BLASTX nr result

ID: Cnidium21_contig00023593 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00023593
         (1234 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002266510.1| PREDICTED: SKP1-interacting partner 15 [Viti...   468   e-129
ref|XP_002300927.1| predicted protein [Populus trichocarpa] gi|2...   436   e-120
ref|XP_002307489.1| f-box family protein [Populus trichocarpa] g...   428   e-117
ref|NP_565142.1| SKP1-interacting partner 15 [Arabidopsis thalia...   422   e-116
ref|XP_002887662.1| F-box family protein [Arabidopsis lyrata sub...   422   e-115

>ref|XP_002266510.1| PREDICTED: SKP1-interacting partner 15 [Vitis vinifera]
          Length = 374

 Score =  468 bits (1204), Expect = e-129
 Identities = 237/371 (63%), Positives = 274/371 (73%), Gaps = 16/371 (4%)
 Frame = +3

Query: 24   PFYQLSQDTIQQIFSLLPLRQIIISKSVSKFFNQTXXXXXXXXXXXXXXXXAXXXXXXXX 203
            P Y+L QDT+  IFS LPLRQIII +SV KFF QT                         
Sbjct: 5    PIYRLPQDTLHYIFSTLPLRQIIICRSVCKFFYQTLTAPAFMELISTQPPLNLIALRPPH 64

Query: 204  XXXXXXX-----------TLHAFDPNLNQWLRFPLNFLPFSAHQPVASSLGLIYLWADTN 350
                               LH FDP+ NQW+RFPL+FLPF +  PVASSLGL+YLWAD+ 
Sbjct: 65   HHHHHHHHHHNRDVSSHNALHVFDPSSNQWVRFPLSFLPFRSPTPVASSLGLVYLWADSL 124

Query: 351  ---ESTKSLLVCNPLSRCYKILPQLGSAWSRHGSVLVGSPNRVLVLTELAALYYSGGSDN 521
               ES KSL+VCNPL+R +++LPQLGSAWSRHGSVLVGSPNRVLVLTELA LY+SG SD 
Sbjct: 125  NSLESNKSLIVCNPLTRSFQVLPQLGSAWSRHGSVLVGSPNRVLVLTELATLYFSG-SDQ 183

Query: 522  WLKFSSNLPSKPRSPVLIKDSIIALCDVGSPWRAQWKLFTITLQSLQCRSQWTCLEKLEW 701
            WLKFSSNLPSKPRSP+L+ DS++ALCDVGSPWR+QWKLF  TL  LQ    WT L++ EW
Sbjct: 184  WLKFSSNLPSKPRSPILVSDSVLALCDVGSPWRSQWKLFACTLNHLQKSQPWTRLDRHEW 243

Query: 702  GDVFDILKRPRLVKGNGNRILMIGGLKSSFLLNSSCTTILILRLDLETLEWDEAGRMPIE 881
            GDVFDIL+RPRLVKG GN+ILM+GGLKSSF LN+ C+TILILRLDL++LEWDE GRMP E
Sbjct: 244  GDVFDILRRPRLVKGLGNQILMVGGLKSSFSLNAVCSTILILRLDLDSLEWDELGRMPPE 303

Query: 882  MFTCFQESSKFKVFGGGDRVCFSAKRIGKLALWDNS--KGKAEWKWIESVPWNGDGVCRG 1055
            MF CFQESSKFKVFG G+RVCFSAKR+G+LALWD S   GK +W+WI  VP NGDG+ RG
Sbjct: 304  MFRCFQESSKFKVFGAGNRVCFSAKRVGRLALWDYSTETGKGDWRWINGVPGNGDGLFRG 363

Query: 1056 FLFEAGYMASP 1088
            F+F+A   A P
Sbjct: 364  FVFQARLTALP 374


>ref|XP_002300927.1| predicted protein [Populus trichocarpa] gi|222842653|gb|EEE80200.1|
            predicted protein [Populus trichocarpa]
          Length = 376

 Score =  436 bits (1121), Expect = e-120
 Identities = 224/373 (60%), Positives = 268/373 (71%), Gaps = 18/373 (4%)
 Frame = +3

