BLASTX nr result
ID: Cnidium21_contig00023704
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cnidium21_contig00023704
(1115 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002308876.1| chromatin remodeling complex subunit [Populu... 107 8e-46
ref|XP_002277489.1| PREDICTED: putative SWI/SNF-related matrix-a... 103 8e-44
ref|XP_002517285.1| helicase, putative [Ricinus communis] gi|223... 105 2e-43
sp|Q9FF61.1|SM3L1_ARATH RecName: Full=Putative SWI/SNF-related m... 100 4e-39
ref|NP_196132.2| DNA/RNA helicase [Arabidopsis thaliana] gi|2026... 100 4e-39
>ref|XP_002308876.1| chromatin remodeling complex subunit [Populus trichocarpa]
gi|222854852|gb|EEE92399.1| chromatin remodeling complex
subunit [Populus trichocarpa]
Length = 799
Score = 107 bits (268), Expect(2) = 8e-46
Identities = 55/98 (56%), Positives = 69/98 (70%)
Frame = +1
Query: 820 ARQKASGTGVNLAAANRVYLLEPWWNSAV*EQAMDRVHRIRQTKEVTXXXXXXXXXXXXX 999
A KASG G+NLA A+RVYLLEPWWN AV EQAMDRVHRI Q ++VT
Sbjct: 702 ASLKASGAGINLAVASRVYLLEPWWNPAVEEQAMDRVHRIGQEEDVTVVRLIAQSSIEER 761
Query: 1000 XLELQDKKKRMASEAFDRKGGPTETREINIDDIRTLIS 1113
LE+Q++KK++A EAF R+G T+ RE+ IDD+R L+S
Sbjct: 762 ILEMQERKKKLAKEAFGRRGTKTQ-REVGIDDLRALMS 798
Score = 103 bits (257), Expect(2) = 8e-46
Identities = 51/78 (65%), Positives = 60/78 (76%)
Frame = +2
Query: 593 TKISXXXXXXXXSRDQDPTTKYVIFSQFRKMLISLEEPLKNAGFKVLRLDGSMNTKKRSQ 772
+K+S SR ++P K V+FSQF+KML+ LEEPLK AGFK+LRLDGSMN KKR+Q
Sbjct: 625 SKVSALIKLLIASRVENPARKSVVFSQFQKMLVLLEEPLKEAGFKILRLDGSMNAKKRAQ 684
Query: 773 VIKDFGVPAPAGPTVLLA 826
VIK FGVP P GPTVLLA
Sbjct: 685 VIKQFGVPGPDGPTVLLA 702
>ref|XP_002277489.1| PREDICTED: putative SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A
member 3-like 1-like [Vitis vinifera]
Length = 874
Score = 103 bits (257), Expect(2) = 8e-44
Identities = 49/66 (74%), Positives = 58/66 (87%)
Frame = +2
Query: 629 SRDQDPTTKYVIFSQFRKMLISLEEPLKNAGFKVLRLDGSMNTKKRSQVIKDFGVPAPAG 808
SRDQ+P+TK V+FSQFRKML+ LE+PLK AGFK LRLDGSMN K+R+QVI++FG P P G
Sbjct: 712 SRDQNPSTKSVVFSQFRKMLLLLEQPLKAAGFKTLRLDGSMNAKRRAQVIEEFGAPGPNG 771
Query: 809 PTVLLA 826
PTVLLA
Sbjct: 772 PTVLLA 777
Score = 101 bits (251), Expect(2) = 8e-44
Identities = 52/98 (53%), Positives = 67/98 (68%)
Frame = +1
Query: 820 ARQKASGTGVNLAAANRVYLLEPWWNSAV*EQAMDRVHRIRQTKEVTXXXXXXXXXXXXX 999
A KASG G+NL AA+RVYLLEPWWN AV EQAMDRVHRI Q ++V
Sbjct: 777 ASLKASGAGINLTAASRVYLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIARNSIEER 836
Query: 1000 XLELQDKKKRMASEAFDRKGGPTETREINIDDIRTLIS 1113
LELQ++KK++A EAF R+ G + RE+ ++D+R L+S
Sbjct: 837 ILELQERKKKLAKEAFGRR-GLKDRREVGVEDLRMLMS 873
>ref|XP_002517285.1| helicase, putative [Ricinus communis] gi|223543548|gb|EEF45078.1|
helicase, putative [Ricinus communis]
Length = 363
Score = 105 bits (262), Expect(2) = 2e-43
Identities = 50/78 (64%), Positives = 63/78 (80%)
Frame = +2
Query: 593 TKISXXXXXXXXSRDQDPTTKYVIFSQFRKMLISLEEPLKNAGFKVLRLDGSMNTKKRSQ 772
