BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00024244
         (902 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAA22288.1| polyprotein [Oryza australiensis]                     172   3e-51
gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subc...   160   1e-46
gb|AAR06328.1| putative polyprotein [Oryza sativa Japonica Group]     160   1e-46
gb|ABF97213.1| retrotransposon protein, putative, Ty1-copia subc...   160   4e-46
gb|AAS01945.1| putative polyprotein [Oryza sativa Japonica Group]     160   4e-46

>dbj|BAA22288.1| polyprotein [Oryza australiensis]
          Length = 1317

 Score =  172 bits (435), Expect(2) = 3e-51
 Identities = 91/212 (42%), Positives = 125/212 (58%), Gaps = 4/212 (1%)
 Frame = +2

Query: 23  CVMLASMSTELQKQHEHMDAPTILMHLQELYDVEGRTARYNASRELFRCRMAEGSYVNDH 202
           C+MLA+MS ELQKQ+E  DA T +  L+ +++ + R  R+N S+ LF CR+ EG+ V+ H
Sbjct: 78  CLMLATMSPELQKQYESSDAHTTIQGLRGMFENQARDERFNTSKSLFACRLVEGNPVSPH 137

Query: 203 VLKMINLIERLGNFGFIMDGELSQDLVLQSLPDSFSQFVVNFHMNKMDVSLPELHNMLKT 382
           V+KMI  IE L   GF +  EL+ D++LQSLP SF  F++N+HMN MD +L ELH MLKT
Sbjct: 138 VIKMIGYIESLEKLGFPLSQELATDVILQSLPPSFEPFILNYHMNNMDRTLAELHGMLKT 197

Query: 383 AEANFPSKKSHVLMIGAGTSTXXXXXXXXXXXXAGEK----QHVKSKAKVDPDSKGVCFH 550
            E +      HV+M+                    ++     + K   K    S  VCF+
Sbjct: 198 VEESIQKNGHHVMMMQNAKRKPPVKKLCTKRKLTPDEIASASNAKKGKKGSAASDAVCFY 257

Query: 551 CNKVGHWKRNFKVYLAELKKKKASQTTTSDSG 646
           C + GHWKRN K Y+ +LKKK   Q+TTS SG
Sbjct: 258 CKETGHWKRNCKKYMEDLKKK---QSTTSASG 286



 Score = 57.0 bits (136), Expect(2) = 3e-51
 Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
 Frame = +3

Query: 639 IQELKRSRTLGRDEVILLMXXXXXXXXXXXXSFYVHMPTGKTIVLKNCYYVPSIVRNIVS 818
           +Q ++RSR L R EV L +            +  +H+P+G  + L NCY VP++ +N++S
Sbjct: 316 LQGMRRSRGLRRGEVNLRVGNGASVATVAVGTVPLHLPSGLVLELNNCYCVPTLCQNVIS 375

Query: 819 IPMLDLDGFAFVIENNKCSI-LRD 887
              L  +G+ F   NN CSI LRD
Sbjct: 376 ASCLQAEGYDFRSMNNGCSIYLRD 399


>gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1073

 Score =  160 bits (406), Expect(2) = 1e-46
 Identities = 84/201 (41%), Positives = 119/201 (59%), Gaps = 3/201 (1%)
 Frame = +2

Query: 23  CVMLASMSTELQKQHEHMDAPTILMHLQELYDVEGRTARYNASRELFRCRMAEGSYVNDH 202
           C+MLA+MS ELQ+Q+E +DA TI+  L+ +++ + R  R+N S+ LF CR+AEG+ V+ H
Sbjct: 169 CLMLATMSPELQRQYEALDAHTIITGLRNMFEDQARAERFNTSKSLFACRLAEGNPVSPH 228

Query: 203 VLKMINLIERLGNFGFIMDGELSQDLVLQSLPDSFSQFVVNFHMNKMDVSLPELHNMLKT 382
           V+KMI   E L   GF +  EL+ DL+LQSLP SF  F++NF+MN ++ +L ELH MLKT
Sbjct: 229 VIKMIGYTESLDKLGFPLSRELATDLILQSLPPSFEPFIMNFNMNNLNRTLAELHGMLKT 288

Query: 383 AEANFPSKKSHVLMIGAGTSTXXXXXXXXXXXXAGEKQHVKSKAKVD---PDSKGVCFHC 553
           AE +     +HV+++                          SK KV    P     CF  
Sbjct: 289 AEESIKKNSNHVMVMHKRKPNNKKSGQKRKLNSDEITSTSNSKTKVQKTGPAKDAECFFY 348

