BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00023529
         (901 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycope...   322   6e-86
ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   311   1e-82
ref|XP_002298071.1| RNA polymerase IV subunit [Populus trichocar...   296   6e-78
emb|CBI34757.3| unnamed protein product [Vitis vinifera]              292   6e-77
ref|XP_003611164.1| DNA-directed RNA polymerase subunit beta [Me...   284   2e-74

>gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycopersicum]
          Length = 1138

 Score =  322 bits (826), Expect = 6e-86
 Identities = 163/304 (53%), Positives = 217/304 (71%), Gaps = 6/304 (1%)
 Frame = -3

Query: 899  SEAAYSALDLPISALEASPLLNLKEILE--CGSNKVNNTACLFFSKKLGRWTHGFEYAAL 726
            SEAAY ALD P+SALE+SPLLNLK+ILE   GS     TA +F SK+LGRW HGFEY AL
Sbjct: 579  SEAAYCALDQPVSALESSPLLNLKKILESGAGSRTGEKTASMFLSKRLGRWAHGFEYGAL 638

Query: 725  EAKSRLERLQFVTIVSTVMIMFSPKTCSESHASPWVCQFHINKEMAKRKQIEVQSIIEAL 546
            E K  LERL    +VSTVMI FSP+T   +H  PWVC FHI+KE  K ++++++S+++AL
Sbjct: 639  EVKGHLERLLLSEVVSTVMICFSPETRKSTHNCPWVCHFHIDKENVKTRRLKLRSVLDAL 698

Query: 545  YMKCNSTLVKSKVHLPDLQITCNECS----EKCIATICINVRMVGSNNNCSTQLETLEEM 378
             M+  +   K+   LP+L ITC +CS    +K  + ICI V +V ++ + S+ L+TL ++
Sbjct: 699  NMRYRAATTKAGNDLPNLHITCKDCSVAEVQKEKSEICITVSVVETSKDPSSLLDTLRDV 758

Query: 377  VIPFLLQTVIKGSSNVKKVDILWKDSTSVSTSHKGVSGELYIRVLMSDTCDRSRFWTVLK 198
            VIPFLL+TVIKG S  KKVDILWK+  S S S +G +GELY++V MS++CDR +FW  L 
Sbjct: 759  VIPFLLETVIKGFSAFKKVDILWKELPSPSKSSRGPTGELYLQVFMSESCDRIKFWNALV 818

Query: 197  NDCLQLMELIDWKRSYPEDIQAATSALGIDFAKTQFISKLASAISDTGRAVLPEHLYLVA 18
            + CLQ+ +LIDW+RSYP+D+   T A GID A   F+ KL SA+S+TG+ +LPEHL L A
Sbjct: 819  DSCLQIRDLIDWERSYPDDVHDLTVAYGIDVAWEYFLCKLHSAVSETGKKILPEHLVLAA 878

Query: 17   DCLS 6
            D L+
Sbjct: 879  DSLT 882


>ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
            1-like [Vitis vinifera]
          Length = 1560

 Score =  311 bits (797), Expect = 1e-82
 Identities = 164/304 (53%), Positives = 210/304 (69%), Gaps = 6/304 (1%)
 Frame = -3

Query: 899  SEAAYSALDLPISALEASPLLNLKEILECGSNK--VNNTACLFFSKKLGRWTHGFEYAAL 726
            SEAAYSALD PIS LE SPLLNLK +LECG  K   + T  LF SKKL +  HGFEY AL
Sbjct: 930  SEAAYSALDQPISLLEPSPLLNLKRVLECGLRKSTADRTVSLFLSKKLEKRKHGFEYGAL 989

Query: 725  EAKSRLERLQFVTIVSTVMIMFSPKTCSESHASPWVCQFHINKEMAKRKQIEVQSIIEAL 546
            E K+ LE+L F  IVSTVMI+FSP+  S++H SPWVC FH+ +E+AK++ ++  SII+AL
Sbjct: 990  EVKNHLEKLLFSDIVSTVMIVFSPQNGSKTHFSPWVCHFHVCEEIAKKRSLKPHSIIDAL 1049

Query: 545  YMKCNSTLVKSKVHLPDLQITCNEC----SEKCIATICINVRMVGSNNNCSTQLETLEEM 378
            YMKCNS   +SK++LPDLQIT  +C     ++     CI V +V S  +C  QL+T+ ++
Sbjct: 1050 YMKCNSARAESKINLPDLQITSKDCFVDMEKEDSDCFCITVSIVNSKKSC-IQLDTVRDL 1108

