BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00023181
         (349 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC69378.1| putative retroelement pol polyprotein [Arabidopsi...    62   6e-08
gb|ABA97970.1| retrotransposon protein, putative, unclassified, ...    61   8e-08
gb|ABN06064.1| RNA-directed DNA polymerase (Reverse transcriptas...    58   7e-07
gb|AAL79762.1|AC096687_26 putative polyprotein [Oryza sativa Jap...    55   5e-06
gb|AAK82434.1|AC091247_1 putative polyprotein, 5'-partial [Oryza...    55   5e-06

>gb|AAC69378.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 945

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 29/99 (29%), Positives = 51/99 (51%)
 Frame = -1

Query: 349 SSLNLISAQLCKEMQLEVQQQPPVTLSLANGTSIISYAKCPGLKIKQGNTEMEVSAWIVD 170
           S+ N I  +  + M L+     P T+ + NG  ++  ++   + +  G     V+ + + 
Sbjct: 337 STHNFIGEKAVRGMNLKATTTKPFTVRVVNGMPLVCRSRYEAIPVVMGGVVFPVTLYALP 396

Query: 169 LKDWHVILGVDWLTQLGEFKCNYQNKTLQFNWQGTEVTL 53
           L    + +GV WL+ LG   CN++ +TLQF+W G EV L
Sbjct: 397 LMGLDLAMGVQWLSTLGPTLCNWKEQTLQFHWAGDEVRL 435


>gb|ABA97970.1| retrotransposon protein, putative, unclassified, expressed [Oryza
           sativa Japonica Group]
          Length = 1548

 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 30/99 (30%), Positives = 52/99 (52%)
 Frame = -1

Query: 349 SSLNLISAQLCKEMQLEVQQQPPVTLSLANGTSIISYAKCPGLKIKQGNTEMEVSAWIVD 170
           S+ + I A LC  +QL  +   P ++ +ANG ++   AK P         E      ++ 
Sbjct: 438 STHSFIDAGLCHRLQLSTESIQPTSVRVANGETLCCEAKVPQFAWWVQGHEFSFPMRVLP 497

Query: 169 LKDWHVILGVDWLTQLGEFKCNYQNKTLQFNWQGTEVTL 53
           +  + ++LG+DWLTQ     C++  K LQF++ G+ +TL
Sbjct: 498 MGGYDLVLGMDWLTQFSPMTCDWAAKQLQFSYNGSVITL 536


>gb|ABN06064.1| RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc
           finger, CCHC-type; Peptidase aspartic, active site;
           Polynucleotidyl transferase, Ribonuclease H fold
           [Medicago truncatula]
          Length = 1297

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 27/87 (31%), Positives = 48/87 (55%)
 Frame = -1

Query: 340 NLISAQLCKEMQLEVQQQPPVTLSLANGTSIISYAKCPGLKIKQGNTEMEVSAWIVDLKD 161
           N IS QL  +M   V   P +++ L +G+   +   C GL++  G+  +E+ A + DL  
Sbjct: 201 NFISQQLVHKMNWAVVDTPCMSIKLGDGSYSKTKGTCEGLEVDVGDVHLEIDAQLFDLGG 260

Query: 160 WHVILGVDWLTQLGEFKCNYQNKTLQF 80
             ++LG++WL  LG+   N+  +T+ F
Sbjct: 261 VDMVLGIEWLRTLGDMIVNWNKQTMSF 287


>gb|AAL79762.1|AC096687_26 putative polyprotein [Oryza sativa Japonica Group]
           gi|108711868|gb|ABF99663.1| retrotransposon protein,
           putative, unclassified [Oryza sativa Japonica Group]
          Length = 1087

 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 28/99 (28%), Positives = 52/99 (52%)
 Frame = -1

Query: 349 SSLNLISAQLCKEMQLEVQQQPPVTLSLANGTSIISYAKCPGLKIKQGNTEMEVSAWIVD 170
           SS + I++ LC  + L  +  PP ++ +ANG  ++  AK           +      ++ 
Sbjct: 432 SSHSFINSALCHRLHLLSEPIPPTSVRVANGEVLVCDAKISQFDWWVQGHQFSFPVRVLP 491

Query: 169 LKDWHVILGVDWLTQLGEFKCNYQNKTLQFNWQGTEVTL 53
           +  + ++LG+DWLTQ     C++  K LQF++QG+ + L
Sbjct: 492 MGGYDLVLGMDWLTQYSPMTCDWAAKWLQFSYQGSLIKL 530


>gb|AAK82434.1|AC091247_1 putative polyprotein, 5'-partial [Oryza sativa Japonica Group]
          Length = 799

 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 28/99 (28%), Positives = 52/99 (52%)
 Frame = -1

Query: 349 SSLNLISAQLCKEMQLEVQQQPPVTLSLANGTSIISYAKCPGLKIKQGNTEMEVSAWIVD 170
           SS + I++ LC  + L  +  PP ++ +ANG  ++  AK           +      ++ 
Sbjct: 144 SSHSFINSALCHRLHLLSEPIPPTSVRVANGEVLVCDAKISQFDWWVQGHQFSFPVRVLP 203

Query: 169 LKDWHVILGVDWLTQLGEFKCNYQNKTLQFNWQGTEVTL 53
           +  + ++LG+DWLTQ     C++  K LQF++QG+ + L
Sbjct: 204 MGGYDLVLGMDWLTQYSPMTCDWAAKWLQFSYQGSLIKL 242