BLASTX nr result
ID: Cnidium21_contig00025351
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cnidium21_contig00025351
(343 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002322252.1| predicted protein [Populus trichocarpa] gi|2... 210 1e-52
ref|XP_002518663.1| U520, putative [Ricinus communis] gi|2235420... 208 4e-52
ref|XP_004165711.1| PREDICTED: LOW QUALITY PROTEIN: U5 small nuc... 207 5e-52
ref|XP_004147618.1| PREDICTED: U5 small nuclear ribonucleoprotei... 207 5e-52
ref|XP_003546783.1| PREDICTED: U5 small nuclear ribonucleoprotei... 206 2e-51
>ref|XP_002322252.1| predicted protein [Populus trichocarpa] gi|222869248|gb|EEF06379.1|
predicted protein [Populus trichocarpa]
Length = 2157
Score = 210 bits (534), Expect = 1e-52
Identities = 99/113 (87%), Positives = 108/113 (95%)
Frame = +3
Query: 3 FKHFNPVQTQVFTVLYNTDDNVLVAAPTGSGKTICAEFAIMRNHQKTPDNVMRAVYIAPI 182
FKHFNPVQTQVFTVLYNTDDNVLVAAPTGSGKTICAEFAI+RNHQK P++VMRAVYIAP+
Sbjct: 1332 FKHFNPVQTQVFTVLYNTDDNVLVAAPTGSGKTICAEFAILRNHQKGPESVMRAVYIAPL 1391
Query: 183 ESLAKERYNDWNRKFGEGLGMRVVELTGETAMDLKLLEKGQLIISTPDKWDAL 341
E++A+ERY DW RKFG GLGMRVVELTGETA DLKLLEKGQ+IISTP+KWDAL
Sbjct: 1392 EAIARERYRDWERKFGRGLGMRVVELTGETATDLKLLEKGQIIISTPEKWDAL 1444
>ref|XP_002518663.1| U520, putative [Ricinus communis] gi|223542044|gb|EEF43588.1| U520,
putative [Ricinus communis]
Length = 1809
Score = 208 bits (529), Expect = 4e-52
Identities = 99/113 (87%), Positives = 106/113 (93%)
Frame = +3
Query: 3 FKHFNPVQTQVFTVLYNTDDNVLVAAPTGSGKTICAEFAIMRNHQKTPDNVMRAVYIAPI 182
FKHFNPVQTQVFTVLYNTDDNVLVAAPTGSGKTICAEFAI+RNHQK PD+V RAVYIAP+
Sbjct: 988 FKHFNPVQTQVFTVLYNTDDNVLVAAPTGSGKTICAEFAILRNHQKGPDSVTRAVYIAPL 1047
Query: 183 ESLAKERYNDWNRKFGEGLGMRVVELTGETAMDLKLLEKGQLIISTPDKWDAL 341
E++AKERY DW RKFG GLGMRVVELTGETA DLKLLEK Q+IISTP+KWDAL
Sbjct: 1048 EAIAKERYRDWERKFGRGLGMRVVELTGETATDLKLLEKSQIIISTPEKWDAL 1100
Score = 66.2 bits (160), Expect = 3e-09
Identities = 39/125 (31%), Positives = 69/125 (55%), Gaps = 13/125 (10%)
Frame = +3
Query: 6 KHFNPVQTQVFTVLYNTDDNVLVAAPTGSGKTICAEFAIMR-------------NHQKTP 146
+ N VQ++V+ DNVL+ APTG+GKT A I++ NH
Sbjct: 142 QQLNRVQSRVYETALFKADNVLLCAPTGAGKTNVAVLTILQQLGLKMNKEDGSFNHSD-- 199
Query: 147 DNVMRAVYIAPIESLAKERYNDWNRKFGEGLGMRVVELTGETAMDLKLLEKGQLIISTPD 326
+ VY+AP+++L E + + + E G++V EL+G+ ++ + +E+ Q+I++TP+
Sbjct: 200 ---YKIVYVAPMKALVAEVVGNLSNRLQE-YGVKVRELSGDQSLTRQQIEETQIIVTTPE 255
Query: 327 KWDAL 341
KWD +
Sbjct: 256 KWDII 260
>ref|XP_004165711.1| PREDICTED: LOW QUALITY PROTEIN: U5 small nuclear ribonucleoprotein
200 kDa helicase-like [Cucumis sativus]
Length = 2175
Score = 207 bits (528), Expect = 5e-52
Identities = 99/113 (87%), Positives = 109/113 (96%)
Frame = +3
Query: 3 FKHFNPVQTQVFTVLYNTDDNVLVAAPTGSGKTICAEFAIMRNHQKTPDNVMRAVYIAPI 182
FKHFNPVQTQVFTVLYNTDDNVLVAAPTGSGKTICAEFAI+RN+QK DNV+RAVYIAPI
Sbjct: 1353 FKHFNPVQTQVFTVLYNTDDNVLVAAPTGSGKTICAEFAILRNYQKGQDNVLRAVYIAPI 1412
Query: 183 ESLAKERYNDWNRKFGEGLGMRVVELTGETAMDLKLLEKGQLIISTPDKWDAL 341