Query: 377  VIPFLLQTVIKGSSNVKKVDILWKDSTSVSTSHKGVSGELYIRVLMSDTCDRSRFWTVLK 198
            VIPFLL  V+KG  +VKKVDILW D+   S   K  SG LY+RV +S  C +  FW VL 
Sbjct: 1109 VIPFLLGAVVKGLLDVKKVDILWNDNPD-SDVLKSSSGRLYLRVYVSGDCGKKNFWGVLM 1167

Query: 197  NDCLQLMELIDWKRSYPEDIQAATSALGIDFAKTQFISKLASAISDTGRAVLPEHLYLVA 18
            + CLQ+M++IDW+RS+P++I       GID     F++ L SAISD G+ VLPEHL LVA
Sbjct: 1168 DACLQIMDMIDWERSHPDNIHDIFVVYGIDAGWKYFLNSLKSAISDIGKTVLPEHLLLVA 1227

Query: 17   DCLS 6
             CLS
Sbjct: 1228 SCLS 1231


>ref|XP_002298071.1| RNA polymerase IV subunit [Populus trichocarpa]
            gi|222845329|gb|EEE82876.1| RNA polymerase IV subunit
            [Populus trichocarpa]
          Length = 1517

 Score =  296 bits (757), Expect = 6e-78
 Identities = 155/305 (50%), Positives = 204/305 (66%), Gaps = 7/305 (2%)
 Frame = -3

Query: 899  SEAAYSALDLPISALEASPLLNLKEILECG--SNKVNNTACLFFSKKLGRWTHGFEYAAL 726
            SEAAYSALD PIS LE SPLLNLK +LECG   N  + T  LF S+KLGR  HGFEYAAL
Sbjct: 945  SEAAYSALDQPISLLEKSPLLNLKNVLECGLKRNSAHQTMSLFLSEKLGRQRHGFEYAAL 1004

Query: 725  EAKSRLERLQFVTIVSTVMIMFSPKTCSESHASPWVCQFHINKEMAKRKQIEVQSIIEAL 546
            E ++ LERL F  IVS V I+FSP++    H SPWVC FH+ KE+ K++ ++V  II+AL
Sbjct: 1005 EVQNHLERLLFSDIVSFVRIIFSPQSDGRMHFSPWVCHFHVYKEIVKKRSLKVHYIIDAL 1064

Query: 545  YMKCNSTLVKSKVHLPDLQITCNECS-----EKCIATICINVRMVGSNNNCSTQLETLEE 381
              +C     KSK   P +QIT   C+     ++   T CI V +V ++ N   +LET+++
Sbjct: 1065 EKQC-----KSKTRFPKVQITSRYCTVADTWKEKKETFCITVTIVETSKNEFIELETIQD 1119

Query: 380  MVIPFLLQTVIKGSSNVKKVDILWKDSTSVSTSHKGVSGELYIRVLMSDTCDRSRFWTVL 201
            ++IPFLL+TVIKG   ++KVDILW D   +  SH  + GEL++RV MS   D++R W  L
Sbjct: 1120 LMIPFLLETVIKGFMEIQKVDILWNDKPKIPKSHNRLRGELFLRVHMSRGSDKTRLWNQL 1179

Query: 200  KNDCLQLMELIDWKRSYPEDIQAATSALGIDFAKTQFISKLASAISDTGRAVLPEHLYLV 21
             +DCL +M+LIDW RS+P++I     A GID     F++ L SA+SD G+ VLPEHL LV
Sbjct: 1180 MDDCLSIMDLIDWARSHPDNIHECCLAYGIDAGWKFFLNNLQSAMSDVGKTVLPEHLLLV 1239

Query: 20   ADCLS 6
            A+CLS
Sbjct: 1240 ANCLS 1244


>emb|CBI34757.3| unnamed protein product [Vitis vinifera]
          Length = 1359

 Score =  292 bits (748), Expect = 6e-77
 Identities = 157/304 (51%), Positives = 203/304 (66%), Gaps = 6/304 (1%)
 Frame = -3

Query: 899  SEAAYSALDLPISALEASPLLNLKEILECGSNK--VNNTACLFFSKKLGRWTHGFEYAAL 726
            SEAAYSALD PIS LE SPLLNLK +LECG  K   + T  LF SKKL +  HGFEY AL
Sbjct: 799  SEAAYSALDQPISLLEPSPLLNLKRVLECGLRKSTADRTVSLFLSKKLEKRKHGFEYGAL 858

