BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00023481
         (1086 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002320427.1| predicted protein [Populus trichocarpa] gi|2...   423   e-116
ref|XP_002303013.1| predicted protein [Populus trichocarpa] gi|2...   423   e-116
ref|XP_002276313.1| PREDICTED: transcription-repair-coupling fac...   415   e-113
ref|XP_003548486.1| PREDICTED: transcription-repair-coupling fac...   414   e-113
ref|XP_002884246.1| hypothetical protein ARALYDRAFT_477305 [Arab...   414   e-113

>ref|XP_002320427.1| predicted protein [Populus trichocarpa] gi|222861200|gb|EEE98742.1|
            predicted protein [Populus trichocarpa]
          Length = 817

 Score =  423 bits (1087), Expect = e-116
 Identities = 223/323 (69%), Positives = 255/323 (78%), Gaps = 1/323 (0%)
 Frame = +1

Query: 121  YKKKHSYLLLSTHKTKIFGINASPTSTQSA-PALKTQSHDDPISILNERIRREQGGKRVH 297
            +  K S+ L +  +T+     A P S+++A P  K ++  DPISILNERIRR+  GKR  
Sbjct: 32   HNHKPSFSLTNAVRTQ----TAVPFSSRTATPKYKIETEQDPISILNERIRRQHHGKREG 87

Query: 298  RPKLVDSGETDKYIQMVKLQQQRGLHKLKTNREAASSSSNHAFSYKVDPYTLCPGDYVVH 477
               ++DS E D+YIQMVK QQQRGL KLK +R A        FSYKVDPYTL  GDYVVH
Sbjct: 88   SRPIMDSEEADQYIQMVKEQQQRGLQKLKGDRVAKEGD---VFSYKVDPYTLRSGDYVVH 144

Query: 478  KKVGIGRFVGIKFDVAGRNDSKAAPIEYVFIEYADAMAKLPVHQASRFLYRYNLPNENKK 657
            KKVGIGRF GIKFDV  +  S+A  IEYVFIEYAD MAKLPV QASR LYRYNLPNE K+
Sbjct: 145  KKVGIGRFFGIKFDVP-KGSSEA--IEYVFIEYADGMAKLPVMQASRMLYRYNLPNETKR 201

Query: 658  PRVLSKLNDTSAWEKRRVKGKVAVQKMVVDLMELYLHRLKQKRPAYPRTAAMSEFASHFP 837
            PR LSKL+DT AWE+R+ KGKVA+QKMVVDLMELYLHRLKQ+RP YP+T  M+EFA+ FP
Sbjct: 202  PRTLSKLSDTGAWERRKTKGKVAIQKMVVDLMELYLHRLKQRRPPYPKTPFMAEFAAQFP 261

Query: 838  YDPTPDQKQAIIDVETDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMILAP 1017
            Y+PTPDQK A IDVE DL +RETPMDRLICGDVGFGKTEVALRAIFC+VSAGKQAM+LAP
Sbjct: 262  YEPTPDQKLAFIDVERDLNQRETPMDRLICGDVGFGKTEVALRAIFCIVSAGKQAMVLAP 321

Query: 1018 TIVLAKQHFDVISARFSRYHGVK 1086
            TIVLAKQHFDVIS RFS+Y  +K
Sbjct: 322  TIVLAKQHFDVISERFSKYSHIK 344


>ref|XP_002303013.1| predicted protein [Populus trichocarpa] gi|222844739|gb|EEE82286.1|
            predicted protein [Populus trichocarpa]
          Length = 939

 Score =  423 bits (1087), Expect = e-116
 Identities = 226/331 (68%), Positives = 260/331 (78%), Gaps = 3/331 (0%)
 Frame = +1

Query: 103  SILYP-NYKKKHSYLLLSTHKTKIFGINASPTSTQSAPALKTQSHDDPISILNERIRREQ 279
            S+ YP  +K + S+ L +   T+     +S T+T   P  K +S  DPISILNERIRR+ 
Sbjct: 25   SLKYPCRHKHRPSFSLTNAAHTQTALPFSSRTTT---PKYKIESEQDPISILNERIRRQH 81

Query: 280  GGKRV--HRPKLVDSGETDKYIQMVKLQQQRGLHKLKTNREAASSSSNHAFSYKVDPYTL 453
             GKR   +   ++DS E D+YIQMVK QQQRGL KLK +R A        FSYKVDPYTL
Sbjct: 82   HGKREGSNSKPIMDSEEADQYIQMVKEQQQRGLQKLKGDRVAKEGD---VFSYKVDPYTL 138

Query: 454  CPGDYVVHKKVGIGRFVGIKFDVAGRNDSKAAPIEYVFIEYADAMAKLPVHQASRFLYRY 633
              GDYVVHKKVGIGRFVGIKFD++ +  S+A  IEYVFIEYAD MAKLPV QASR LYRY
Sbjct: 139  SSGDYVVHKKVGIGRFVGIKFDMS-KGSSEA--IEYVFIEYADGMAKLPVKQASRMLYRY 195

