BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00025234
         (1263 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002528570.1| pentatricopeptide repeat-containing protein,...    97   9e-18
ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containi...    95   3e-17
ref|XP_002278152.1| PREDICTED: pentatricopeptide repeat-containi...    95   3e-17
ref|XP_002890375.1| pentatricopeptide repeat-containing protein ...    93   2e-16
gb|AAF79892.1|AC022472_1 Contains similarity to an unknown prote...    91   8e-16

>ref|XP_002528570.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223532014|gb|EEF33825.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 542

 Score = 97.1 bits (240), Expect = 9e-18
 Identities = 49/72 (68%), Positives = 57/72 (79%)
 Frame = +2

Query: 689 SGFVDEALSVLNEFKRQGMELNVVTCTSMIASCSQHGKDTEASELFRVLQIIGVKPKAVT 868
           +G VD+AL V   FK QGMELNVV+ TS+IASCSQ+GKD EA ELFR +Q++GVKP AVT
Sbjct: 318 NGLVDKALQVFRRFKDQGMELNVVSWTSIIASCSQNGKDIEALELFREMQVVGVKPNAVT 377

Query: 869 THYLLLACGNIA 904
              LL ACGNIA
Sbjct: 378 IPCLLPACGNIA 389


>ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score = 95.1 bits (235), Expect = 3e-17
 Identities = 79/228 (34%), Positives = 110/228 (48%), Gaps = 38/228 (16%)
 Frame = +2

Query: 335 DEMLKRDVTIRNLMAYGFCKSGDIQLGLQHFREMPEWPV----FSVNSMPSGLAKCGRDS 502
           D M  RDV + + M  G+ + G ++   + F EM    V     S N M +G    G   
Sbjct: 163 DRMPDRDVVVWSAMIAGYSRLGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYD 222

Query: 503 EAMKLFQEMRNAG--------------IVCLGSLI-------YVV-EGKNS---IANDWD 607
           EA+ +F+ M   G              + CL  ++       YV+ +G  S   + +   
Sbjct: 223 EAVGMFRMMLVQGFWPDGSTVSCVLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSAML 282

Query: 608 EWYVTAGKKKLRNMHFRRSKLVDTSVFSGF---------VDEALSVLNEFKRQGMELNVV 760
           + Y   G  K  +  F   + ++    + F         VD AL V N+FK Q MELNVV
Sbjct: 283 DMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSRNGMVDTALEVFNKFKDQKMELNVV 342

Query: 761 TCTSMIASCSQHGKDTEASELFRVLQIIGVKPKAVTTHYLLLACGNIA 904
           T TS+IASCSQ+GKD EA ELFR +Q  GV+P AVT   L+ ACGNI+
Sbjct: 343 TWTSIIASCSQNGKDLEALELFRDMQAYGVEPNAVTIPSLIPACGNIS 390


>ref|XP_002278152.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09190
           [Vitis vinifera]
          Length = 485

 Score = 95.1 bits (235), Expect = 3e-17
 Identities = 71/220 (32%), Positives = 115/220 (52%), Gaps = 7/220 (3%)
 Frame = +2

Query: 260 EFLSTTQKGILELLSKIYIMSIIHA--DEMLKRDVTIRNLMAYGFCKSGDIQLGLQHFRE 433
           E  S+ + GI++L +    M       DEML RDV + N+M  GFCK GDI++G + FR+
Sbjct: 139 ERFSSIRIGIIDLYTSCGRMEDAKKVFDEMLDRDVIVWNMMIRGFCKVGDIEMGFRLFRQ 198

Query: 434 MPEWPVFSVNSMPSGLAKCGRDSEAMKLFQEMRNAGI----VCLGSLIYVVEGKNSI-AN 598
           M +  V S NSM +GL + GRD EA++LF+EM + G       + +++ V     ++   
Sbjct: 199 MRDRSVVSWNSMIAGLEQSGRDGEALELFREMWDHGFEPDDATVVTILPVCARLGAVDVG 258

Query: 599 DWDEWYVTAGKKKLRNMHFRRSKLVDTSVFSGFVDEALSVLNEFKRQGMELNVVTCTSMI 778
           +W   Y  +  + LR+     + LVD     G ++ A  V NE  ++    NVV+  +MI
Sbjct: 259 EWIHSYAES-SRLLRDFISVGNSLVDFYCKCGILETAWRVFNEMPQK----NVVSWNAMI 313

Query: 779 ASCSQHGKDTEASELFRVLQIIGVKPKAVTTHYLLLACGN 898
           +  + +GK    ++LF  +   GV+P   T   +L  C +
Sbjct: 314 SGLTFNGKGELGADLFEEMINKGVRPNDATFVGVLSCCAH 353


>ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297336217|gb|EFH66634.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 760

 Score = 92.8 bits (229), Expect = 2e-16
 Identities = 73/231 (31%), Positives = 114/231 (49%), Gaps = 38/231 (16%)
 Frame = +2

Query: 335 DEMLKRDVTIRNLMAYGFCKSGDIQLGLQHFREMP----EWPVFSVNSMPSGLAKCGRDS 502
           D M ++DV   + +  G+ + G ++  ++   EM     E  + S N + SG  + G   
Sbjct: 175 DRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIEPNIVSWNGILSGFNRSGYHK 234

Query: 503 EAMKLFQEMRNAGI----VCLGSLIYVVEGKNSI--ANDWDEWYVTAGKKK-------LR 643
           EA+ +FQ+M + G     V + S++  V    ++        + +  G  K       + 
Sbjct: 235 EAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGRQIHGYVIKQGLLKDKCVISAML 294

Query: 644 NMH------------FRRSKLVDTSVFS---------GFVDEALSVLNEFKRQGMELNVV 760
           +M+            F   ++++T V +         G VD+AL +   FK Q MELNVV
Sbjct: 295 DMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLVDKALEMFGLFKEQKMELNVV 354

Query: 761 TCTSMIASCSQHGKDTEASELFRVLQIIGVKPKAVTTHYLLLACGNIAWKG 913
           + TS+IA C+Q+GKD EA ELFR +Q+ GVKP  VT   +L ACGNIA  G
Sbjct: 355 SWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPSMLPACGNIAALG 405


>gb|AAF79892.1|AC022472_1 Contains similarity to an unknown protein F28A21.160 gi|7486269
           from Arabidopsis thaliana BAC F28A21 gi|T04867 and
           contains multiple PPR PF|01535 repeats. EST gb|AI999742
           comes from this gene. This gene may be cut off, partial
           [Arabidopsis thaliana]
          Length = 757

 Score = 90.5 bits (223), Expect = 8e-16
 Identities = 71/231 (30%), Positives = 110/231 (47%), Gaps = 38/231 (16%)
 Frame = +2

Query: 335 DEMLKRDVTIRNLMAYGFCKSGDIQLGLQHFREMP----EWPVFSVNSMPSGLAKCGRDS 502
           D M  +DV   + +   + + G ++  ++   EM     E  + S N + SG  + G   
Sbjct: 175 DRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHK 234

Query: 503 EAMKLFQEMRNAG-------------------IVCLGSLIYVVEGKNSIAND------WD 607
           EA+ +FQ++ + G                   ++ +G LI+    K  +  D        
Sbjct: 235 EAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMI 294

Query: 608 EWYVTAGKKKLRNMHFRRSKLVDTSVFS---------GFVDEALSVLNEFKRQGMELNVV 760
           + Y  +G        F + ++++  V +         G VD+AL +   FK Q MELNVV
Sbjct: 295 DMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVV 354

Query: 761 TCTSMIASCSQHGKDTEASELFRVLQIIGVKPKAVTTHYLLLACGNIAWKG 913
           + TS+IA C+Q+GKD EA ELFR +Q+ GVKP  VT   +L ACGNIA  G
Sbjct: 355 SWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALG 405



 Score = 58.9 bits (141), Expect = 3e-06
 Identities = 57/218 (26%), Positives = 99/218 (45%), Gaps = 13/218 (5%)
 Frame = +2

Query: 314 IMSIIHADEMLKRDVTIRNLMAYGFCKSGDIQLGLQHFR----EMPEWPVFSVNSMPSGL 481
           I+S+ +  EM++  V   N    G  ++G +   L+ F     +  E  V S  S+ +G 
Sbjct: 306 IISLFNQFEMMEAGVC--NAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGC 363

Query: 482 AKCGRDSEAMKLFQEMRNAGI----VCLGSLIYVVEGKNSIANDWDEWYVTAGKKKLRNM 649
           A+ G+D EA++LF+EM+ AG+    V + S++       ++ +             L N+
Sbjct: 364 AQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNV 423

Query: 650 HFRRSKLVDTSVFSGFVDEALSVLNEFKRQGMELNVVTCTSMIASCSQHGKDTEASELFR 829
           H   S L+D     G ++ +  V N    +    N+V   S++   S HGK  E   +F 
Sbjct: 424 HVG-SALIDMYAKCGRINLSQIVFNMMPTK----NLVCWNSLMNGFSMHGKAKEVMSIFE 478

Query: 830 VLQIIGVKPKAVTTHYLLLACGNI-----AWKGFLVLN 928
            L    +KP  ++   LL ACG +      WK F +++
Sbjct: 479 SLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMS 516