Query: 725  EAKSRLERLQFVTIVSTVMIMFSPKTCSESHASPWVCQFHINKEMAKRKQIEVQSIIEAL 546
            E K+ LE+L F  IVSTVMI+FSP+  S++H SPWVC FH+ +E+AK++ ++  SII+AL
Sbjct: 859  EVKNHLEKLLFSDIVSTVMIVFSPQNGSKTHFSPWVCHFHVCEEIAKKRSLKPHSIIDAL 918

Query: 545  YMKCNSTLVKSKVHLPDLQITCNEC----SEKCIATICINVRMVGSNNNCSTQLETLEEM 378
            YMKCNS   +SK++LPDLQIT  +C     ++     CI V +V S  +C  QL+T+ ++
Sbjct: 919  YMKCNSARAESKINLPDLQITSKDCFVDMEKEDSDCFCITVSIVNSKKSC-IQLDTVRDL 977

Query: 377  VIPFLLQTVIKGSSNVKKVDILWKDSTSVSTSHKGVSGELYIRVLMSDTCDRSRFWTVLK 198
            VIPFLL  V+KG   +K  D+L           K  SG LY+RV +S  C +  FW VL 
Sbjct: 978  VIPFLLGAVVKGCC-IKNSDVL-----------KSSSGRLYLRVYVSGDCGKKNFWGVLM 1025

Query: 197  NDCLQLMELIDWKRSYPEDIQAATSALGIDFAKTQFISKLASAISDTGRAVLPEHLYLVA 18
            + CLQ+M++IDW+RS+P++I       GID     F++ L SAISD G+ VLPEHL LVA
Sbjct: 1026 DACLQIMDMIDWERSHPDNIHDIFVVYGIDAGWKYFLNSLKSAISDIGKTVLPEHLLLVA 1085

Query: 17   DCLS 6
             CLS
Sbjct: 1086 SCLS 1089


>ref|XP_003611164.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
            gi|355512499|gb|AES94122.1| DNA-directed RNA polymerase
            subunit beta [Medicago truncatula]
          Length = 1687

 Score =  284 bits (726), Expect = 2e-74
 Identities = 159/327 (48%), Positives = 209/327 (63%), Gaps = 29/327 (8%)
 Frame = -3

Query: 899  SEAAYSALDLPISALEASPLLNLKEILECGSNKV--NNTACLFFSKKLGRWTHGFEYAAL 726
            SEAAYSAL  PIS LEASPLLNLK +LECGS K   + T  LF S+K+G+  +GFEYAAL
Sbjct: 1059 SEAAYSALSQPISLLEASPLLNLKNVLECGSRKKGGDQTVSLFLSEKIGKQRNGFEYAAL 1118

Query: 725  EAKSRLERLQFVTIVSTVMIMFSPKTCSESHASPWVCQFHINKEMAKRKQIEVQSIIEAL 546
            E K+ LER  F  IVSTVMI+F+P+ CS+   SPWVC FH++KE   R+++EV SII++L
Sbjct: 1119 EVKNYLERYMFSNIVSTVMIIFTPQHCSQVKYSPWVCHFHLDKENVTRRKLEVHSIIDSL 1178

Query: 545  YMKCNSTLVKSKVHLPDLQI--------------TCNECSE-------------KCIATI 447
            Y + +S   +SKV LP L+I              TC++C +             +     
Sbjct: 1179 YQQYDSFRRESKVILPSLKISSKSGREVENKEGQTCSKCQDYKANEGGETSVGNEKDGED 1238

Query: 446  CINVRMVGSNNNCSTQLETLEEMVIPFLLQTVIKGSSNVKKVDILWKDSTSVSTSHKGVS 267
            CI V +V  + N S QL+++ + +IPFLLQT IKG   +KKVDILWKD   V+ S+ G +
Sbjct: 1239 CITVAVVEDSKN-SVQLDSVRKSLIPFLLQTAIKGFLEIKKVDILWKDLPKVTKSYNGSA 1297

Query: 266  GELYIRVLMSDTCDRSRFWTVLKNDCLQLMELIDWKRSYPEDIQAATSALGIDFAKTQFI 87
            GELY+RV MS   D   FW  L N C ++M LIDW RS+P++I    SA GID     + 
Sbjct: 1298 GELYLRVTMSSGNDNGTFWGRLINHCHRIMPLIDWTRSHPDNIHHFCSAFGIDAGWQHYF 1357

Query: 86   SKLASAISDTGRAVLPEHLYLVADCLS 6
              L+SA SDTG+++LP+HL LVA+ LS
Sbjct: 1358 HNLSSATSDTGKSILPKHLRLVANSLS 1384