Query: 634  NLPNENKKPRVLSKLNDTSAWEKRRVKGKVAVQKMVVDLMELYLHRLKQKRPAYPRTAAM 813
            NLPN+ KKPR LSKL+D  AWE+R+ KGKVA+QKMVVDLMELYLHRLKQ+RP YP+T AM
Sbjct: 196  NLPNDTKKPRTLSKLSDNGAWERRKTKGKVAIQKMVVDLMELYLHRLKQRRPPYPKTPAM 255

Query: 814  SEFASHFPYDPTPDQKQAIIDVETDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 993
             +F++ FPY+PTPDQKQA IDV  DLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG
Sbjct: 256  VDFSAQFPYEPTPDQKQAFIDVMRDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 315

Query: 994  KQAMILAPTIVLAKQHFDVISARFSRYHGVK 1086
            KQAM+LAPTIVLA+QHFDVIS RFS+Y  +K
Sbjct: 316  KQAMVLAPTIVLARQHFDVISERFSKYPHIK 346


>ref|XP_002276313.1| PREDICTED: transcription-repair-coupling factor-like [Vitis vinifera]
          Length = 823

 Score =  415 bits (1066), Expect = e-113
 Identities = 211/289 (73%), Positives = 237/289 (82%)
 Frame = +1

Query: 220  KTQSHDDPISILNERIRREQGGKRVHRPKLVDSGETDKYIQMVKLQQQRGLHKLKTNREA 399
            + +   D I+ILNERIRREQ  + V R  +VDS E DKYIQ+VK QQ+RGL KLK  R  
Sbjct: 68   RMEPESDDITILNERIRREQSKRDVSRAPVVDSEEADKYIQLVKEQQRRGLQKLKGERVG 127

Query: 400  ASSSSNHAFSYKVDPYTLCPGDYVVHKKVGIGRFVGIKFDVAGRNDSKAAPIEYVFIEYA 579
                 N  FSYKVDPYTL  GDYVVHKKVGIGRFVGIK DV   + +   PIEYVFIEYA
Sbjct: 128  ---KENGQFSYKVDPYTLRSGDYVVHKKVGIGRFVGIKLDVPKDSSN---PIEYVFIEYA 181

Query: 580  DAMAKLPVHQASRFLYRYNLPNENKKPRVLSKLNDTSAWEKRRVKGKVAVQKMVVDLMEL 759
            D MAKLPV QASR LYRYNLP+E+K+PR LSKL+DTS WE+RR+KG+VA+QKMVVDLMEL
Sbjct: 182  DGMAKLPVKQASRMLYRYNLPSESKRPRTLSKLSDTSIWERRRIKGRVAIQKMVVDLMEL 241

Query: 760  YLHRLKQKRPAYPRTAAMSEFASHFPYDPTPDQKQAIIDVETDLTERETPMDRLICGDVG 939
            YLHRLKQKRP YP++  M+EF + F Y+PTPDQKQA IDVE DLTERETPMDRLICGDVG
Sbjct: 242  YLHRLKQKRPPYPKSPGMAEFEAQFSYEPTPDQKQAFIDVEEDLTERETPMDRLICGDVG 301

Query: 940  FGKTEVALRAIFCVVSAGKQAMILAPTIVLAKQHFDVISARFSRYHGVK 1086
            FGKTEVALRAIFCVVSAGKQAM+LAPTIVLAKQHFDVI+ RFS+Y  +K
Sbjct: 302  FGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVITERFSKYPNIK 350


>ref|XP_003548486.1| PREDICTED: transcription-repair-coupling factor-like [Glycine max]
          Length = 826

 Score =  414 bits (1065), Expect = e-113
 Identities = 220/335 (65%), Positives = 267/335 (79%), Gaps = 8/335 (2%)
 Frame = +1

Query: 106  ILYPNYKKKHSYLLLSTHKTKIFGINASPTS--------TQSAPALKTQSHDDPISILNE 261
            + YP++ K ++    + +  ++F    SPT+        T S P+ KT+ H+DPI++LNE
Sbjct: 34   LTYPSHPKNNNN---NNNNKRLF---LSPTNAVYTQSPYTPSTPS-KTELHNDPITVLNE 86

Query: 262  RIRREQGGKRVHRPKLVDSGETDKYIQMVKLQQQRGLHKLKTNREAASSSSNHAFSYKVD 441
            RIRR+   K   R  ++DS E  KY++MVK+QQQRGL KLK +RE    S +  FSYKVD
Sbjct: 87   RIRRDLSKKEAFRT-VMDSEEAGKYMKMVKVQQQRGLQKLKGDRE----SKDGVFSYKVD 141

