BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00024011
         (588 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003601293.1| Pentatricopeptide repeat-containing protein,...   232   3e-59
ref|XP_002511467.1| pentatricopeptide repeat-containing protein,...   231   5e-59
ref|XP_004152457.1| PREDICTED: pentatricopeptide repeat-containi...   228   4e-58
ref|XP_003634254.1| PREDICTED: pentatricopeptide repeat-containi...   224   8e-57
emb|CBI15095.3| unnamed protein product [Vitis vinifera]              224   8e-57

>ref|XP_003601293.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula] gi|355490341|gb|AES71544.1|
           Pentatricopeptide repeat-containing protein, partial
           [Medicago truncatula]
          Length = 317

 Score =  232 bits (592), Expect = 3e-59
 Identities = 111/195 (56%), Positives = 135/195 (69%)
 Frame = +3

Query: 3   PQDITITNLILNTDSKALPQTLEAHNIDWTQDLVHKTLKRLWNHGPKALEFFNILDRHLS 182
           P D T+  L+L +D K L QTL      WT  LV   LKRLWNHGPKAL+FF  LDRH +
Sbjct: 36  PIDATVAKLVLESDPKTLSQTLSNPTFQWTPLLVDNILKRLWNHGPKALQFFKHLDRHPT 95

Query: 183 YTHSXXXXXXXXXXXXRLREYKTLWTLMTRMKTRQLGPSPKTFAIVIERLVAAGKPDRAV 362
           Y HS            RLREY T W LM RM+  +LGP+PKTFAI+ ER    GK  +AV
Sbjct: 96  YIHSISSFEHAVDIAARLREYNTAWALMGRMRALRLGPTPKTFAILAERYATGGKAHKAV 155

Query: 363 KVFLSMHEHGVIQNLNCFNMFLDVLCKSRRVEMAYNLFKVFRGRFRVDTITYNVLVNGFC 542
           KVFLSMHEHG  Q+LN FN  LDVLCK++RVEMA NLFK  RGRF+ D+++YN++ NG+C
Sbjct: 156 KVFLSMHEHGCHQDLNSFNTILDVLCKTKRVEMANNLFKTLRGRFKCDSVSYNIMANGWC 215

Query: 543 LIKRTPRGLEIMREM 587
           LIKRTP  L++++EM
Sbjct: 216 LIKRTPMALQVLKEM 230


>ref|XP_002511467.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223550582|gb|EEF52069.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 482

 Score =  231 bits (590), Expect = 5e-59
 Identities = 109/196 (55%), Positives = 145/196 (73%), Gaps = 1/196 (0%)
 Frame = +3

Query: 3   PQDITITNLILN-TDSKALPQTLEAHNIDWTQDLVHKTLKRLWNHGPKALEFFNILDRHL 179
           P+  T+  LILN T+S+ L ++L + +I WT  LV+  LKRLWNHGPKAL FF IL  H 
Sbjct: 27  PEATTLAALILNSTNSQTLAESLHSPSIQWTPQLVNTILKRLWNHGPKALHFFKILSHHP 86

Query: 180 SYTHSXXXXXXXXXXXXRLREYKTLWTLMTRMKTRQLGPSPKTFAIVIERLVAAGKPDRA 359
           SY H             RLR+++TLW L++RM++ +LGPSP+TFAI+ ER  A GKP RA
Sbjct: 87  SYCHQASSFDHAIDICARLRDFRTLWFLVSRMRSCRLGPSPRTFAIIAERYAAMGKPHRA 146

Query: 360 VKVFLSMHEHGVIQNLNCFNMFLDVLCKSRRVEMAYNLFKVFRGRFRVDTITYNVLVNGF 539
           V VF+SMHE+G  Q+L+ FN  LDVLCKS+RVEMAYNLFK  +G+F+ D ++YN++VNG+
Sbjct: 147 VTVFMSMHEYGCFQDLSSFNTILDVLCKSKRVEMAYNLFKALKGKFKADCVSYNIIVNGW 206

Query: 540 CLIKRTPRGLEIMREM 587
           CLIKRTP+ LE+++EM
Sbjct: 207 CLIKRTPKALEMLKEM 222



 Score = 63.9 bits (154), Expect = 2e-08
 Identities = 47/153 (30%), Positives = 72/153 (47%), Gaps = 3/153 (1%)
 Frame = +3

