BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00024025
         (406 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]      182   2e-44
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]      182   2e-44
ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycoper...   169   2e-40
gb|AAT38687.2| RNA-directed RNA polymerase, putative [Solanum de...   169   2e-40
gb|AAT38751.2| RNA-directed RNA polymerase, putative [Solanum de...   169   2e-40

>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score =  182 bits (463), Expect = 2e-44
 Identities = 88/138 (63%), Positives = 108/138 (78%), Gaps = 3/138 (2%)
 Frame = +1

Query: 1   PGPAIDDKFYQLVG---INEAFTEHALEKLNNLKECCYDPVKWFSEEYIKYSTSRRQSIS 171
           PGPA+DD FY+LV    +++ + +HALEKL  L+ECCY+P +W  EEY  +S SR+   S
Sbjct: 295 PGPALDDTFYRLVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGS 354

Query: 172 PAIPLDAGLVYVHRVQITPSRVFFCGPEVNVSNRVLRNFSKDINNFLRVSFVDEEWNKLF 351
           P I LD GLVYV RVQITPSRV+FCGPE+NVSNRVLR F  DI+NFLR+SFVDEE  K+ 
Sbjct: 355 PTISLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIH 414

Query: 352 STDLYARKRKTGIYKRIL 405
           ST++ AR R+TGIYKRIL
Sbjct: 415 STNVQARGRRTGIYKRIL 432


>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score =  182 bits (463), Expect = 2e-44
 Identities = 88/138 (63%), Positives = 108/138 (78%), Gaps = 3/138 (2%)
 Frame = +1

Query: 1   PGPAIDDKFYQLVG---INEAFTEHALEKLNNLKECCYDPVKWFSEEYIKYSTSRRQSIS 171
           PGPA+DD FY+LV    +++ + +HALEKL  L+ECCY+P +W  EEY  +S SR+   S
Sbjct: 295 PGPALDDTFYRLVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGS 354

Query: 172 PAIPLDAGLVYVHRVQITPSRVFFCGPEVNVSNRVLRNFSKDINNFLRVSFVDEEWNKLF 351
           P I LD GLVYV RVQITPSRV+FCGPE+NVSNRVLR F  DI+NFLR+SFVDEE  K+ 
Sbjct: 355 PTISLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIH 414

Query: 352 STDLYARKRKTGIYKRIL 405
           ST++ AR R+TGIYKRIL
Sbjct: 415 STNVQARGRRTGIYKRIL 432


>ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum]
           gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase
           [Solanum lycopersicum]
          Length = 1114

 Score =  169 bits (429), Expect = 2e-40
 Identities = 86/143 (60%), Positives = 106/143 (74%), Gaps = 8/143 (5%)
 Frame = +1

Query: 1   PGPAIDDKFYQLVGI---NEAFTEHALEKLNNLKECCYDPVKWFSEEYIKYSTSRRQSIS 171
           PGPA++  F++LV     N A  EHALEKL  +KECCYDPV+W +E+Y  Y   R+   S
Sbjct: 286 PGPALNVYFFRLVDPRRRNVACIEHALEKLYYIKECCYDPVRWLTEQYDGYLKGRQPPKS 345

Query: 172 PAIPLDAGLVYVHRVQITPSRVFFCGPEVNVSNRVLRNFSKDINNFLRVSFVDEEWNKLF 351
           P+I LD GLVYV RV +TP +V+FCGPEVNVSNRVLRN+S+DI+NFLRVSFVDEEW KL+
Sbjct: 346 PSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLY 405

Query: 352 STDLYARKR-----KTGIYKRIL 405
           STDL  +       +T IY+RIL
Sbjct: 406 STDLLPKASTGSGVRTNIYERIL 428


>gb|AAT38687.2| RNA-directed RNA polymerase, putative [Solanum demissum]
          Length = 1139

 Score =  169 bits (428), Expect = 2e-40
 Identities = 87/143 (60%), Positives = 105/143 (73%), Gaps = 8/143 (5%)
 Frame = +1

Query: 1   PGPAIDDKFYQLVGI---NEAFTEHALEKLNNLKECCYDPVKWFSEEYIKYSTSRRQSIS 171
           PGPA+D  F++LV     N A  E ALEKL  LKECCYDPV+W +E+Y  Y   R+   S
Sbjct: 278 PGPALDVYFFRLVDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKS 337

Query: 172 PAIPLDAGLVYVHRVQITPSRVFFCGPEVNVSNRVLRNFSKDINNFLRVSFVDEEWNKLF 351
           P+I LD GLVYV RV +TP +V+FCGPEVNVSNRVLRN+S+DI+NFLRVSFVDEEW KL+
Sbjct: 338 PSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLY 397

Query: 352 STDLYARKR-----KTGIYKRIL 405
           STDL  +       +T IY+RIL
Sbjct: 398 STDLLPKASTGNGIRTNIYERIL 420


>gb|AAT38751.2| RNA-directed RNA polymerase, putative [Solanum demissum]
          Length = 1180

 Score =  169 bits (428), Expect = 2e-40
 Identities = 87/143 (60%), Positives = 105/143 (73%), Gaps = 8/143 (5%)
 Frame = +1

Query: 1   PGPAIDDKFYQLVGI---NEAFTEHALEKLNNLKECCYDPVKWFSEEYIKYSTSRRQSIS 171
           PGPA+D  F++LV     N A  E ALEKL  LKECCYDPV+W +E+Y  Y   R+   S
Sbjct: 252 PGPALDVYFFRLVDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKS 311

Query: 172 PAIPLDAGLVYVHRVQITPSRVFFCGPEVNVSNRVLRNFSKDINNFLRVSFVDEEWNKLF 351
           P+I LD GLVYV RV +TP +V+FCGPEVNVSNRVLRN+S+DI+NFLRVSFVDEEW KL+
Sbjct: 312 PSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLY 371

Query: 352 STDLYARKR-----KTGIYKRIL 405
           STDL  +       +T IY+RIL
Sbjct: 372 STDLLPKASTGNGIRTNIYERIL 394