BLASTX nr result
ID: Cnidium21_contig00023911
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Cnidium21_contig00023911 (269 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|72678... 79 3e-13 gb|ABD96948.1| hypothetical protein [Cleome spinosa] 75 4e-12 gb|AAF79357.1|AC007887_16 F15O4.34 [Arabidopsis thaliana] 74 2e-11 gb|AAC33226.1| putative non-LTR retroelement reverse transcripta... 73 2e-11 ref|NP_189068.2| RNA-directed DNA polymerase (reverse transcript... 71 1e-10 >emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|7267871|emb|CAB78214.1| putative protein [Arabidopsis thaliana] Length = 473 Score = 79.3 bits (194), Expect = 3e-13 Identities = 37/76 (48%), Positives = 46/76 (60%) Frame = +3 Query: 42 WNSIRTVGVPPDWTKVVWFPLAIQKCSFTLWLALKNRLLTKTRMQQFGMNTDTKCVLCHN 221 WN IRTV W K VWF AI K +F +WLA+ NRL T RM + M D C+LC+ Sbjct: 293 WNHIRTVSNKVAWYKGVWFAQAIPKHAFCMWLAVHNRLSTGDRMTLWNMGVDATCILCNK 352 Query: 222 ADETVKHIFCTCPFVT 269 A E+ H+F +CPF T Sbjct: 353 ALESRDHLFFSCPFAT 368 >gb|ABD96948.1| hypothetical protein [Cleome spinosa] Length = 539 Score = 75.5 bits (184), Expect = 4e-12 Identities = 33/76 (43%), Positives = 47/76 (61%) Frame = +3 Query: 42 WNSIRTVGVPPDWTKVVWFPLAIQKCSFTLWLALKNRLLTKTRMQQFGMNTDTKCVLCHN 221 WN RTV V W+ +VWFPLAI + +F W + RL TK R+QQ+G+ +D C LC Sbjct: 416 WNLTRTVHVIAPWSSIVWFPLAIPRHAFLHWQVMLFRLPTKDRLQQWGITSDATCRLCDG 475 Query: 222 ADETVKHIFCTCPFVT 269 DE+ +H+F C + + Sbjct: 476 EDESHQHLFFGCTYAS 491 >gb|AAF79357.1|AC007887_16 F15O4.34 [Arabidopsis thaliana] Length = 236 Score = 73.6 bits (179), Expect = 2e-11 Identities = 34/75 (45%), Positives = 44/75 (58%) Frame = +3 Query: 45 NSIRTVGVPPDWTKVVWFPLAIQKCSFTLWLALKNRLLTKTRMQQFGMNTDTKCVLCHNA 224 N +RT+ + DW K VWF + K SF +WLA+ NRL T RM + CVLCHNA Sbjct: 91 NHMRTISMDVDWYKGVWFGHSTPKYSFCVWLAVLNRLSTGDRMTHWNGGQSAACVLCHNA 150 Query: 225 DETVKHIFCTCPFVT 269 ET H+F +C F + Sbjct: 151 PETRDHLFFSCDFAS 165 >gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana] Length = 1529 Score = 73.2 bits (178), Expect = 2e-11 Identities = 31/78 (39%), Positives = 47/78 (60%) Frame = +3 Query: 36 IIWNSIRTVGVPPDWTKVVWFPLAIQKCSFTLWLALKNRLLTKTRMQQFGMNTDTKCVLC 215 + WN++RT +W K VWFP + K SF LWL ++NRL T R++ + C LC Sbjct: 1340 VTWNNVRTHQPQQNWYKGVWFPYSTPKYSFLLWLTVQNRLSTGDRIKAWNSGQLVTCTLC 1399 Query: 216 HNADETVKHIFCTCPFVT 269 +NA+ET H+F +C + + Sbjct: 1400 NNAEETRDHLFFSCQYTS 1417 >ref|NP_189068.2| RNA-directed DNA polymerase (reverse transcriptase)-related protein [Arabidopsis thaliana] gi|332643359|gb|AEE76880.1| RNA-directed DNA polymerase (reverse transcriptase)-related protein [Arabidopsis thaliana] Length = 746 Score = 70.9 bits (172), Expect = 1e-10 Identities = 32/74 (43%), Positives = 42/74 (56%) Frame = +3 Query: 42 WNSIRTVGVPPDWTKVVWFPLAIQKCSFTLWLALKNRLLTKTRMQQFGMNTDTKCVLCHN 221 W + R + +W K VWF A K S W+A+KNRL T RM + D+ CVLCH+ Sbjct: 272 WAATREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHH 331 Query: 222 ADETVKHIFCTCPF 263 ET H+F TCP+ Sbjct: 332 LVETRDHLFFTCPY 345