BLASTX nr result
ID: Cnidium21_contig00025209
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cnidium21_contig00025209
(742 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002308078.1| predicted protein [Populus trichocarpa] gi|2... 114 6e-42
emb|CBI20033.3| unnamed protein product [Vitis vinifera] 118 4e-41
ref|XP_002268032.1| PREDICTED: pentatricopeptide repeat-containi... 118 4e-41
ref|XP_002528752.1| pentatricopeptide repeat-containing protein,... 107 5e-40
emb|CBI25159.3| unnamed protein product [Vitis vinifera] 110 6e-39
>ref|XP_002308078.1| predicted protein [Populus trichocarpa] gi|222854054|gb|EEE91601.1|
predicted protein [Populus trichocarpa]
Length = 373
Score = 114 bits (284), Expect(2) = 6e-42
Identities = 53/94 (56%), Positives = 71/94 (75%)
Frame = -1
Query: 742 LVERLCGEGEMGRAKELINELWGNGNAPSSITCTTLIEGLRSSGRVEEAIELLDRMLRDD 563
LV+ LC + RA E+++ELW NGN PS I+CTTLIEGLR SGR EEA L++RML+++
Sbjct: 221 LVDMLCKKRMADRALEVLDELWRNGNIPSMISCTTLIEGLRKSGRREEAFGLMERMLKEN 280
Query: 562 IVPDSVTYNCVLQDMCGSGKTVLANKLRFIGFKK 461
IVPD +T+NC+L D+C G+TV NKLR + +K
Sbjct: 281 IVPDIMTFNCLLHDLCNEGRTVDGNKLRLLASRK 314
Score = 83.6 bits (205), Expect(2) = 6e-42
Identities = 41/59 (69%), Positives = 49/59 (83%)
Frame = -2
Query: 477 LLASRKGLCPDSVTYNFLVSGYTREGRRKEGEALVEEMLDKDLIPGIATYNRLMAGLAK 301
LLASRKGL D +TY+ LVSG REG+RKEGEALV+EMLDK+ IP +ATYNR + GL+K
Sbjct: 309 LLASRKGLDVDEMTYDILVSGCIREGKRKEGEALVDEMLDKEFIPDLATYNRFIDGLSK 367
Score = 39.7 bits (91), Expect(2) = 7e-07
Identities = 21/60 (35%), Positives = 31/60 (51%)
Frame = -1
Query: 661 PSSITCTTLIEGLRSSGRVEEAIELLDRMLRDDIVPDSVTYNCVLQDMCGSGKTVLANKL 482
PS + LI G G + AI + DRML+D + PD T+N ++ C + LA +L
Sbjct: 73 PSVVVYNILINGCVKCGEHDRAIGVYDRMLKDRVKPDVFTFNILISSYCRNYMFELALEL 132
Score = 39.7 bits (91), Expect(2) = 7e-07
Identities = 20/55 (36%), Positives = 32/55 (58%)
Frame = -2
Query: 462 KGLCPDSVTYNFLVSGYTREGRRKEGEALVEEMLDKDLIPGIATYNRLMAGLAKK 298
KG P+ V++N L+ G+ RE + +EG +V EM+D T+ L+ GL K+
Sbjct: 139 KGCSPNVVSFNTLIKGFFRERKFEEGVKMVYEMIDLGCEISSVTFEILVDGLCKE 193
>emb|CBI20033.3| unnamed protein product [Vitis vinifera]
Length = 481
Score = 118 bits (296), Expect(2) = 4e-41
Identities = 55/94 (58%), Positives = 72/94 (76%)
Frame = -1
Query: 742 LVERLCGEGEMGRAKELINELWGNGNAPSSITCTTLIEGLRSSGRVEEAIELLDRMLRDD 563
L+E LCGE + RA EL+++LW GNAPSSI CTTLIEGLR G+ EEA +L+++MLR+
Sbjct: 327 LIEALCGEENVDRALELLDQLWRKGNAPSSIACTTLIEGLRRFGKTEEAFQLMEKMLREG 386
Query: 562 IVPDSVTYNCVLQDMCGSGKTVLANKLRFIGFKK 461
I+PDSVT NC+LQD+C G++ ANKLR + K
Sbjct: 387 ILPDSVTCNCLLQDLCEVGRSFEANKLRLLASSK 420
Score = 76.3 bits (186), Expect(2) = 4e-41
Identities = 36/58 (62%), Positives = 47/58 (81%)
Frame = -2
Query: 477 LLASRKGLCPDSVTYNFLVSGYTREGRRKEGEALVEEMLDKDLIPGIATYNRLMAGLA 304
LLAS KGL D +T+N LV+GY+REG+RKEG+ L++EMLD IP +A+YNRLM GL+
