BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00026141
         (516 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABI34293.1| Integrase core domain containing protein [Solanum...    75   7e-12
emb|CAN68148.1| hypothetical protein VITISV_035665 [Vitis vinifera]    69   3e-10
gb|AAC33963.1| contains similarity to reverse transcriptases (Pf...    64   1e-08
emb|CAB40067.1| putative retrotransposon polyprotein [Arabidopsi...    64   1e-08
emb|CAN83808.1| hypothetical protein VITISV_026963 [Vitis vinifera]    64   1e-08

>gb|ABI34293.1| Integrase core domain containing protein [Solanum demissum]
          Length = 716

 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 35/72 (48%), Positives = 47/72 (65%)
 Frame = +3

Query: 66  WIVDSGASDHMTPHLSTMIHSTVANSSQQINLPTGATAVISHTGTVVFPSGLTLNKVLCV 245
           WIVDSGAS+H+T   + ++H     ++ ++ LPTG  A ISHTG      G +L  VLCV
Sbjct: 194 WIVDSGASNHITGSKNLLLHGDTVGNAGKVQLPTGEFAQISHTGNYSLSGGDSLKDVLCV 253

Query: 246 PSFKHNLLSVQR 281
           PSFK NL+SV +
Sbjct: 254 PSFKFNLMSVSK 265


>emb|CAN68148.1| hypothetical protein VITISV_035665 [Vitis vinifera]
          Length = 1813

 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 36/84 (42%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
 Frame = +3

Query: 33  SLSHTNGHSCDWIVDS-GASDHMTPHLSTMIHSTVANSSQQINLPTGATAVISHTGTVVF 209
           +L+H+N  + D   ++ GA+DH+  H+S       +N +  +NLP G  + I+HTGTV+F
Sbjct: 630 ALNHSNSGNIDAYANAAGATDHIVSHMSLFTDLKPSNVTT-VNLPNGVASPITHTGTVIF 688

Query: 210 PSGLTLNKVLCVPSFKHNLLSVQR 281
            S LTL  VLCVPSF  NL+S  +
Sbjct: 689 DSQLTLKDVLCVPSFNLNLISASK 712


>gb|AAC33963.1| contains similarity to reverse transcriptases (Pfam; rvt.hmm,
           score: 11.19) [Arabidopsis thaliana]
          Length = 1633

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 33/70 (47%), Positives = 41/70 (58%)
 Frame = +3

Query: 66  WIVDSGASDHMTPHLSTMIHSTVANSSQQINLPTGATAVISHTGTVVFPSGLTLNKVLCV 245
           WI+DSGAS H+   L TM    +  S   + LP G    I+HTGT+   S L L+ VL V
Sbjct: 397 WIIDSGASSHVCSDL-TMFRELIHVSGVTVTLPNGTRVAITHTGTICITSTLILHNVLLV 455

Query: 246 PSFKHNLLSV 275
           P FK NL+SV
Sbjct: 456 PDFKFNLISV 465


>emb|CAB40067.1| putative retrotransposon polyprotein [Arabidopsis thaliana]
           gi|7267797|emb|CAB81200.1| putative retrotransposon
           polyprotein [Arabidopsis thaliana]
          Length = 1203

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 33/70 (47%), Positives = 41/70 (58%)
 Frame = +3

Query: 66  WIVDSGASDHMTPHLSTMIHSTVANSSQQINLPTGATAVISHTGTVVFPSGLTLNKVLCV 245
           WI+DSGAS H+   L TM    +  S   + LP G    I+HTGT+   S L L+ VL V
Sbjct: 99  WIIDSGASSHVCSDL-TMFRELIHVSGVTVTLPNGTRVAITHTGTICITSTLILHNVLLV 157

Query: 246 PSFKHNLLSV 275
           P FK NL+SV
Sbjct: 158 PDFKFNLISV 167


>emb|CAN83808.1| hypothetical protein VITISV_026963 [Vitis vinifera]
          Length = 971

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 30/72 (41%), Positives = 43/72 (59%)
 Frame = +3

Query: 66  WIVDSGASDHMTPHLSTMIHSTVANSSQQINLPTGATAVISHTGTVVFPSGLTLNKVLCV 245
           WIVDSGASDHMT +L      T  +++  + +  G  + +  TG+V+    +TL+ VLCV
Sbjct: 330 WIVDSGASDHMTGNLMVFHEYTPCHNNSSVRIADGTLSRVFGTGSVIISKDITLHSVLCV 389

Query: 246 PSFKHNLLSVQR 281
           P    NLLS+ R
Sbjct: 390 PKLDCNLLSISR 401