BLASTX nr result
ID: Cnidium21_contig00023472
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cnidium21_contig00023472
(1758 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002268044.2| PREDICTED: DNA-directed RNA polymerase III s... 359 1e-96
emb|CBI17549.3| unnamed protein product [Vitis vinifera] 352 1e-94
ref|XP_002525112.1| DNA-directed RNA polymerase, putative [Ricin... 310 8e-82
ref|XP_002310208.1| predicted protein [Populus trichocarpa] gi|2... 306 9e-81
gb|AEI98616.1| hypothetical protein 111O18.3 [Coffea canephora] 297 7e-78
>ref|XP_002268044.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC5 [Vitis
vinifera]
Length = 672
Score = 359 bits (922), Expect = 1e-96
Identities = 222/517 (42%), Positives = 295/517 (57%), Gaps = 47/517 (9%)
Frame = -3
Query: 1732 LAVDVDSKNYDS---NGVRMSKQVLVSSGNLPCRSGYAVGVLVGNKLYLNPVNGAVQLRP 1562
L++DVDSKNYD N RM KQ L +S P +GY VGVL+GNKL+LNP++ VQLRP
Sbjct: 157 LSIDVDSKNYDPDAPNAQRMKKQTLSTSWKPPQTTGYVVGVLMGNKLHLNPIHAVVQLRP 216
Query: 1561 SL--------KRLXXXXXXXKAVRKLKSENVED-LG--EKDDWIRLKYSCARSDASSRYL 1415
S+ KR + KL+ N E+ +G +K W+ LKY + SD S+RYL
Sbjct: 217 SMEYLSSGGAKRKNNVTGDTNSAVKLEVSNEEESVGSLKKQSWVPLKYHSSESDFSARYL 276
Query: 1414 NKMMMEERDEIRFLMSTGEYVESFCP----RMPNKQLGPLRSELLKLPLEDRFKTWICEA 1247
KM+ E+ I+FLMS EYV S CP N+ G R LL +PLE+RFKT +CE
Sbjct: 277 QKMVAEDNSPIQFLMSPYEYVNSLCPPGVSNDDNRSKGLSRRFLLSMPLEERFKTLLCEG 336
Query: 1246 GPVHRYNALKYLATSESDEDXXXXXXXXXXXVQGLWVAKSSLLKL--EGVEALVRDYALY 1073
PVHR++ALK+ A S ED VQGLWV KSSLL +GV L RDY L
Sbjct: 337 PPVHRFSALKHFAPDNSVEDVLGVLTKHAHLVQGLWVPKSSLLFPGGQGVAPLARDYILL 396
Query: 1072 LFSKNHKISFSDIPKKMKLKSAMEDVLKVFAVRRPDLKDWKFKEPKDVTFVRKHPDIVDE 893
LFSK I++S + L A++ L + AV RP +DWKFKEP DV+F++ HPDIV E
Sbjct: 397 LFSKGPLINYSQVDVPGSLNKALKGFLSILAVERPSFRDWKFKEPTDVSFMKLHPDIVRE 456
Query: 892 QDQAWEARGEKLYIQIYG----------KDPPKVDINTTRIVPKANANRSVQETSIQPMP 743
Q + WE+ +++ I+G P + T A R+ T ++
Sbjct: 457 QRRVWESLEKQITDIIHGGGRRGPVTKNSGKPSIANKTGTSTKSDGATRATNGTPVR--- 513
Query: 742 VKTVISDKTREVLLKAIEKVLHTHKVCHFQRLGQLLRD------TSLEAPP--------- 608
+T +S +TRE L KA+E+V HKVC FQ + Q LRD TS + P