Query: 138 PKALEFFN-ILDRHLSYTHSXXXXXXXXXXXXRLREYKTLWTLMTRMKTRQLGPSPKTFA 314
           PKALE    +++R L  T +            R  +    W     MK R+      T+ 
Sbjct: 213 PKALEMLKEMVERGL--TPNLTTYNIMLNGYFRAGQTNEAWGFFLEMKKRKCDIDVVTYT 270

Query: 315 IVIERLVAAGKPDRAVKVFLSMHEHGVIQNLNCFNMFLDVLCKSRRVEMAYNLFK--VFR 488
            VI  L   G+  RA  VF  M + GV+ ++  FN  + +LCK   VE A  +F+  V R
Sbjct: 271 SVIHGLGVVGEIKRARNVFNQMVKDGVLPSVATFNALIQILCKKDSVENAILIFEEMVKR 330

Query: 489 GRFRVDTITYNVLVNGFCLIKRTPRGLEIMREM 587
           G +  ++ITYN+++ G C +    R +E+M  M
Sbjct: 331 G-YVPNSITYNLVIRGLCHVGEMQRAMELMERM 362


>ref|XP_004152457.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Cucumis sativus]
           gi|449487784|ref|XP_004157799.1| PREDICTED:
           pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Cucumis sativus]
          Length = 502

 Score =  228 bits (582), Expect = 4e-58
 Identities = 108/191 (56%), Positives = 141/191 (73%), Gaps = 1/191 (0%)
 Frame = +3

Query: 18  ITNLILNTDSKALPQTLEAHNIDWTQDLVHKTLKRLWNHGPKALEFFNILDRHLSYTHSX 197
           I  L+L +D K+L  +L    + +T +LV K LKRLW HGPKAL+FF  L+ H SY HS 
Sbjct: 53  IATLVLESDPKSLRGSLHGLQLQFTPELVDKVLKRLWFHGPKALQFFKHLEYHPSYAHSA 112

Query: 198 XXXXXXXXXXXRLREYKTLWTLMTRMKTRQLGPSPKTFAIVIERLVAAGKPDRAVKVFLS 377
                      R+R+YKT+W L+ RM+ R++GPS KTFAI+ ER VAAGKPDRA+KVFLS
Sbjct: 113 SSFDHAIDIAGRMRDYKTVWALVARMRARRIGPSSKTFAIIAERFVAAGKPDRAIKVFLS 172

Query: 378 MHEHGVIQNLNCFNMFLDVLCKSRRVEMAY-NLFKVFRGRFRVDTITYNVLVNGFCLIKR 554
           M EHG  Q+L+ FN  LD+LCKS+RVEMAY NLFKV RG+F+ D ++YN++ NG+CLIKR
Sbjct: 173 MREHGCPQDLHSFNTILDILCKSKRVEMAYNNLFKVLRGKFKADVVSYNIIANGWCLIKR 232

Query: 555 TPRGLEIMREM 587
           TP+ LE+++EM
Sbjct: 233 TPKALEVLKEM 243


>ref|XP_003634254.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Vitis vinifera]
          Length = 450

 Score =  224 bits (571), Expect = 8e-57
 Identities = 114/224 (50%), Positives = 143/224 (63%), Gaps = 29/224 (12%)
 Frame = +3

Query: 3   PQDITITNLILNTDSKALPQTLEAHNIDWTQDLVHKTLKRLWNHGPKALEFFNILDRHLS 182
           PQD TI NL+L TDS+ L +TLE + ++WT +LV + LK LWNHGPKAL+FF  LD H +
Sbjct: 37  PQDATIVNLVLKTDSQTLTRTLEKYPVEWTPNLVDRVLKLLWNHGPKALQFFKSLDYHPT 96

Query: 183 YTHSXXXXXXXXXXXXRLREYKTLWTLMTRMKTRQLGPSPKTFAIVIERLVAAGKPDRAV 362
           Y H             RLR+YKTLWTL+ RM+TR+LGP+PKTFAI+ ER V+AGKPDRA+
Sbjct: 97  YAHVSSSFDHAIDIAGRLRDYKTLWTLVDRMRTRRLGPNPKTFAIITERYVSAGKPDRAI 156

Query: 363 KVFLSMHEHGVIQNLNCFNMFLDVLCKSRRVEMAYN-LFKVFRGRFR------------- 500
           K+F SMHEHG +Q+LN FN  LDVLCKS+RVEMA N LFKVFRGRFR             
Sbjct: 157 KIFFSMHEHGCVQDLNSFNTILDVLCKSKRVEMADNKLFKVFRGRFRILLKGFFRAGQLK 216