Query: 554 NKVGHWKRNFKVYLAELKKKK 616
            + GHWKRN K YL +LK+K+
Sbjct: 349 KETGHWKRNCKKYLEQLKQKQ 369



 Score = 52.8 bits (125), Expect(2) = 1e-46
 Identities = 24/80 (30%), Positives = 43/80 (53%)
 Frame = +3

Query: 639 IQELKRSRTLGRDEVILLMXXXXXXXXXXXXSFYVHMPTGKTIVLKNCYYVPSIVRNIVS 818
           +Q LKRSR+L R  V + +            +  + +P+G  + L NCY +P++ +N++S
Sbjct: 408 LQGLKRSRSLARGRVDIRVGNGERVAVVAVGTMTLSLPSGLVLELNNCYCIPALCKNVIS 467

Query: 819 IPMLDLDGFAFVIENNKCSI 878
              L  +G+ F   +N CS+
Sbjct: 468 ASCLQAEGYGFRSMDNGCSV 487


>gb|AAR06328.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1063

 Score =  160 bits (406), Expect(2) = 1e-46
 Identities = 84/201 (41%), Positives = 119/201 (59%), Gaps = 3/201 (1%)
 Frame = +2

Query: 23  CVMLASMSTELQKQHEHMDAPTILMHLQELYDVEGRTARYNASRELFRCRMAEGSYVNDH 202
           C+MLA+MS ELQ+Q+E +DA TI+  L+ +++ + R  R+N S+ LF CR+AEG+ V+ H
Sbjct: 169 CLMLATMSPELQRQYEALDAHTIITGLRNMFEDQARAERFNTSKSLFACRLAEGNPVSPH 228

Query: 203 VLKMINLIERLGNFGFIMDGELSQDLVLQSLPDSFSQFVVNFHMNKMDVSLPELHNMLKT 382
           V+KMI   E L   GF +  EL+ DL+LQSLP SF  F++NF+MN ++ +L ELH MLKT
Sbjct: 229 VIKMIGYTESLDKLGFPLSRELATDLILQSLPPSFEPFIMNFNMNNLNRTLAELHGMLKT 288

Query: 383 AEANFPSKKSHVLMIGAGTSTXXXXXXXXXXXXAGEKQHVKSKAKVD---PDSKGVCFHC 553
           AE +     +HV+++                          SK KV    P     CF  
Sbjct: 289 AEESIKKNSNHVMVMHKRKPNNKKSGQKRKLNSDEITSTSNSKTKVQKTGPAKDAECFFY 348

Query: 554 NKVGHWKRNFKVYLAELKKKK 616
            + GHWKRN K YL +LK+K+
Sbjct: 349 KETGHWKRNCKKYLEQLKQKQ 369



 Score = 52.8 bits (125), Expect(2) = 1e-46
 Identities = 24/80 (30%), Positives = 43/80 (53%)
 Frame = +3

Query: 639 IQELKRSRTLGRDEVILLMXXXXXXXXXXXXSFYVHMPTGKTIVLKNCYYVPSIVRNIVS 818
           +Q LKRSR+L R  V + +            +  + +P+G  + L NCY +P++ +N++S
Sbjct: 408 LQGLKRSRSLARGRVDIRVGNGERVAVVAVGTMTLSLPSGLVLELNNCYCIPALCKNVIS 467

Query: 819 IPMLDLDGFAFVIENNKCSI 878
              L  +G+ F   +N CS+
Sbjct: 468 ASCLQAEGYGFRSMDNGCSV 487


>gb|ABF97213.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1142

 Score =  160 bits (406), Expect(2) = 4e-46
 Identities = 84/201 (41%), Positives = 119/201 (59%), Gaps = 3/201 (1%)
 Frame = +2

Query: 23  CVMLASMSTELQKQHEHMDAPTILMHLQELYDVEGRTARYNASRELFRCRMAEGSYVNDH 202
           C+MLA+MS +LQ+Q+E +DA TI+  L+ + + + R  R N S+ LF CR+AEG+ V+ H
Sbjct: 129 CLMLATMSPKLQRQYEALDAHTIITGLRNMSEDQARAERSNTSKSLFACRLAEGNPVSPH 188