Sbjct: 514 -RTAMSAETREALPKALEEVFRLHKVCSFQLICQALRDLAVSKSTSPKVDPRTFVAAAYG 572
Query: 607 --PPERELKEILKEVAIDIHGVFVSKTSPDHSYDGLRRTVIDLLIVEGPNAKLRKAAIIE 434
P+ EL I+ + A +HGV+V KTS ++ LR+ V+DL + PNAKL++A I+E
Sbjct: 573 ADAPQEELHAIISKYATTVHGVYVWKTSEHSEHNPLRKVVVDLFCGKEPNAKLKRADIME 632
Query: 433 AGKIRLKRPDIPTIEYNKVMQELCVSRGSVWTLKTGD 323
A KI LK+ +I T EYNKV+ ELC SRGS+W LK+GD
Sbjct: 633 AAKIALKK-EITTHEYNKVVSELCESRGSLWVLKSGD 668
>emb|CBI17549.3| unnamed protein product [Vitis vinifera]
Length = 688
Score = 352 bits (904), Expect = 1e-94
Identities = 222/533 (41%), Positives = 295/533 (55%), Gaps = 63/533 (11%)
Frame = -3
Query: 1732 LAVDVDSKNYDS---NGVRMSKQVLVSSGNLPCRSGYAVGVLVGNKLYLNPVNGAVQLRP 1562
L++DVDSKNYD N RM KQ L +S P +GY VGVL+GNKL+LNP++ VQLRP
Sbjct: 157 LSIDVDSKNYDPDAPNAQRMKKQTLSTSWKPPQTTGYVVGVLMGNKLHLNPIHAVVQLRP 216
Query: 1561 SL--------KRLXXXXXXXKAVRKLKSENVED--------------LGEK-----DDWI 1463
S+ KR + KL+ N E+ L E+ + W+
Sbjct: 217 SMEYLSSGGAKRKNNVTGDTNSAVKLEVSNEEESVGSLKKQNKIMGILDEQNTDAAESWV 276
Query: 1462 RLKYSCARSDASSRYLNKMMMEERDEIRFLMSTGEYVESFCP----RMPNKQLGPLRSEL 1295
LKY + SD S+RYL KM+ E+ I+FLMS EYV S CP N+ G R L
Sbjct: 277 PLKYHSSESDFSARYLQKMVAEDNSPIQFLMSPYEYVNSLCPPGVSNDDNRSKGLSRRFL 336
Query: 1294 LKLPLEDRFKTWICEAGPVHRYNALKYLATSESDEDXXXXXXXXXXXVQGLWVAKSSLLK 1115
L +PLE+RFKT +CE PVHR++ALK+ A S ED VQGLWV KSSLL
Sbjct: 337 LSMPLEERFKTLLCEGPPVHRFSALKHFAPDNSVEDVLGVLTKHAHLVQGLWVPKSSLLF 396
Query: 1114 L--EGVEALVRDYALYLFSKNHKISFSDIPKKMKLKSAMEDVLKVFAVRRPDLKDWKFKE 941
+GV L RDY L LFSK I++S + L A++ L + AV RP +DWKFKE
Sbjct: 397 PGGQGVAPLARDYILLLFSKGPLINYSQVDVPGSLNKALKGFLSILAVERPSFRDWKFKE 456
Query: 940 PKDVTFVRKHPDIVDEQDQAWEARGEKLYIQIYG----------KDPPKVDINTTRIVPK 791
P DV+F++ HPDIV EQ + WE+ +++ I+G P + T
Sbjct: 457 PTDVSFMKLHPDIVREQRRVWESLEKQITDIIHGGGRRGPVTKNSGKPSIANKTGTSTKS 516
Query: 790 ANANRSVQETSIQPMPVKTVISDKTREVLLKAIEKVLHTHKVCHFQRLGQLLRD------ 629
A R+ T ++ +T +S +TRE L KA+E+V HKVC FQ + Q LRD
Sbjct: 517 DGATRATNGTPVR----RTAMSAETREALPKALEEVFRLHKVCSFQLICQALRDLAVSKS 572
Query: 628 TSLEAPP-----------PPERELKEILKEVAIDIHGVFVSKTSPDHSYDGLRRTVIDLL 482