Query: 442  PYTLCPGDYVVHKKVGIGRFVGIKFDVAGRNDSKAAPIEYVFIEYADAMAKLPVHQASRF 621
            PYTL  GDYVVH+KVG+GRFVG++FDVA +N S+  P EYVFIEYAD MAKLPV++A++ 
Sbjct: 142  PYTLRSGDYVVHRKVGVGRFVGMRFDVA-KNSSQ--PTEYVFIEYADGMAKLPVNKAAKM 198

Query: 622  LYRYNLPNENKKPRVLSKLNDTSAWEKRRVKGKVAVQKMVVDLMELYLHRLKQKRPAYPR 801
            LYRY+LPNE KKP+ LSKL+DTSAWEKR+VKGKVA+QKMVVDLMELYLHRLKQ+RP YP+
Sbjct: 199  LYRYSLPNETKKPKALSKLSDTSAWEKRKVKGKVAIQKMVVDLMELYLHRLKQRRPLYPK 258

Query: 802  TAAMSEFASHFPYDPTPDQKQAIIDVETDLTERETPMDRLICGDVGFGKTEVALRAIFCV 981
            + AM+EFA+ FPY+PTPDQK+A IDVE DLTERETPMDRLICGDVGFGKTEVALRAI CV
Sbjct: 259  SPAMAEFAALFPYEPTPDQKRAFIDVERDLTERETPMDRLICGDVGFGKTEVALRAISCV 318

Query: 982  VSAGKQAMILAPTIVLAKQHFDVISARFSRYHGVK 1086
            VSA KQAM+LAPTIVLAKQHFDVIS RFS Y  +K
Sbjct: 319  VSAKKQAMVLAPTIVLAKQHFDVISERFSVYPDIK 353


>ref|XP_002884246.1| hypothetical protein ARALYDRAFT_477305 [Arabidopsis lyrata subsp.
            lyrata] gi|297330086|gb|EFH60505.1| hypothetical protein
            ARALYDRAFT_477305 [Arabidopsis lyrata subsp. lyrata]
          Length = 823

 Score =  414 bits (1063), Expect = e-113
 Identities = 218/345 (63%), Positives = 257/345 (74%)
 Frame = +1

Query: 52   LFFLSNFPSASPFLNPTSILYPNYKKKHSYLLLSTHKTKIFGINASPTSTQSAPALKTQS 231
            +F L +FP   P     S+    + +K S +L     + +    A PT  +  P L   +
Sbjct: 16   VFKLCSFP---PPRRLFSLRLRRFTRKSSSILPFVAVSSLSATAAKPTRWREKPEL---A 69

Query: 232  HDDPISILNERIRREQGGKRVHRPKLVDSGETDKYIQMVKLQQQRGLHKLKTNREAASSS 411
              D IS+LNERIRR+ G +   RP + DS ET+KYIQMVK QQ+RGL KLK  R+   ++
Sbjct: 70   ESDSISLLNERIRRDIGKRETARPAM-DSEETEKYIQMVKEQQERGLQKLKGIRQGTEAA 128

Query: 412  SNHAFSYKVDPYTLCPGDYVVHKKVGIGRFVGIKFDVAGRNDSKAAPIEYVFIEYADAMA 591
                FSYKVDPY+L  GDYVVHKKVGIGRFVGIKFDV       + P+EYVFIEYAD MA
Sbjct: 129  GTGGFSYKVDPYSLLSGDYVVHKKVGIGRFVGIKFDVP---KDSSEPLEYVFIEYADGMA 185

Query: 592  KLPVHQASRFLYRYNLPNENKKPRVLSKLNDTSAWEKRRVKGKVAVQKMVVDLMELYLHR 771
            KLP+ QASR LYRYNLPNE K+PR LS+L+DTS WE+R+ KGKVA+QKMVVDLMELYLHR
Sbjct: 186  KLPLKQASRLLYRYNLPNETKRPRTLSRLSDTSVWERRKTKGKVAIQKMVVDLMELYLHR 245

Query: 772  LKQKRPAYPRTAAMSEFASHFPYDPTPDQKQAIIDVETDLTERETPMDRLICGDVGFGKT 951
            L+QKR  YP+   M++FA+ FPY+ TPDQKQA +DVE DLTERETPMDRLICGDVGFGKT
Sbjct: 246  LRQKRYPYPKNPIMADFAAQFPYNATPDQKQAFLDVEKDLTERETPMDRLICGDVGFGKT 305

Query: 952  EVALRAIFCVVSAGKQAMILAPTIVLAKQHFDVISARFSRYHGVK 1086
            EVALRAIFCVVSAGKQAM+LAPTIVLAKQH+DVIS RFS Y  +K
Sbjct: 306  EVALRAIFCVVSAGKQAMVLAPTIVLAKQHYDVISERFSLYPQIK 350