BLASTX nr result

ID: Cnidium21_contig00023245 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00023245
         (478 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002326795.1| condensin complex components subunit [Populu...   249   2e-64
ref|XP_002510963.1| Structural maintenance of chromosome, putati...   244   4e-63
ref|XP_002304405.1| condensin complex components subunit [Populu...   243   1e-62
ref|XP_003542846.1| PREDICTED: structural maintenance of chromos...   240   1e-61
ref|XP_002864790.1| hypothetical protein ARALYDRAFT_496418 [Arab...   239   2e-61

>ref|XP_002326795.1| condensin complex components subunit [Populus trichocarpa]
           gi|222834117|gb|EEE72594.1| condensin complex components
           subunit [Populus trichocarpa]
          Length = 1176

 Score =  249 bits (635), Expect = 2e-64
 Identities = 126/159 (79%), Positives = 142/159 (89%)
 Frame = +2

Query: 2   LEKDRMAEREIVQKLKDEIRMLTSRLGNVDFQYRDPARNFDRSKVKGVVAKLIKVKDSSA 181
           L+KDR +E E+VQKLKDEIR L+++L N+ F YRDP RNFDRSKVKGVVAKLIKVKD S 
Sbjct: 476 LQKDRASELELVQKLKDEIRDLSAQLSNLQFTYRDPVRNFDRSKVKGVVAKLIKVKDRST 535

Query: 182 MTALEVAAGGKLFNVVVDTENTGKQLLQNGELRRRVTIIPLNKINGYTVPPRVQNAAVRL 361
           MTALEV AGGKL+NVVVDTE+TGKQLLQNG+LRRRVTI+PLNKI  +TV PR+Q AAVRL
Sbjct: 536 MTALEVTAGGKLYNVVVDTESTGKQLLQNGDLRRRVTIVPLNKIQSHTVHPRIQQAAVRL 595

Query: 362 VGKENAEIALLLVEYDKELKSAMEYVFGSTFICKTTDAA 478
           VGKENAE+AL LV YD+ELK+AMEYVFGSTFICKT DAA
Sbjct: 596 VGKENAELALSLVGYDEELKTAMEYVFGSTFICKTMDAA 634


>ref|XP_002510963.1| Structural maintenance of chromosome, putative [Ricinus communis]
           gi|223550078|gb|EEF51565.1| Structural maintenance of
           chromosome, putative [Ricinus communis]
          Length = 1176

 Score =  244 bits (624), Expect = 4e-63
 Identities = 124/159 (77%), Positives = 139/159 (87%)
 Frame = +2

Query: 2   LEKDRMAEREIVQKLKDEIRMLTSRLGNVDFQYRDPARNFDRSKVKGVVAKLIKVKDSSA 181
           L+K+R +E E+VQKLKD IR  +++L NV F YRDP +NFDRSKVKGVVAKLIKVKDSS 
Sbjct: 476 LQKERSSEMELVQKLKDNIRDFSAQLSNVQFTYRDPVKNFDRSKVKGVVAKLIKVKDSST 535

Query: 182 MTALEVAAGGKLFNVVVDTENTGKQLLQNGELRRRVTIIPLNKINGYTVPPRVQNAAVRL 361
            TALEV AGGKLFNVVVDTENTGKQLLQNG+LRRRVTIIPLNKI  +TVPPRVQ AA RL
Sbjct: 536 ATALEVTAGGKLFNVVVDTENTGKQLLQNGDLRRRVTIIPLNKIQPHTVPPRVQQAATRL 595

Query: 362 VGKENAEIALLLVEYDKELKSAMEYVFGSTFICKTTDAA 478
           VGK NAE+AL LV YD++L+SAMEYVFGSTF+CKT DAA
Sbjct: 596 VGKGNAELALSLVGYDEDLRSAMEYVFGSTFVCKTIDAA 634


>ref|XP_002304405.1| condensin complex components subunit [Populus trichocarpa]
           gi|222841837|gb|EEE79384.1| condensin complex components
           subunit [Populus trichocarpa]
          Length = 1176

 Score =  243 bits (620), Expect = 1e-62
 Identities = 125/159 (78%), Positives = 140/159 (88%)
 Frame = +2