TS + P P+ EL I+ + A +HGV+V KTS ++ LR+ V+DL
Sbjct: 573 TSPKVDPRTFVAAAYGADAPQEELHAIISKYATTVHGVYVWKTSEHSEHNPLRKVVVDLF 632
Query: 481 IVEGPNAKLRKAAIIEAGKIRLKRPDIPTIEYNKVMQELCVSRGSVWTLKTGD 323
+ PNAKL++A I+EA KI LK+ +I T EYNKV+ ELC SRGS+W LK+GD
Sbjct: 633 CGKEPNAKLKRADIMEAAKIALKK-EITTHEYNKVVSELCESRGSLWVLKSGD 684
>ref|XP_002525112.1| DNA-directed RNA polymerase, putative [Ricinus communis]
gi|223535571|gb|EEF37239.1| DNA-directed RNA polymerase,
putative [Ricinus communis]
Length = 677
Score = 310 bits (794), Expect = 8e-82
Identities = 203/496 (40%), Positives = 274/496 (55%), Gaps = 44/496 (8%)
Frame = -3
Query: 1732 LAVDVDSKNYD---SNGVRMSKQVLVSSGNLPCRSGYAVGVLVGNKLYLNPVNGAVQLRP 1562
L +D DS N+D ++ KQ L +S P +GYAVGVL+GNKL+LNP++ VQLRP
Sbjct: 171 LTID-DSSNWDPAQASKYNFKKQTLSTSFMPPRVTGYAVGVLIGNKLHLNPIHAVVQLRP 229
Query: 1561 SLKRLXXXXXXXKAVRKLKSE-NVEDLGE--------KDDWIRLKYSCARSDASSRYLNK 1409
SL+ + K L E +ED E K WI LKY ++SD SSRYL K
Sbjct: 230 SLEHVNSNDSKRKNSATLNPEVKLEDSNEGKPIGSSKKQCWISLKYHGSKSDFSSRYLEK 289
Query: 1408 MMMEERDEIRFLMSTGEYVESFCPRMPN---KQLGPLRSELLKLPLEDRFKTWICEAGPV 1238
M+ +E + F M+ +Y+ S CP N K GP R LL LPL +R K I E PV
Sbjct: 290 MIAQESSPMEFTMTPYDYMSSLCPVASNEKTKSKGPPRRFLLSLPLAERLKKLILEGPPV 349
Query: 1237 HRYNALKYLATSESDEDXXXXXXXXXXXVQGLWVAKSSLLKLEGVEAL-VRDYALYLFSK 1061
R++ LK+ A +S ED VQGLW KSSLL + +RDY L LFSK
Sbjct: 350 QRFSVLKHFAPDDSVEDVLKVLQEYGQLVQGLWAPKSSLLFPDANSKQGIRDYVLLLFSK 409
Query: 1060 NHKISFSDIPKKMKLKSAMEDVLKVFAVRRPDLKDWKFKEPKDVTFVRKHPDIVDEQDQA 881
N I+ S + +K+K ++ L +FAV RP KDWKFKE D TF++ +PDIV +Q++A
Sbjct: 410 NLVINSSQVNFPVKIKEEIKSFLNLFAVERPSFKDWKFKEHTDTTFIKLYPDIVKKQEEA 469
Query: 880 WEARGEKLYIQIYGKDPPKVDINTTRIVPKANANRSVQETSIQPMP---------VKTVI 728
W+ EK +++ + K + P N S + MP KT I
Sbjct: 470 WD-NTEKRLSKVFDRS-GKASMKNAIPKPPMVHNTVKHLDSEKSMPKIASGMRRLTKTTI 527
Query: 727 SDKTREVLLKAIEKVLHTHKVCHFQRLGQLLRDTSLE------------------APPPP 602
+ +TRE LLKA+ KV +HKVC FQ + Q LRD ++ A PP
Sbjct: 528 TVETREALLKALPKVFQSHKVCSFQLICQGLRDLAVSQSTLPKADPRIAVAAASGADAPP 587
Query: 601 ERELKEILKEVAIDIHGVFVSKTSPDH-SYDGLRRTVIDLLIVEGPNAKLRKAAIIEAGK 425
