjct: 54   EGTQHAARRAAAFVRGDDVVHKLFTELAFRYRQCGI------------RRTTVVQYLIDR 101

Query: 982  AGGYTRMLRTRIRVGDAAPMAYIE 1053
            AGGYTRMLRTRIRVGDAAPMAYIE
Sbjct: 102  AGGYTRMLRTRIRVGDAAPMAYIE 125


>ref|XP_002281739.1| PREDICTED: 50S ribosomal protein L17 [Vitis vinifera]
            gi|296088573|emb|CBI37564.3| unnamed protein product
            [Vitis vinifera]
          Length = 160

 Score = 95.5 bits (236), Expect = 5e-17
 Identities = 52/84 (61%), Positives = 55/84 (65%)
 Frame = +1

Query: 802  QGTLCAARHAGAFVRGDDVIHKLFTELDYRYKRISLPCCFFSL*FNDCKYTTKILCCRDR 981
            +G+LCAAR A AFVRGDDVIHKLFTEL YRYK                          DR
Sbjct: 54   EGSLCAARRAAAFVRGDDVIHKLFTELAYRYK--------------------------DR 87

Query: 982  AGGYTRMLRTRIRVGDAAPMAYIE 1053
            AGGYTR+LRTRIRVGDAAPMAYIE
Sbjct: 88   AGGYTRLLRTRIRVGDAAPMAYIE 111


>emb|CAN65254.1| hypothetical protein VITISV_026602 [Vitis vinifera]
          Length = 207

 Score = 95.5 bits (236), Expect = 5e-17
 Identities = 52/84 (61%), Positives = 55/84 (65%)
 Frame = +1

Query: 802  QGTLCAARHAGAFVRGDDVIHKLFTELDYRYKRISLPCCFFSL*FNDCKYTTKILCCRDR 981
            +G+LCAAR A AFVRGDDVIHKLFTEL YRYK                          DR
Sbjct: 101  EGSLCAARRAAAFVRGDDVIHKLFTELAYRYK--------------------------DR 134

Query: 982  AGGYTRMLRTRIRVGDAAPMAYIE 1053
            AGGYTR+LRTRIRVGDAAPMAYIE
Sbjct: 135  AGGYTRLLRTRIRVGDAAPMAYIE 158


>ref|XP_002307023.1| predicted protein [Populus trichocarpa] gi|222856472|gb|EEE94019.1|
            predicted protein [Populus trichocarpa]
          Length = 160

 Score = 94.4 bits (233), Expect = 1e-16
 Identities = 51/84 (60%), Positives = 55/84 (65%)
 Frame = +1

Query: 802  QGTLCAARHAGAFVRGDDVIHKLFTELDYRYKRISLPCCFFSL*FNDCKYTTKILCCRDR 981
            +G+LCAAR A AFVRGDDVIHKLF+E+ YRYK                          DR
Sbjct: 54   EGSLCAARRAAAFVRGDDVIHKLFSEMAYRYK--------------------------DR 87

Query: 982  AGGYTRMLRTRIRVGDAAPMAYIE 1053
            AGGYTRMLRTRIRVGDAAPMAYIE
Sbjct: 88   AGGYTRMLRTRIRVGDAAPMAYIE 111


>ref|XP_002310514.1| predicted protein [Populus trichocarpa] gi|222853417|gb|EEE90964.1|
            predicted protein [Populus trichocarpa]
          Length = 160

 Score = 94.0 bits (232), Expect = 1e-16
 Identities = 51/84 (60%), Positives = 55/84 (65%)
 Frame = +1

Query: 802  QGTLCAARHAGAFVRGDDVIHKLFTELDYRYKRISLPCCFFSL*FNDCKYTTKILCCRDR 981
            +G+LCA+R A AFVRGDDVIHKLF+EL YRYK                          DR
Sbjct: 54   EGSLCASRRAAAFVRGDDVIHKLFSELAYRYK--------------------------DR 87

Query: 982  AGGYTRMLRTRIRVGDAAPMAYIE 1053
            AGGYTRMLRTRIRVGDAAPMAYIE
Sbjct: 88   AGGYTRMLRTRIRVGDAAPMAYIE 111


Top