BLASTX nr result
ID: Cnidium21_contig00025265
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cnidium21_contig00025265
(377 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187620.1| 40S ribosomal protein S28-1 [Arabidopsis thalia... 57 6e-10
ref|NP_201219.1| 40S ribosomal protein S28-2 [Arabidopsis thalia... 57 6e-10
emb|CAA10104.1| ribosomal protein S28 [Prunus persica] 55 2e-09
ref|XP_003618578.1| 30S ribosomal protein S28e [Medicago truncat... 53 5e-09
ref|XP_003520726.1| PREDICTED: 40S ribosomal protein S28-like [G... 53 8e-09
>ref|NP_187620.1| 40S ribosomal protein S28-1 [Arabidopsis thaliana]
gi|15237548|ref|NP_196005.1| 40S ribosomal protein S28-1
[Arabidopsis thaliana] gi|297797427|ref|XP_002866598.1|
hypothetical protein ARALYDRAFT_919718 [Arabidopsis
lyrata subsp. lyrata] gi|297810469|ref|XP_002873118.1|
hypothetical protein ARALYDRAFT_325035 [Arabidopsis
lyrata subsp. lyrata] gi|297833792|ref|XP_002884778.1|
hypothetical protein ARALYDRAFT_478337 [Arabidopsis
lyrata subsp. lyrata] gi|297838067|ref|XP_002886915.1|
hypothetical protein ARALYDRAFT_894090 [Arabidopsis
lyrata subsp. lyrata]
gi|75313795|sp|Q9SR73.1|RS281_ARATH RecName: Full=40S
ribosomal protein S28-1
gi|6143868|gb|AAF04415.1|AC010927_8 putative ribosomal
protein S28 [Arabidopsis thaliana]
gi|7406395|emb|CAB85505.1| RIBOSOMAL PROTEIN S28-like
[Arabidopsis thaliana] gi|9758014|dbj|BAB08611.1|
ribosomal protein S28 [Arabidopsis thaliana]
gi|22136042|gb|AAM91603.1| ribosomal protein S28-like
protein [Arabidopsis thaliana]
gi|23197756|gb|AAN15405.1| ribosomal protein S28-like
protein [Arabidopsis thaliana]
gi|38566518|gb|AAR24149.1| At3g10090 [Arabidopsis
thaliana] gi|40823561|gb|AAR92289.1| At3g10090
[Arabidopsis thaliana] gi|106879139|gb|ABF82599.1|
At5g03850 [Arabidopsis thaliana]
gi|297312433|gb|EFH42857.1| hypothetical protein
ARALYDRAFT_919718 [Arabidopsis lyrata subsp. lyrata]
gi|297318955|gb|EFH49377.1| hypothetical protein
ARALYDRAFT_325035 [Arabidopsis lyrata subsp. lyrata]
gi|297330618|gb|EFH61037.1| hypothetical protein
ARALYDRAFT_478337 [Arabidopsis lyrata subsp. lyrata]
gi|297332756|gb|EFH63174.1| hypothetical protein
ARALYDRAFT_894090 [Arabidopsis lyrata subsp. lyrata]
gi|332003279|gb|AED90662.1| 40S ribosomal protein S28-1
[Arabidopsis thaliana] gi|332641337|gb|AEE74858.1| 40S
ribosomal protein S28-1 [Arabidopsis thaliana]
Length = 64
Score = 56.6 bits (135), Expect(2) = 6e-10
Identities = 28/41 (68%), Positives = 33/41 (80%)
Frame = -2
Query: 277 RIQGTQVRAKFMGTEREILRNVKGPVRVGDVLALLETEREA 155
R Q TQVR KF ++R I+RNVKGPVR GD+L LLE+EREA
Sbjct: 20 RGQVTQVRVKFTDSDRYIMRNVKGPVREGDILTLLESEREA 60
Score = 32.0 bits (71), Expect(2) = 6e-10
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = -3
Query: 327 MDN*VPHAVATRVLGRTGSRG 265
MD+ + HAV +V+GRTGSRG
Sbjct: 1 MDSQIKHAVVVKVMGRTGSRG 21