E EL+EI+ +VA +IHG +V K+SP+H YD LR+ +IDLL+ GPNAKL+KA + EA +
Sbjct: 588 E-ELQEIISQVATNIHGFYVLKSSPEHPQYDELRKVIIDLLLARGPNAKLKKAEVFEAAR 646
Query: 424 IRLKRPDIPTIEYNKV 377
+ KR D+ IEYNK+
Sbjct: 647 LAFKR-DVTNIEYNKL 661
>ref|XP_002310208.1| predicted protein [Populus trichocarpa] gi|222853111|gb|EEE90658.1|
predicted protein [Populus trichocarpa]
Length = 667
Score = 306 bits (785), Expect = 9e-81
Identities = 205/523 (39%), Positives = 283/523 (54%), Gaps = 53/523 (10%)
Frame = -3
Query: 1732 LAVDVDSKNYD---SNGVRMSKQVLVSSGNLPCRSGYAVGVLVGNKLYLNPVNGAVQLRP 1562
L++D D+KNYD ++ + M KQ L SS + P +GYAVGVL+GNKL+LNP++ VQLRP
Sbjct: 165 LSID-DTKNYDPDIASRLNMKKQTLSSSWSPPPATGYAVGVLIGNKLHLNPIHAVVQLRP 223
Query: 1561 SLKRLXXXXXXXKA--------------------VRKLKSENVEDLGEKDDWIRLKYSCA 1442
S+ L K +++ S N + ++ WI LKY +
Sbjct: 224 SMDYLSSGNSKGKKNATSGEDSNEGKPLGLPKKQSKQMSSGNEQKPDVEESWIPLKYHGS 283
Query: 1441 RSDASSRYLNKMMMEERDEIRFLMSTGEYVESFCPRMPNKQL---GPLRSELLKLPLEDR 1271
+SD SSRYL M+ E I F M+ +Y+ S CP + N + GP R LL LPLE+R
Sbjct: 284 KSDLSSRYLQNMVAPESSTIEFAMNPYDYMSSLCPGISNNNIKLNGPSRRVLLSLPLEER 343
Query: 1270 FKTWICEAGPVHRYNALKYLATSESDEDXXXXXXXXXXXVQGLWVAKSSLL-----KLEG 1106
K E P+HR+ AL++L ++S ED VQGLWV K+SLL E
Sbjct: 344 IKRLFLEGPPIHRFAALRHLIPNDSIEDLLIVLQEYGQLVQGLWVPKTSLLFPNPKPTEK 403
Query: 1105 VEALVRDYALYLFSKNHKISFSDIPKKMKLKSAMEDVLKVFAVRRPDLKDWKFKEPKDVT 926
V+ RDY L LFSK+ ++ S++ MK ++ L +FAV RP KDWKFKE D
Sbjct: 404 VKLAARDYILLLFSKSLVVTPSELNVPMK-PLILKSFLNIFAVERPSFKDWKFKENVDTL 462
Query: 925 FVRKHPDIVDEQDQAWEARGEKLYIQIYGKDPPKVDINTTRIVPKANANRSVQETSIQPM 746
FV +PDIV +Q+QAWE G+ + A +SV + I
Sbjct: 463 FVELYPDIVRKQEQAWEVMGKNISAAF------------------DRAGKSVSKNVI-TK 503
Query: 745 PVKTVISDKTREVLLKAIEKVLHTHKVCH--FQRLGQLLRDTSLE--------------- 617
P KT ++D+TRE L KA+ KVL THKVC FQ + Q LR ++
Sbjct: 504 PKKT-MTDETREALRKALPKVLQTHKVCRYGFQMICQGLRQLAISQSTLPKADPRIAVAA 562
Query: 616 ---APPPPERELKEILKEVAIDIHGVFVSKTSPDH-SYDGL-RRTVIDLLIVEGPNAKLR 452
A PPE EL+E++ EVA +IHG +V K+SP+H +D L R+ VI L + GPNA ++
Sbjct: 563 ASGAEAPPE-ELQEVISEVATNIHGFYVLKSSPEHPDFDPLSRKVVIGLFLARGPNANIK 621
