BLASTX nr result

ID: Cnidium21_contig00023440 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00023440
         (671 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002325490.1| predicted protein [Populus trichocarpa] gi|2...   297   1e-78
ref|XP_003606390.1| DEAD-box ATP-dependent RNA helicase [Medicag...   296   2e-78
ref|XP_003533799.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP...   291   6e-77
ref|XP_002277600.1| PREDICTED: DEAD-box ATP-dependent RNA helica...   291   6e-77
ref|XP_002526935.1| dead box ATP-dependent RNA helicase, putativ...   290   2e-76

>ref|XP_002325490.1| predicted protein [Populus trichocarpa] gi|222862365|gb|EEE99871.1|
           predicted protein [Populus trichocarpa]
          Length = 594

 Score =  297 bits (760), Expect = 1e-78
 Identities = 143/203 (70%), Positives = 173/203 (85%)
 Frame = +1

Query: 58  KEKNPIEVAQDDKVFASCTFETLGLHPRLCQILEEKLEFKVPTHIQAQAVPVILSGKHAL 237
           K+K   +  Q  ++FASC+F  LGLHP LC  L+E+L F+ PT +QAQA+PVILSG+H L
Sbjct: 4   KKKKEDKDNQKSEIFASCSFSALGLHPSLCNQLQERLGFEGPTLVQAQAIPVILSGRHVL 63

Query: 238 VNAATGTGKTLVYLATVVHHLLLQNDKQRINRSDGTYALVLVPTHELCMQVYETLDKMLH 417
           VNAATGTGKT+ YLA ++HHL   +   RI+R +GT+ALVLVPT ELC+QVYE L K+LH
Sbjct: 64  VNAATGTGKTVAYLAPIIHHL--HSYPSRIDRENGTFALVLVPTRELCLQVYEILQKLLH 121

Query: 418 RLHWLVPGYIMGGESRAKEKARLRKGISILVSTPGRLLDHLKNTSSFVYTNLRWLIFDEA 597
           R HW+VPGY+MGGE+R+KEKARLRKGISILV+TPGRLLDHLKNT+SFV+TNLRW+IFDEA
Sbjct: 122 RFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKNTASFVHTNLRWIIFDEA 181

Query: 598 DRILELGYGKEIEEILTVLGSRQ 666
           DRILELG+GKEIEEIL +LGSRQ
Sbjct: 182 DRILELGFGKEIEEILDLLGSRQ 204


>ref|XP_003606390.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
           gi|355507445|gb|AES88587.1| DEAD-box ATP-dependent RNA
           helicase [Medicago truncatula]
          Length = 613

 Score =  296 bits (759), Expect = 2e-78
 Identities = 141/191 (73%), Positives = 169/191 (88%)
 Frame = +1

Query: 88  DDKVFASCTFETLGLHPRLCQILEEKLEFKVPTHIQAQAVPVILSGKHALVNAATGTGKT 267
           ++ VFASC+F +LGLH  LC  L E++ F+ PT IQAQA+PV+LSG+HALVNAATGTGKT
Sbjct: 36  NNNVFASCSFSSLGLHQTLCDQLRERMGFEAPTLIQAQAIPVVLSGRHALVNAATGTGKT 95

Query: 268 LVYLATVVHHLLLQNDKQRINRSDGTYALVLVPTHELCMQVYETLDKMLHRLHWLVPGYI 447
           + YLA ++HHL  Q+  +R+ RSDGT+ALVLVPT ELC+QV+E L K+LHR HW+VPGYI
Sbjct: 96  IAYLAPIIHHL--QSYDKRVQRSDGTFALVLVPTRELCLQVHEILQKLLHRFHWIVPGYI 153

Query: 448 MGGESRAKEKARLRKGISILVSTPGRLLDHLKNTSSFVYTNLRWLIFDEADRILELGYGK 627
           MGGESR+KEKARLRKGISIL++TPGRLLDHLKNTSSFVYTNLRW+IFDEADRILELG+GK
Sbjct: 154 MGGESRSKEKARLRKGISILIATPGRLLDHLKNTSSFVYTNLRWIIFDEADRILELGFGK 213

Query: 628 EIEEILTVLGS 660
           EI+EIL +LGS
Sbjct: 214 EIQEILNLLGS 224


>ref|XP_003533799.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
           17-like [Glycine max]
          Length = 596

 Score =  291 bits (746), Expect = 6e-77
 Identities = 142/201 (70%), Positives = 173/201 (86%)
 Frame = +1

Query: 64  KNPIEVAQDDKVFASCTFETLGLHPRLCQILEEKLEFKVPTHIQAQAVPVILSGKHALVN 243
           KN    A +D VFASC+F +LGL   LC+ L ++L F+VPT +QAQA+PVILSG+HALVN
Sbjct: 11  KNKGNGANND-VFASCSFSSLGLDSNLCEQLRDRLGFEVPTLVQAQAIPVILSGRHALVN 69