Query: 24   PFYQLSQDTIQQIFSLLPLRQIIISKSVSKFFNQTXXXXXXXXXXXXXXXXAXXXXXXXX 203
            P  +L QDT+ QIFS LPLRQI+I +SV KFFNQ                          
Sbjct: 5    PINRLPQDTLHQIFSSLPLRQIMICRSVCKFFNQMLTSPSFVDLISTQPPLRFLALRPPH 64

Query: 204  XXXXXXXT-----------LHAFDPNLNQWLRFPLNFLPFSAHQPVASSLGLIYLWADTN 350
                               LH FDP+ NQWLRF L+FLPF +  PVAS+ GLIYLW ++ 
Sbjct: 65   HHHHLHHQRQNSHVSSVPYLHVFDPDQNQWLRFSLSFLPFRSPHPVASASGLIYLWGESP 124

Query: 351  ---ESTKSLLVCNPLSRCYKILPQLGSAWSRHGSVLVGSPN-RVLVLTELAALYYSGGS- 515
               ES +SL+VCNPL+R +++LPQLGSAWSRHGSVLV S N RV+VLTELAALY+S  + 
Sbjct: 125  TSIESNRSLVVCNPLTRQFQVLPQLGSAWSRHGSVLVDSVNHRVMVLTELAALYFSNTNK 184

Query: 516  -DNWLKFSSNLPSKPRSPVLIKDSIIALCDVGSPWRAQWKLFTITLQSLQCR-SQWTCLE 689
             ++WL FS+NLPSKPRSP+LI DS+ ALCDVGSPWR+QWKLFT  L  L    + W CLE
Sbjct: 185  TNSWLTFSANLPSKPRSPILISDSVFALCDVGSPWRSQWKLFTCILSKLNNNYNNWVCLE 244

Query: 690  KLEWGDVFDILKRPRLVKGNGNRILMIGGLKSSFLLNSSCTTILILRLDLETLEWDEAGR 869
            + EWGD+FDI+KRPRLV+G GN++LMIGGLKS+F LN+SC+TILILRLDLE LEW+EAGR
Sbjct: 245  RQEWGDIFDIIKRPRLVRGKGNKLLMIGGLKSNFSLNTSCSTILILRLDLERLEWEEAGR 304

Query: 870  MPIEMFTCFQESSKFKVFGGGDRVCFSAKRIGKLALWDNSKGKAEWKWIESVPWNGDGVC 1049
            MP++M+  FQESSK KVFGGGDRVCFSAKR+ KLALWD+  G   W+WIE VP  GDG+C
Sbjct: 305  MPVDMYRSFQESSKLKVFGGGDRVCFSAKRMRKLALWDDCDG-VVWRWIEGVPVGGDGLC 363

Query: 1050 RGFLFEAGYMASP 1088
            RGF+FEAG  A P
Sbjct: 364  RGFVFEAGRTALP 376


>ref|XP_002307489.1| f-box family protein [Populus trichocarpa]
            gi|222856938|gb|EEE94485.1| f-box family protein [Populus
            trichocarpa]
          Length = 374

 Score =  428 bits (1100), Expect = e-117
 Identities = 220/369 (59%), Positives = 265/369 (71%), Gaps = 16/369 (4%)
 Frame = +3

Query: 24   PFYQLSQDTIQQIFSLLPLRQIIISKSVSKFFNQTXXXXXXXXXXXXXXXXAXXXXXXXX 203
            P  +L QDT+ QIFS LPLRQI+I +SV KFFNQ                          
Sbjct: 5    PINRLPQDTLNQIFSSLPLRQIMICRSVCKFFNQMLTSPSFMDLISTQTPLRFLALRPPH 64

Query: 204  XXXXXXXT---------LHAFDPNLNQWLRFPLNFLPFSAHQPVASSLGLIYLWADTN-- 350
                             LH FDP+ NQWLRF L+FLPF + QPVAS+ GL+YLW ++   
Sbjct: 65   HHHHHQRHNSHVSSLPYLHVFDPDQNQWLRFSLSFLPFRSPQPVASASGLLYLWGESPNS 124

Query: 351  -ESTKSLLVCNPLSRCYKILPQLGSAWSRHGSVLVGSPN-RVLVLTELAALYYSGGS--D 518
             ES +SL+VCNPL+R +++LPQLGSAWSRHGSVLV S N RV+VLTELAALY+S  +  +
Sbjct: 125  LESNRSLVVCNPLTRQFQVLPQLGSAWSRHGSVLVDSVNHRVMVLTELAALYFSNTNKTN 184