Query: 203 VLKMINLIERLGNFGFIMDGELSQDLVLQSLPDSFSQFVVNFHMNKMDVSLPELHNMLKT 382
           V+KMI   E L   GF ++ EL  DL+LQSLP SF  F++NF+MN ++ +L ELH MLKT
Sbjct: 189 VIKMIGYTESLDKLGFPLNRELVTDLILQSLPPSFEPFIMNFNMNNLNRTLAELHGMLKT 248

Query: 383 AEANFPSKKSHVLMIGAGTSTXXXXXXXXXXXXAGEKQHVKSKAKVD---PDSKGVCFHC 553
           AE +     +HV+++                          SK KV    P     CF C
Sbjct: 249 AEESIKKNSNHVMVMHKRKPNNKKSGQKRKLNSDEITSTSNSKTKVQKTGPAKDAECFFC 308

Query: 554 NKVGHWKRNFKVYLAELKKKK 616
            + GHWKRN+K YL +LK+K+
Sbjct: 309 KETGHWKRNYKKYLEQLKQKQ 329



 Score = 51.2 bits (121), Expect(2) = 4e-46
 Identities = 24/85 (28%), Positives = 46/85 (54%)
 Frame = +3

Query: 639 IQELKRSRTLGRDEVILLMXXXXXXXXXXXXSFYVHMPTGKTIVLKNCYYVPSIVRNIVS 818
           +Q LKRSR+L R EV + +            +  + +P+G  + L NCY + ++ +N++S
Sbjct: 368 LQGLKRSRSLARGEVDIRVGNGARVAAVAVGTMPLSLPSGIVLELNNCYCIRALCKNVIS 427

Query: 819 IPMLDLDGFAFVIENNKCSILRDNV 893
              L  +G+ F   +N CS+  +++
Sbjct: 428 ASCLQAEGYGFRSVDNGCSVYYNDI 452


>gb|AAS01945.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1084

 Score =  160 bits (406), Expect(2) = 4e-46
 Identities = 84/201 (41%), Positives = 119/201 (59%), Gaps = 3/201 (1%)
 Frame = +2

Query: 23  CVMLASMSTELQKQHEHMDAPTILMHLQELYDVEGRTARYNASRELFRCRMAEGSYVNDH 202
           C+MLA+MS +LQ+Q+E +DA TI+  L+ + + + R  R N S+ LF CR+AEG+ V+ H
Sbjct: 56  CLMLATMSPKLQRQYEALDAHTIITGLRNMSEDQARAERSNTSKSLFACRLAEGNPVSPH 115

Query: 203 VLKMINLIERLGNFGFIMDGELSQDLVLQSLPDSFSQFVVNFHMNKMDVSLPELHNMLKT 382
           V+KMI   E L   GF ++ EL  DL+LQSLP SF  F++NF+MN ++ +L ELH MLKT
Sbjct: 116 VIKMIGYTESLDKLGFPLNRELVTDLILQSLPPSFEPFIMNFNMNNLNRTLAELHGMLKT 175

Query: 383 AEANFPSKKSHVLMIGAGTSTXXXXXXXXXXXXAGEKQHVKSKAKVD---PDSKGVCFHC 553
           AE +     +HV+++                          SK KV    P     CF C
Sbjct: 176 AEESIKKNSNHVMVMHKRKPNNKKSGQKRKLNSDEITSTSNSKTKVQKTGPAKDAECFFC 235

Query: 554 NKVGHWKRNFKVYLAELKKKK 616
            + GHWKRN+K YL +LK+K+
Sbjct: 236 KETGHWKRNYKKYLEQLKQKQ 256



 Score = 51.2 bits (121), Expect(2) = 4e-46
 Identities = 24/85 (28%), Positives = 46/85 (54%)
 Frame = +3

Query: 639 IQELKRSRTLGRDEVILLMXXXXXXXXXXXXSFYVHMPTGKTIVLKNCYYVPSIVRNIVS 818
           +Q LKRSR+L R EV + +            +  + +P+G  + L NCY + ++ +N++S
Sbjct: 295 LQGLKRSRSLARGEVDIRVGNGARVAAVAVGTMPLSLPSGIVLELNNCYCIRALCKNVIS 354

Query: 819 IPMLDLDGFAFVIENNKCSILRDNV 893
              L  +G+ F   +N CS+  +++
Sbjct: 355 ASCLQAEGYGFRSVDNGCSVYYNDI 379