+K+S +RD++PT K VIFSQF+KML+ LEEPLK AGFK+LRLDG+MN KK++Q
Sbjct: 190 SKVSALLNLLMAARDKNPTAKSVIFSQFQKMLVLLEEPLKAAGFKILRLDGTMNAKKKAQ 249
Query: 773 VIKDFGVPAPAGPTVLLA 826
VIK+FG+P P GPTVLLA
Sbjct: 250 VIKEFGIPGPNGPTVLLA 267
Score = 97.8 bits (242), Expect(2) = 2e-43
Identities = 50/98 (51%), Positives = 66/98 (67%)
Frame = +1
Query: 820 ARQKASGTGVNLAAANRVYLLEPWWNSAV*EQAMDRVHRIRQTKEVTXXXXXXXXXXXXX 999
A KAS G+NLAAA++VYLLEPWWN AV EQAMDRVHRI Q ++VT
Sbjct: 267 ASLKASCAGINLAAASKVYLLEPWWNPAVEEQAMDRVHRIGQKEDVTVVRLITRNSIEER 326
Query: 1000 XLELQDKKKRMASEAFDRKGGPTETREINIDDIRTLIS 1113
LE+Q++KK++A EAF R+G + ++ DD+R L+S
Sbjct: 327 ILEMQERKKKLAKEAFGRRG--AKAHDVRTDDLRILMS 362
>sp|Q9FF61.1|SM3L1_ARATH RecName: Full=Putative SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A member
3-like 1; Short=SMARCA3-like protein 1
gi|10178052|dbj|BAB11535.1| helicase-like transcription
factor-like protein [Arabidopsis thaliana]
Length = 881
Score = 99.8 bits (247), Expect(2) = 4e-39
Identities = 52/98 (53%), Positives = 65/98 (66%)
Frame = +1
Query: 820 ARQKASGTGVNLAAANRVYLLEPWWNSAV*EQAMDRVHRIRQTKEVTXXXXXXXXXXXXX 999
A KASGTG+NL AA+RVYL +PWWN AV EQAMDR+HRI Q +EV
Sbjct: 784 ASLKASGTGINLTAASRVYLFDPWWNPAVEEQAMDRIHRIGQKQEVKMIRMIARNSIEER 843
Query: 1000 XLELQDKKKRMASEAFDRKGGPTETREINIDDIRTLIS 1113
LELQ KKK +A+EAF R+ E RE+N++D+ L+S
Sbjct: 844 VLELQQKKKNLANEAFKRRQKKDE-REVNVEDVVALMS 880
Score = 89.4 bits (220), Expect(2) = 4e-39
Identities = 45/78 (57%), Positives = 55/78 (70%)
Frame = +2
Query: 593 TKISXXXXXXXXSRDQDPTTKYVIFSQFRKMLISLEEPLKNAGFKVLRLDGSMNTKKRSQ 772
+K+S SR ++P TK V+FSQFRKML+ LE PLK AGF +LRLDG+M KKR+Q
Sbjct: 707 SKVSALLSLLMASRQENPNTKSVVFSQFRKMLLLLETPLKAAGFTILRLDGAMTVKKRTQ 766
Query: 773 VIKDFGVPAPAGPTVLLA 826
VI +FG P GP VLLA
Sbjct: 767 VIGEFGNPELTGPVVLLA 784
>ref|NP_196132.2| DNA/RNA helicase [Arabidopsis thaliana] gi|20260624|gb|AAM13210.1|
helicase-like transcription factor-like protein
[Arabidopsis thaliana] gi|31711770|gb|AAP68241.1|
At5g05130 [Arabidopsis thaliana]
gi|332003449|gb|AED90832.1| DNA/RNA helicase [Arabidopsis
thaliana]
Length = 862
Score = 99.8 bits (247), Expect(2) = 4e-39
Identities = 52/98 (53%), Positives = 65/98 (66%)
Frame = +1
Query: 820 ARQKASGTGVNLAAANRVYLLEPWWNSAV*EQAMDRVHRIRQTKEVTXXXXXXXXXXXXX 999
A KASGTG+NL AA+RVYL +PWWN AV EQAMDR+HRI Q +EV
Sbjct: 765 ASLKASGTGINLTAASRVYLFDPWWNPAVEEQAMDRIHRIGQKQEVKMIRMIARNSIEER 824
Query: 1000 XLELQDKKKRMASEAFDRKGGPTETREINIDDIRTLIS 1113
LELQ KKK +A+EAF R+ E RE+N++D+ L+S
Sbjct: 825 VLELQQKKKNLANEAFKRRQKKDE-REVNVEDVVALMS 861
Score = 89.4 bits (220), Expect(2) = 4e-39
Identities = 45/78 (57%), Positives = 55/78 (70%)
Frame = +2
Query: 593 TKISXXXXXXXXSRDQDPTTKYVIFSQFRKMLISLEEPLKNAGFKVLRLDGSMNTKKRSQ 772
+K+S SR ++P TK V+FSQFRKML+ LE PLK AGF +LRLDG+M KKR+Q
Sbjct: 688 SKVSALLSLLMASRQENPNTKSVVFSQFRKMLLLLETPLKAAGFTILRLDGAMTVKKRTQ 747
Query: 773 VIKDFGVPAPAGPTVLLA 826
VI +FG P GP VLLA
Sbjct: 748 VIGEFGNPELTGPVVLLA 765