Query: 451 KAAIIEAGKIRLKRPDIPTIEYNKVMQELCVSRGSVWTLKTGD 323
K+ + A ++ LKR + EY KVM +LC S+GS W LK+GD
Sbjct: 622 KSEVQAAARLELKR-EPSNSEYIKVMTDLCESKGSAWVLKSGD 663
>gb|AEI98616.1| hypothetical protein 111O18.3 [Coffea canephora]
Length = 643
Score = 297 bits (760), Expect = 7e-78
Identities = 203/532 (38%), Positives = 278/532 (52%), Gaps = 60/532 (11%)
Frame = -3
Query: 1732 LAVDVDSKNYDSNG---VRMSKQVLVSSGNLPCRSGYAVGVLVGNKLYLNPVNGAVQLRP 1562
LAVDVDSKNYDS+ V M+KQ L SS P +GYAVGVLVGNKL+LNP++ VQLRP
Sbjct: 161 LAVDVDSKNYDSDADPRVSMTKQTLTSSWKPPVTAGYAVGVLVGNKLHLNPIHAVVQLRP 220
Query: 1561 SLKRLXXXXXXXKAVRKLKSENVED--LGE------------------------KDDWIR 1460
S++ R S N+ED GE ++DWI
Sbjct: 221 SMQHYKPESSKR---RTTASSNLEDNTKGEEVTTGSLKKQGKPSGPVIEQNKDTREDWIP 277
Query: 1459 LKYSCARSDASSRYLNKMMMEERDEIRFLMSTGEYVESFCPRMPNK---QLGPLRSELLK 1289
L Y ARSD S Y+ KM+ + I+F M+ +YV + CP N+ GP R LL
Sbjct: 278 LNYHGARSDISMSYVRKMVEHDSSHIQFSMN-HDYVNTLCPGTSNENNGSNGPSR-VLLS 335
Query: 1288 LPLEDRFKTWICEAGPVHRYNALKYLATSESDEDXXXXXXXXXXXVQGLWVAKSSLL--K 1115
LPLE+RF+TW+ + P+HR++ALK+LA S ED VQGLW+ KSSLL K
Sbjct: 336 LPLEERFRTWLLQGPPIHRFDALKHLAPDASVEDILAVLSQHAQLVQGLWIPKSSLLYGK 395
Query: 1114 LEGVEALVRDYALYLFSKNHKISFSDIPKKMKLKSAMEDVLKVFAVRRPDLKDWKFKEPK 935
+G++AL RDY L LFS+ I+ S +P++ KL AM DVL A R L DWKFKEP
Sbjct: 396 DQGIDALARDYVLLLFSRTPIINNSQLPQQQKLNRAMRDVLDTVAFERVSLNDWKFKEPP 455
Query: 934 DVTFVRKHPDIVDEQDQAWEARGEKLYIQIYGKDPPKVDINTTRIVPKANANRSVQ---- 767
D+TF++ +P IV EQ+Q WE + + +I+G N++R + N S
Sbjct: 456 DMTFIKLNPKIVREQEQTWERLEKLITEKIFGDKNRPATKNSSRPLTTNNPATSKSLSKH 515
Query: 766 -ETSIQPMPVKTVISDKTREVLLKAIEKVLHTHKVCHFQRLGQLLRDTS----------- 623
S+ + +S++TRE L KA++K+ +HKVC FQ++ Q LR+ +
Sbjct: 516 ASNSLNAGVPRRPMSEETREALPKALQKLFQSHKVC-FQQICQRLREMAVSESSRPKGFA 574
Query: 622 ---------LEAPPPPERELKEILKEVAIDIHGVFVSKTSPDHSYDGLRRTVIDLLIVEG 470
+EAPP EL+ I+ +VAI+IHGV+V K+SP H
Sbjct: 575 REAIAAAHGVEAPP---EELQAIISQVAINIHGVYVLKSSPVHP---------------- 615
Query: 469 PNAKLRKAAIIEAGKIRLKRPDIPTIEYNK-VMQELCVSRGSVWTLKTGDAD 317
E+++ V+QELCVS+GS W LK+GD +
Sbjct: 616 --------------------------EHDEFVVQELCVSQGSAWVLKSGDGN 641