ESLAKERY DW++KFG+GLG+RVVELTGETA DLKLLE+GQ+IISTP+KWDAL
Sbjct: 1413 ESLAKERYRDWDKKFGKGLGIRVVELTGETATDLKLLERGQIIISTPEKWDAL 1465
Score = 67.4 bits (163), Expect = 1e-09
Identities = 38/116 (32%), Positives = 68/116 (58%), Gaps = 7/116 (6%)
Frame = +3
Query: 15 NPVQTQVFTVLYNTDDNVLVAAPTGSGKTICAEFAIMRNH--QKTPD-----NVMRAVYI 173
N VQ++V+ DNVL+ APTG+GKT A I++ PD N + VY+
Sbjct: 511 NRVQSKVYETALFKADNVLLCAPTGAGKTNVAVLTILQQIALHTNPDGSYNHNDYKIVYV 570
Query: 174 APIESLAKERYNDWNRKFGEGLGMRVVELTGETAMDLKLLEKGQLIISTPDKWDAL 341
AP+++L E + + + + G++V EL+G+ + + +++ Q+I++TP+KWD +
Sbjct: 571 APMKALVAEVVGNLSNRL-QDYGVKVRELSGDQTLTRQQIDETQIIVTTPEKWDII 625
>ref|XP_004147618.1| PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase-like
[Cucumis sativus]
Length = 2175
Score = 207 bits (528), Expect = 5e-52
Identities = 99/113 (87%), Positives = 109/113 (96%)
Frame = +3
Query: 3 FKHFNPVQTQVFTVLYNTDDNVLVAAPTGSGKTICAEFAIMRNHQKTPDNVMRAVYIAPI 182
FKHFNPVQTQVFTVLYNTDDNVLVAAPTGSGKTICAEFAI+RN+QK DNV+RAVYIAPI
Sbjct: 1353 FKHFNPVQTQVFTVLYNTDDNVLVAAPTGSGKTICAEFAILRNYQKGQDNVLRAVYIAPI 1412
Query: 183 ESLAKERYNDWNRKFGEGLGMRVVELTGETAMDLKLLEKGQLIISTPDKWDAL 341
ESLAKERY DW++KFG+GLG+RVVELTGETA DLKLLE+GQ+IISTP+KWDAL
Sbjct: 1413 ESLAKERYRDWDKKFGKGLGIRVVELTGETATDLKLLERGQIIISTPEKWDAL 1465
Score = 67.4 bits (163), Expect = 1e-09
Identities = 38/116 (32%), Positives = 68/116 (58%), Gaps = 7/116 (6%)
Frame = +3
Query: 15 NPVQTQVFTVLYNTDDNVLVAAPTGSGKTICAEFAIMRNH--QKTPD-----NVMRAVYI 173
N VQ++V+ DNVL+ APTG+GKT A I++ PD N + VY+
Sbjct: 511 NRVQSKVYETALFKADNVLLCAPTGAGKTNVAVLTILQQIALHTNPDGSYNHNDYKIVYV 570
Query: 174 APIESLAKERYNDWNRKFGEGLGMRVVELTGETAMDLKLLEKGQLIISTPDKWDAL 341
AP+++L E + + + + G++V EL+G+ + + +++ Q+I++TP+KWD +
Sbjct: 571 APMKALVAEVVGNLSNRL-QDYGVKVRELSGDQTLTRQQIDETQIIVTTPEKWDII 625
>ref|XP_003546783.1| PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase-like
[Glycine max]
Length = 2183
Score = 206 bits (523), Expect = 2e-51
Identities = 98/113 (86%), Positives = 106/113 (93%)
Frame = +3
Query: 3 FKHFNPVQTQVFTVLYNTDDNVLVAAPTGSGKTICAEFAIMRNHQKTPDNVMRAVYIAPI 182
FKHFNPVQTQVFTVLYN+DDNVLVAAPTGSGKTICAEFAI+RNHQK PD+VMR VY+API
Sbjct: 1360 FKHFNPVQTQVFTVLYNSDDNVLVAAPTGSGKTICAEFAILRNHQKWPDSVMRVVYVAPI 1419
Query: 183 ESLAKERYNDWNRKFGEGLGMRVVELTGETAMDLKLLEKGQLIISTPDKWDAL 341
ESLAKERY DW +KFG GL +RVVELTGETA DLKLLEKGQ+IISTP+KWDAL
Sbjct: 1420 ESLAKERYRDWEKKFGGGLKLRVVELTGETATDLKLLEKGQIIISTPEKWDAL 1472
Score = 65.9 bits (159), Expect = 3e-09
Identities = 36/117 (30%), Positives = 69/117 (58%), Gaps = 8/117 (6%)
Frame = +3
Query: 15 NPVQTQVFTVLYNTDDNVLVAAPTGSGKTICAEFAIMRN---HQKTPD-----NVMRAVY 170
N VQ++V+ DN+L+ APTG+GKT A I++ H+ D + + VY
Sbjct: 517 NRVQSKVYETALFQPDNLLLCAPTGAGKTNVAVLTILQQIARHRNPKDGSIDHSAYKIVY 576
Query: 171 IAPIESLAKERYNDWNRKFGEGLGMRVVELTGETAMDLKLLEKGQLIISTPDKWDAL 341
+AP+++L E + + + + ++V EL+G+ ++ + +E+ Q+I++TP+KWD +
Sbjct: 577 VAPMKALVAEVVGNLSNRL-QDYDVKVRELSGDQSLTRQQIEETQIIVTTPEKWDII 632