Query: 244 AATGTGKTLVYLATVVHHLLLQNDKQRINRSDGTYALVLVPTHELCMQVYETLDKMLHRL 423
           AATGTGKT+ YLA ++HHL  Q  + RI RSDGT+ALVLVPT ELC+QVYE L K+LHR 
Sbjct: 70  AATGTGKTVAYLAPIIHHL--QGYENRIQRSDGTFALVLVPTRELCLQVYEILQKLLHRF 127

Query: 424 HWLVPGYIMGGESRAKEKARLRKGISILVSTPGRLLDHLKNTSSFVYTNLRWLIFDEADR 603
           HW+VPGYIMGGE R+KEK+RLRKGISIL++TPGRLLDHLKNT++F+Y+NLRW+IFDEADR
Sbjct: 128 HWIVPGYIMGGEKRSKEKSRLRKGISILIATPGRLLDHLKNTTAFLYSNLRWIIFDEADR 187

Query: 604 ILELGYGKEIEEILTVLGSRQ 666
           ILELG+GK+IEEIL +LGSR+
Sbjct: 188 ILELGFGKDIEEILDLLGSRK 208


>ref|XP_002277600.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 17-like [Vitis
           vinifera]
          Length = 600

 Score =  291 bits (746), Expect = 6e-77
 Identities = 141/204 (69%), Positives = 171/204 (83%)
 Frame = +1

Query: 52  EIKEKNPIEVAQDDKVFASCTFETLGLHPRLCQILEEKLEFKVPTHIQAQAVPVILSGKH 231
           E+K+        + ++FASC+F +LGLHP LC  L E++ F+VPT +QA+A+PVIL+G+H
Sbjct: 11  EMKKTKQNSYNGESEIFASCSFSSLGLHPTLCDQLRERMGFEVPTIVQAEAIPVILAGRH 70

Query: 232 ALVNAATGTGKTLVYLATVVHHLLLQNDKQRINRSDGTYALVLVPTHELCMQVYETLDKM 411
            LVNAATGTGKT+ YLA V++HL       RI RS GT+ALVLVPT ELCMQVYE L K+
Sbjct: 71  VLVNAATGTGKTIAYLAPVINHL--HKYDPRIERSAGTFALVLVPTRELCMQVYEILQKL 128

Query: 412 LHRLHWLVPGYIMGGESRAKEKARLRKGISILVSTPGRLLDHLKNTSSFVYTNLRWLIFD 591
           LHR HW+VPGY+MGGE+R+KEKARLRKGISILV+TPGRLLDHLKNTSSF++TNLRW+IFD
Sbjct: 129 LHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKNTSSFLHTNLRWIIFD 188

Query: 592 EADRILELGYGKEIEEILTVLGSR 663
           EADRILELG+GKEIEEIL +LGSR
Sbjct: 189 EADRILELGFGKEIEEILDLLGSR 212


>ref|XP_002526935.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
           gi|223533687|gb|EEF35422.1| dead box ATP-dependent RNA
           helicase, putative [Ricinus communis]
          Length = 603

 Score =  290 bits (742), Expect = 2e-76
 Identities = 143/213 (67%), Positives = 174/213 (81%), Gaps = 5/213 (2%)
 Frame = +1

Query: 40  SKNTEIKEKNPIEVAQDDK-----VFASCTFETLGLHPRLCQILEEKLEFKVPTHIQAQA 204
           +K  ++K +   E A++ K     +FASC+F  LGLHP LC  L E++ F+ PT +QAQA
Sbjct: 3   TKKKKMKREREEEEAKETKNNNPEMFASCSFLNLGLHPTLCDQLRERMGFEAPTTVQAQA 62

Query: 205 VPVILSGKHALVNAATGTGKTLVYLATVVHHLLLQNDKQRINRSDGTYALVLVPTHELCM 384
           +PV+LSG+H LVNAATGTGKT+ YLA ++HHL  Q+   RI R+ GT+ALVLVPT ELC+
Sbjct: 63  IPVVLSGRHVLVNAATGTGKTVAYLAPIIHHL--QSYSPRIERAHGTFALVLVPTRELCL 120

Query: 385 QVYETLDKMLHRLHWLVPGYIMGGESRAKEKARLRKGISILVSTPGRLLDHLKNTSSFVY 564
           QVYE L  +LHR HW+VPGYIMGGESR+KEKARLRKGISILV+TPGRLLDHLKNTSSF +
Sbjct: 121 QVYEILQGLLHRFHWIVPGYIMGGESRSKEKARLRKGISILVATPGRLLDHLKNTSSFSH 180

Query: 565 TNLRWLIFDEADRILELGYGKEIEEILTVLGSR 663
           TNLRW+IFDEADRILELG+GKEIE+IL +LGSR
Sbjct: 181 TNLRWIIFDEADRILELGFGKEIEDILDLLGSR 213


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