Query: 519  NWLKFSSNLPSKPRSPVLIKDSIIALCDVGSPWRAQWKLFTITLQSLQ-CRSQWTCLEKL 695
            +WL FS+NLPSKPRSP+LI DS+ ALCDVGS WR+QWKLFT TL +L    + W CL +L
Sbjct: 185  SWLTFSANLPSKPRSPILISDSVFALCDVGSRWRSQWKLFTCTLTNLNNSYNNWVCLGRL 244

Query: 696  EWGDVFDILKRPRLVKGNGNRILMIGGLKSSFLLNSSCTTILILRLDLETLEWDEAGRMP 875
            EWGD+FDI+KRPRLV+G GN++LMIG LKS+F LN SC+TILILRLDL  +EW+EAGRMP
Sbjct: 245  EWGDIFDIIKRPRLVRGKGNKLLMIGVLKSNFSLNPSCSTILILRLDLARMEWEEAGRMP 304

Query: 876  IEMFTCFQESSKFKVFGGGDRVCFSAKRIGKLALWDNSKGKAEWKWIESVPWNGDGVCRG 1055
             EM+  FQESSKFK+FGGGDRVC SAKR+GKLALWD+  G   W+WIE VP  GDG+CRG
Sbjct: 305  SEMYKSFQESSKFKIFGGGDRVCLSAKRVGKLALWDDCDG-VVWRWIEGVPGGGDGLCRG 363

Query: 1056 FLFEAGYMA 1082
            F+FEA   A
Sbjct: 364  FVFEASLTA 372


>ref|NP_565142.1| SKP1-interacting partner 15 [Arabidopsis thaliana]
            gi|75098682|sp|O49279.1|SKI15_ARATH RecName:
            Full=SKP1-interacting partner 15; AltName: Full=F-box
            only protein 3 gi|2829924|gb|AAC00632.1| Unknown protein
            [Arabidopsis thaliana] gi|17473630|gb|AAL38278.1| unknown
            protein [Arabidopsis thaliana] gi|21553606|gb|AAM62699.1|
            F-box protein AtFBX3 [Arabidopsis thaliana]
            gi|30725584|gb|AAP37814.1| At1g76920 [Arabidopsis
            thaliana] gi|332197782|gb|AEE35903.1| SKP1-interacting
            partner 15 [Arabidopsis thaliana]
          Length = 374

 Score =  422 bits (1085), Expect = e-116
 Identities = 219/375 (58%), Positives = 266/375 (70%), Gaps = 18/375 (4%)
 Frame = +3

Query: 18   SPPFYQLSQDTIQQIFSLLPLRQIIISKSVSKFFNQTXXXXXXXXXXXXXXXXAXXXXXX 197
            S P   L  D++ QIFS LP+R I+I +SV KFFNQ                        
Sbjct: 3    SSPVNCLPPDSLHQIFSSLPIRDIMICRSVCKFFNQLLTSQCFIEIISTRPPLNLLALRP 62

Query: 198  XXXXXXXXXT-----------LHAFDPNLNQWLRFPLNFLPFSAHQPVASSLGLIYLWAD 344
                     +           +H +DP  NQW RF L+FLPF + QPVASS GLIYLW D
Sbjct: 63   PHHHHSHRHSGNGHATNIRPYIHVYDPEQNQWFRFNLDFLPFRSPQPVASSSGLIYLWGD 122

Query: 345  T---NESTKSLLVCNPLSRCYKILPQLGSAWSRHGSVLVGSPNRVLVLTELAALYYSGG- 512
            +    ES+KSL+ CNPL+R +K+LPQLGSAWSRHG+VLV S NRV+VLTELAALYYSG  
Sbjct: 123  SIDLAESSKSLVACNPLTRQFKVLPQLGSAWSRHGTVLVDSVNRVMVLTELAALYYSGTV 182

Query: 513  -SDNWLKFSSNLPSKPRSPVLIKDSIIALCDVGSPWRAQWKLFTITLQSLQC-RSQWTCL 686
             ++ WLKFSSNLPSKPRSPVL+  S+ ALCDVGSPWR+QWKLF+  L +L    + W CL
Sbjct: 183  VANQWLKFSSNLPSKPRSPVLMSSSVFALCDVGSPWRSQWKLFSCKLTNLTITHTNWVCL 242