Sbjct: 415 LLASSKGLDSDGMTFNILVNGYSREGKRKEGKRLLDEMLDLGFIPDLASYNRLMNGLS 472
>ref|XP_002268032.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g36240-like [Vitis vinifera]
Length = 480
Score = 118 bits (296), Expect(2) = 4e-41
Identities = 55/94 (58%), Positives = 72/94 (76%)
Frame = -1
Query: 742 LVERLCGEGEMGRAKELINELWGNGNAPSSITCTTLIEGLRSSGRVEEAIELLDRMLRDD 563
L+E LCGE + RA EL+++LW GNAPSSI CTTLIEGLR G+ EEA +L+++MLR+
Sbjct: 326 LIEALCGEENVDRALELLDQLWRKGNAPSSIACTTLIEGLRRFGKTEEAFQLMEKMLREG 385
Query: 562 IVPDSVTYNCVLQDMCGSGKTVLANKLRFIGFKK 461
I+PDSVT NC+LQD+C G++ ANKLR + K
Sbjct: 386 ILPDSVTCNCLLQDLCEVGRSFEANKLRLLASSK 419
Score = 76.3 bits (186), Expect(2) = 4e-41
Identities = 36/58 (62%), Positives = 47/58 (81%)
Frame = -2
Query: 477 LLASRKGLCPDSVTYNFLVSGYTREGRRKEGEALVEEMLDKDLIPGIATYNRLMAGLA 304
LLAS KGL D +T+N LV+GY+REG+RKEG+ L++EMLD IP +A+YNRLM GL+
Sbjct: 414 LLASSKGLDSDGMTFNILVNGYSREGKRKEGKRLLDEMLDLGFIPDLASYNRLMNGLS 471
>ref|XP_002528752.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223531846|gb|EEF33664.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 371
Score = 107 bits (268), Expect(2) = 5e-40
Identities = 50/94 (53%), Positives = 71/94 (75%)
Frame = -1
Query: 742 LVERLCGEGEMGRAKELINELWGNGNAPSSITCTTLIEGLRSSGRVEEAIELLDRMLRDD 563
LV++LC + + A L++ELW NGN PS I+CTTLIEGLR G+ EE+ +L++RML+++
Sbjct: 211 LVDKLCEKKNVDAALYLLDELWRNGNVPSLISCTTLIEGLRKMGKREESFKLMERMLKEN 270
Query: 562 IVPDSVTYNCVLQDMCGSGKTVLANKLRFIGFKK 461
IV D VT+NC+LQD+C G+TV A+KLR + K
Sbjct: 271 IVSDIVTFNCLLQDLCNVGRTVDADKLRLLASSK 304
Score = 83.2 bits (204), Expect(2) = 5e-40
Identities = 42/71 (59%), Positives = 51/71 (71%)
Frame = -2
Query: 477 LLASRKGLCPDSVTYNFLVSGYTREGRRKEGEALVEEMLDKDLIPGIATYNRLMAGLAKK 298
LLAS KGL D +TY LV+GYTREG+ KEGE LV+EMLDK+ IP +ATYNRLM GL K
Sbjct: 299 LLASSKGLEADDMTYYTLVNGYTREGKWKEGEVLVDEMLDKEFIPDLATYNRLMDGLCKS 358
Query: 297 SAHQ*QYLLII 265
+ Q+ +
Sbjct: 359 RSSSTQHFTCV 369
>emb|CBI25159.3| unnamed protein product [Vitis vinifera]
Length = 605
Score = 110 bits (275), Expect(2) = 6e-39
Identities = 51/94 (54%), Positives = 69/94 (73%)
Frame = -1
Query: 742 LVERLCGEGEMGRAKELINELWGNGNAPSSITCTTLIEGLRSSGRVEEAIELLDRMLRDD 563
L+E LCGE + RA EL+++LW GNAPSSI CT IEGLR + EEA +L+++MLR+
Sbjct: 401 LIEALCGEENVDRALELLDQLWRKGNAPSSIACTAFIEGLRRFRKTEEAFQLMEKMLREG 460
Query: 562 IVPDSVTYNCVLQDMCGSGKTVLANKLRFIGFKK 461
I+PDSVT NC+LQD+C G++ AN+LR + K
Sbjct: 461 ILPDSVTCNCLLQDLCEVGRSFEANELRLLASSK 494
Score = 77.0 bits (188), Expect(2) = 6e-39
Identities = 39/65 (60%), Positives = 50/65 (76%), Gaps = 1/65 (1%)
Frame = -2
Query: 477 LLASRKGLCPDSVTYNFLVSGYTREGRRKEGEALVEEMLDKDLIPGIATYNRLMAGLAK- 301
LLAS KGL D +T+N LV+GY+REG+RKEG+ L+ EMLD IP +A+YNRLM GL+
Sbjct: 489 LLASSKGLDSDGMTFNILVNGYSREGKRKEGKRLLNEMLDLGFIPDLASYNRLMNGLSNG 548
Query: 300 KSAHQ 286
S+HQ
Sbjct: 549 GSSHQ 553