Query: 501 ---------------VDTITYNVLVNGFCLIKRTPRGLEIMREM 587
                          +D +TY  +V+GF +     +   +  EM
Sbjct: 217 EAWEFFLQMKKRKCEIDVVTYTTVVHGFGVAGEVRKAQRVFNEM 260



 Score = 68.6 bits (166), Expect = 8e-10
 Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 1/120 (0%)
 Frame = +3

Query: 231 RLREYKTLWTLMTRMKTRQLGPSPKTFAIVIERLVAAGKPDRAVKVFLSMHEHGVIQNLN 410
           R  + K  W    +MK R+      T+  V+     AG+  +A +VF  M   GV+ ++ 
Sbjct: 211 RAGQLKEAWEFFLQMKKRKCEIDVVTYTTVVHGFGVAGEVRKAQRVFNEMIGEGVLPSVA 270

Query: 411 CFNMFLDVLCKSRRVEMAYNLF-KVFRGRFRVDTITYNVLVNGFCLIKRTPRGLEIMREM 587
            +N F+ VLCK   VE A ++F ++ R  +  ++ TYNV++ G C + R  + +E M  M
Sbjct: 271 TYNAFIQVLCKKDNVENAISVFEEMLRKGYMPNSTTYNVVIRGLCHVGRMEKAMEFMARM 330


>emb|CBI15095.3| unnamed protein product [Vitis vinifera]
          Length = 815

 Score =  224 bits (571), Expect = 8e-57
 Identities = 113/216 (52%), Positives = 142/216 (65%), Gaps = 21/216 (9%)
 Frame = +3

Query: 3   PQDITITNLILNTDSKALPQTLEAHNIDWTQDLVHKTLKRLWNHGPKALEFFNILDRHLS 182
           PQD TI NL+L TDS+ L +TLE + ++WT +LV + LK LWNHGPKAL+FF  LD H +
Sbjct: 37  PQDATIVNLVLKTDSQTLTRTLEKYPVEWTPNLVDRVLKLLWNHGPKALQFFKSLDYHPT 96

Query: 183 YTHSXXXXXXXXXXXXRLREYKTLWTLMTRMKTRQLGPSPKTFAIVIERLVAAGKPDRAV 362
           Y H             RLR+YKTLWTL+ RM+TR+LGP+PKTFAI+ ER V+AGKPDRA+
Sbjct: 97  YAHVSSSFDHAIDIAGRLRDYKTLWTLVDRMRTRRLGPNPKTFAIITERYVSAGKPDRAI 156

Query: 363 KVFLSMHEHGVIQNLNCFNMFLDVLCKSRRVEMAYN-LFKVFRGRFR------------- 500
           K+F SMHEHG +Q+LN FN  LDVLCKS+RVEMA N LFKVFRG FR             
Sbjct: 157 KIFFSMHEHGCVQDLNSFNTILDVLCKSKRVEMADNKLFKVFRGFFRAGQLKEAWEFFLQ 216

Query: 501 -------VDTITYNVLVNGFCLIKRTPRGLEIMREM 587
                  +D +TY  +V+GF +     +   +  EM
Sbjct: 217 MKKRKCEIDVVTYTTVVHGFGVAGEVRKAQRVFNEM 252



 Score = 68.6 bits (166), Expect = 8e-10
 Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 1/120 (0%)
 Frame = +3

Query: 231 RLREYKTLWTLMTRMKTRQLGPSPKTFAIVIERLVAAGKPDRAVKVFLSMHEHGVIQNLN 410
           R  + K  W    +MK R+      T+  V+     AG+  +A +VF  M   GV+ ++ 
Sbjct: 203 RAGQLKEAWEFFLQMKKRKCEIDVVTYTTVVHGFGVAGEVRKAQRVFNEMIGEGVLPSVA 262

Query: 411 CFNMFLDVLCKSRRVEMAYNLF-KVFRGRFRVDTITYNVLVNGFCLIKRTPRGLEIMREM 587
            +N F+ VLCK   VE A ++F ++ R  +  ++ TYNV++ G C + R  + +E M  M
Sbjct: 263 TYNAFIQVLCKKDNVENAISVFEEMLRKGYMPNSTTYNVVIRGLCHVGRMEKAMEFMARM 322