Query: 687  EKLEWGDVFDILKRPRLVKGNGN-RILMIGGLKSSFLLNSSCTTILILRLDLETLEWDEA 863
            EK EWGD+FDI+KRPRL++GNG+ ++LMIGGLKS+F LN +C+TILILRLDLE+LEW+EA
Sbjct: 243  EKHEWGDIFDIIKRPRLLRGNGDSKLLMIGGLKSTFSLNPACSTILILRLDLESLEWEEA 302

Query: 864  GRMPIEMFTCFQESSKFKVFGGGDRVCFSAKRIGKLALWDNSKGKAEWKWIESVPWNGDG 1043
            GRMP+EM+  FQESSKFKVFGGGDRV FSAKR+GKLA+WD  +G   W+WIE VP   DG
Sbjct: 303  GRMPLEMYRGFQESSKFKVFGGGDRVYFSAKRMGKLAMWDCWQG---WRWIEGVPGYADG 359

Query: 1044 VCRGFLFEAGYMASP 1088
            +CRGF+F+A     P
Sbjct: 360  LCRGFVFDAKLTLMP 374


>ref|XP_002887662.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]
            gi|297333503|gb|EFH63921.1| F-box family protein
            [Arabidopsis lyrata subsp. lyrata]
          Length = 374

 Score =  422 bits (1084), Expect = e-115
 Identities = 217/375 (57%), Positives = 266/375 (70%), Gaps = 18/375 (4%)
 Frame = +3

Query: 18   SPPFYQLSQDTIQQIFSLLPLRQIIISKSVSKFFNQTXXXXXXXXXXXXXXXXAXXXXXX 197
            S P  +L  D++ QIFS LPLR I++ +SV KFFNQ                        
Sbjct: 3    SSPINRLPPDSLHQIFSSLPLRDIMVCRSVCKFFNQLLTSQCFIEIISTRPPLNLLALRP 62

Query: 198  XXXXXXXXXT-----------LHAFDPNLNQWLRFPLNFLPFSAHQPVASSLGLIYLWAD 344
                     +           +H +DP  NQW RF L+FLPF + QPVASS GLIYLW D
Sbjct: 63   PHHHHSHRHSGNGHATNIRPYIHVYDPEQNQWFRFNLDFLPFRSPQPVASSSGLIYLWGD 122

Query: 345  T---NESTKSLLVCNPLSRCYKILPQLGSAWSRHGSVLVGSPNRVLVLTELAALYYSGG- 512
            +    ES+KSL+ CNPL+R +K+LPQLGSAWSRHG+VLV S NRV+VLTELAALYYSG  
Sbjct: 123  SIDLAESSKSLVACNPLTRQFKVLPQLGSAWSRHGTVLVDSVNRVMVLTELAALYYSGTV 182

Query: 513  -SDNWLKFSSNLPSKPRSPVLIKDSIIALCDVGSPWRAQWKLFTITLQSLQC-RSQWTCL 686
             ++ W KFSSNLPSKPRSPVL+  S+ ALCDVGSPWR+QWKLF+  L +L    + W CL
Sbjct: 183  VANQWFKFSSNLPSKPRSPVLMSSSVFALCDVGSPWRSQWKLFSCKLTNLTITHTNWVCL 242

Query: 687  EKLEWGDVFDILKRPRLVKGNGN-RILMIGGLKSSFLLNSSCTTILILRLDLETLEWDEA 863
            EK EWGD+FDI+KRPRL++GNG+ ++LMIGGLKS+F LN +C+TILILRLDLE+LEW+EA
Sbjct: 243  EKHEWGDIFDIIKRPRLLRGNGDSKLLMIGGLKSTFSLNPACSTILILRLDLESLEWEEA 302

Query: 864  GRMPIEMFTCFQESSKFKVFGGGDRVCFSAKRIGKLALWDNSKGKAEWKWIESVPWNGDG 1043
            GRMP+EM+  FQESSKFKVFGGGDRV FSAKR+GKLA+WD  +G   W+WI+ VP   DG
Sbjct: 303  GRMPLEMYRGFQESSKFKVFGGGDRVYFSAKRMGKLAMWDCWEG---WRWIDGVPGYADG 359

Query: 1044 VCRGFLFEAGYMASP 1088
            +CRGF+F+A     P
Sbjct: 360  LCRGFVFDAKLTMMP 374


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