>ref|NP_201219.1| 40S ribosomal protein S28-2 [Arabidopsis thaliana]
gi|464720|sp|P34789.1|RS282_ARATH RecName: Full=40S
ribosomal protein S28-2 gi|409184|gb|AAA32862.1|
ribosomal protein S28 [Arabidopsis thaliana]
gi|10176962|dbj|BAB10282.1| 40S ribosomal protein S28
[Arabidopsis thaliana] gi|16648979|gb|AAL24341.1| 40S
ribosomal protein S28 [Arabidopsis thaliana]
gi|20148701|gb|AAM10241.1| 40S ribosomal protein S28
[Arabidopsis thaliana] gi|21593139|gb|AAM65088.1| 40S
ribosomal protein S28 [Arabidopsis thaliana]
gi|332010463|gb|AED97846.1| 40S ribosomal protein S28-2
[Arabidopsis thaliana]
Length = 64
Score = 56.6 bits (135), Expect(2) = 6e-10
Identities = 29/41 (70%), Positives = 33/41 (80%)
Frame = -2
Query: 277 RIQGTQVRAKFMGTEREILRNVKGPVRVGDVLALLETEREA 155
R Q TQVR KF ++R I+RNVKGPVR GDVL LLE+EREA
Sbjct: 20 RGQVTQVRVKFTDSDRFIMRNVKGPVREGDVLTLLESEREA 60
Score = 32.0 bits (71), Expect(2) = 6e-10
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = -3
Query: 327 MDN*VPHAVATRVLGRTGSRG 265
MD+ + HAV +V+GRTGSRG
Sbjct: 1 MDSQIKHAVVVKVMGRTGSRG 21
>emb|CAA10104.1| ribosomal protein S28 [Prunus persica]
Length = 65
Score = 54.7 bits (130), Expect(2) = 2e-09
Identities = 29/42 (69%), Positives = 34/42 (80%), Gaps = 1/42 (2%)
Frame = -2
Query: 277 RIQGTQVRAKFMGTE-REILRNVKGPVRVGDVLALLETEREA 155
R Q TQVR KF+G + R I+RNVKGPVR GD+L LLE+EREA
Sbjct: 20 RGQVTQVRVKFLGDQNRFIMRNVKGPVREGDILTLLESEREA 61
Score = 32.3 bits (72), Expect(2) = 2e-09
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = -3
Query: 327 MDN*VPHAVATRVLGRTGSRG 265
MD+ V HAV +V+GRTGSRG
Sbjct: 1 MDSTVKHAVVVKVMGRTGSRG 21
>ref|XP_003618578.1| 30S ribosomal protein S28e [Medicago truncatula]
gi|355493593|gb|AES74796.1| 30S ribosomal protein S28e
[Medicago truncatula]
Length = 75
Score = 53.1 bits (126), Expect(2) = 5e-09
Identities = 28/42 (66%), Positives = 33/42 (78%), Gaps = 1/42 (2%)
Frame = -2
Query: 277 RIQGTQVRAKFMGTE-REILRNVKGPVRVGDVLALLETEREA 155
R Q TQVR KF+ + R I+RNVKGPVR GD+L LLE+EREA
Sbjct: 30 RGQVTQVRVKFLDDQNRHIMRNVKGPVREGDILTLLESEREA 71
Score = 32.3 bits (72), Expect(2) = 5e-09
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = -3
Query: 330 RMDN*VPHAVATRVLGRTGSRG 265
RM++ + HAV +V+GRTGSRG
Sbjct: 10 RMESQIKHAVVVKVMGRTGSRG 31
>ref|XP_003520726.1| PREDICTED: 40S ribosomal protein S28-like [Glycine max]
Length = 105
Score = 53.1 bits (126), Expect(2) = 8e-09
Identities = 28/42 (66%), Positives = 33/42 (78%), Gaps = 1/42 (2%)
Frame = -2
Query: 277 RIQGTQVRAKFMGTE-REILRNVKGPVRVGDVLALLETEREA 155
R Q TQVR KF+ + R I+RNVKGPVR GD+L LLE+EREA
Sbjct: 60 RGQVTQVRVKFLDDQNRHIMRNVKGPVREGDILTLLESEREA 101
Score = 31.6 bits (70), Expect(2) = 8e-09
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = -3
Query: 330 RMDN*VPHAVATRVLGRTGSRG 265
RM++ V HA+ +V+GRTGSRG
Sbjct: 40 RMESQVKHALVVKVMGRTGSRG 61