Query: 2   LEKDRMAEREIVQKLKDEIRMLTSRLGNVDFQYRDPARNFDRSKVKGVVAKLIKVKDSSA 181
           L+KD  +E +++QKLKDEIR L+++L NV F YRDP RNFDRSKVKGVVAKLIKV DSS 
Sbjct: 476 LQKDCASELKLLQKLKDEIRDLSAQLSNVQFIYRDPVRNFDRSKVKGVVAKLIKVNDSST 535

Query: 182 MTALEVAAGGKLFNVVVDTENTGKQLLQNGELRRRVTIIPLNKINGYTVPPRVQNAAVRL 361
           MTALEV AGGKLFNVVVDTE+TGKQLLQNG+LRRRVTIIPLNKI  +TVP RVQ AAVRL
Sbjct: 536 MTALEVTAGGKLFNVVVDTESTGKQLLQNGDLRRRVTIIPLNKIQSHTVPIRVQQAAVRL 595

Query: 362 VGKENAEIALLLVEYDKELKSAMEYVFGSTFICKTTDAA 478
           VGKENAE+AL LV YD+ELK+AMEYVFGSTF+CK  DAA
Sbjct: 596 VGKENAELALTLVGYDEELKTAMEYVFGSTFVCKNIDAA 634


>ref|XP_003542846.1| PREDICTED: structural maintenance of chromosomes protein 2-1-like
           [Glycine max]
          Length = 1176

 Score =  240 bits (612), Expect = 1e-61
 Identities = 123/159 (77%), Positives = 137/159 (86%)
 Frame = +2

Query: 2   LEKDRMAEREIVQKLKDEIRMLTSRLGNVDFQYRDPARNFDRSKVKGVVAKLIKVKDSSA 181
           L+K+RM E + +QKLKDEIR L++ L NV+F YRDP++NFDRSKVKGVVAKLIKVKD S 
Sbjct: 476 LQKERMTEMDCMQKLKDEIRNLSANLANVEFTYRDPSKNFDRSKVKGVVAKLIKVKDRST 535

Query: 182 MTALEVAAGGKLFNVVVDTENTGKQLLQNGELRRRVTIIPLNKINGYTVPPRVQNAAVRL 361
           MTALEV A GKL+NVVVDTENTGKQLLQNG LRRRVTIIPLNKI  Y V  RVQ AAVRL
Sbjct: 536 MTALEVTAAGKLYNVVVDTENTGKQLLQNGNLRRRVTIIPLNKIQSYNVSSRVQQAAVRL 595

Query: 362 VGKENAEIALLLVEYDKELKSAMEYVFGSTFICKTTDAA 478
           VGK NAEIAL LV Y++EL+SAMEYVFGSTF+CKT DAA
Sbjct: 596 VGKGNAEIALSLVGYEEELQSAMEYVFGSTFVCKTIDAA 634


>ref|XP_002864790.1| hypothetical protein ARALYDRAFT_496418 [Arabidopsis lyrata subsp.
           lyrata] gi|297310625|gb|EFH41049.1| hypothetical protein
           ARALYDRAFT_496418 [Arabidopsis lyrata subsp. lyrata]
          Length = 1175

 Score =  239 bits (609), Expect = 2e-61
 Identities = 121/159 (76%), Positives = 137/159 (86%)
 Frame = +2

Query: 2   LEKDRMAEREIVQKLKDEIRMLTSRLGNVDFQYRDPARNFDRSKVKGVVAKLIKVKDSSA 181
           LEKDR AE E+VQ+L+D++R L+++L NV F YRDP RNFDRSKVKGVVAKLIKVKD S+
Sbjct: 476 LEKDRGAELEVVQRLEDKVRGLSAQLANVQFTYRDPVRNFDRSKVKGVVAKLIKVKDRSS 535

Query: 182 MTALEVAAGGKLFNVVVDTENTGKQLLQNGELRRRVTIIPLNKINGYTVPPRVQNAAVRL 361
           MTALEV AGGKL+NVVVD+E+TGKQLLQNG LRRRVTIIPLNKI  Y V PRVQ    RL
Sbjct: 536 MTALEVTAGGKLYNVVVDSEDTGKQLLQNGALRRRVTIIPLNKIQSYVVQPRVQQVTARL 595

Query: 362 VGKENAEIALLLVEYDKELKSAMEYVFGSTFICKTTDAA 478
           VGKENAE+AL LV Y  ELK+A+EYVFGSTF+CKTTDAA
Sbjct: 596 VGKENAELALSLVGYSDELKNAIEYVFGSTFVCKTTDAA 634


Top