BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00022936
         (2155 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI36057.3| unnamed protein product [Vitis vinifera]              618   e-174
ref|XP_002515963.1| DNA repair/transcription protein met18/mms19...   532   e-148
ref|XP_004141784.1| PREDICTED: MMS19 nucleotide excision repair ...   524   e-146
ref|XP_003546956.1| PREDICTED: uncharacterized protein LOC100788...   506   e-140
ref|XP_003597674.1| MMS19 nucleotide excision repair protein-lik...   497   e-138

>emb|CBI36057.3| unnamed protein product [Vitis vinifera]
          Length = 1146

 Score =  618 bits (1594), Expect = e-174
 Identities = 326/572 (56%), Positives = 416/572 (72%), Gaps = 10/572 (1%)
 Frame = -3

Query: 2153 FVDKSDDTEKARSFDAIVVDKIASLMLCDDLTMSSQLKLEIISSIGTTGLSYMQKILQGL 1974
            F+D+  ++EKA S++ IVV+KI SLM  DD  +  QL+LE IS IGTTGL+ M KI+QGL
Sbjct: 575  FIDRFHESEKALSYNYIVVEKIVSLMFLDDFGLPFQLRLEAISDIGTTGLNVMLKIVQGL 634

Query: 1973 EXXXXXXXSGVYVNGDPELLGIATSLLECYSCKVLPWFDSIGGHEEVQFHFALNIWDQIE 1794
            E       S VYV+G+ +   IA  LLECYS K+LP     G  E+V   FA+NIW+QIE
Sbjct: 635  EDAIFANLSEVYVHGNLKSAKIAVQLLECYSNKLLPGIHGAGDFEDVLSRFAVNIWNQIE 694

Query: 1793 NNMSFCISSQEQKLLPAAMTAMQYAVGRCLVESQTVIVNRAFSMLSSTTSIPVKDLMNET 1614
            N+M+F + +QE +LL A MTAM+ AVG C   SQ  I+ +A+S+LSS  S  + + M  T
Sbjct: 695  NSMAFSVGAQENELLNATMTAMKLAVGSCSEGSQGKIIKKAYSVLSSCPSFTLMESMPIT 754

Query: 1613 TPAKVEGFKSNDDLDCFSCRDKWIISLFASVVVALRPQAHITNVKVILQLFLTTQLYGHV 1434
               ++EG +   DL+CFSCRDKW+ISLFAS ++A+RPQ HI N++V+L LF+T  L GHV
Sbjct: 755  GTVQLEGLQHTQDLECFSCRDKWVISLFASAIIAVRPQTHIPNIRVVLHLFMTNLLKGHV 814

Query: 1433 PSAQALGSIINKLPVKVENMDASKVFSLEEAMDMIFSSRVWILCNEGPTK-FPVAGNNNE 1257
            P+AQALGS++NKL  K   ++ S   +LE+A+D+IF++ +W   N GP K     G +NE
Sbjct: 815  PAAQALGSMVNKLCPKSNGVEISSTCTLEDALDIIFNTSLWDSHNHGPLKRCSGIGVDNE 874

Query: 1256 IGFRNSLL-------VQSYAIEGLAWIGKGLLMRGHEKVKDIVVTLLSCLLLSNNEQGHL 1098
            +G  N  L       +Q  AIEGLAWIGKGLL+RGHEKVKDI +  L CLL  NN++  +
Sbjct: 875  MGLANLCLSASNCQLLQVCAIEGLAWIGKGLLLRGHEKVKDITMIFLRCLLSKNNQEQDV 934

Query: 1097 --SIMRSAADAFYILISDSEACLNKRLHATIRPLYKQRLFSIVLPVILSLITKADSSIQR 924
              S+ +SAADAF++L+SDSE CLNKR HA IRPLYKQR FS VLP+++S + ++  S  R
Sbjct: 935  LPSVAKSAADAFHVLMSDSEICLNKRFHANIRPLYKQRFFSSVLPILVSSMAESRLSNTR 994

Query: 923  AMLYRAFANVVCGTPLGAILSEAKKLIPILVDSLSVLSEDILHKDIVYSVLLVLSGILTD 744
            +MLYRA A+++  TPL A+LSEAKK+IPIL+DSLS+LS   L KDI+Y++LLVLSGIL D
Sbjct: 995  SMLYRALAHIISDTPLIAVLSEAKKIIPILLDSLSILSTYNLDKDILYNLLLVLSGILMD 1054

Query: 743  KKRSEVVVENTHIIIRRLIALVSYPHMMVIRETAIQCLTAMSELPHARIYPMRTQVLLSI 564
            K   E VVEN H+II  LI LV YPHMMV+RETAIQCL AMS LPHARIYPMRTQVL S+
Sbjct: 1055 KNGQETVVENAHVIINCLIGLVGYPHMMVVRETAIQCLVAMSRLPHARIYPMRTQVLRSV 1114

Query: 563  SKTLDDPKRAVRQEAVKCRQAWASIA*KTLHF 468
             K LDDPKRAVR EAV+CRQAWASIA ++LHF
Sbjct: 1115 QKALDDPKRAVRHEAVRCRQAWASIASRSLHF 1146


>ref|XP_002515963.1| DNA repair/transcription protein met18/mms19, putative [Ricinus
            communis] gi|223544868|gb|EEF46383.1| DNA
            repair/transcription protein met18/mms19, putative
            [Ricinus communis]
          Length = 1174

 Score =  532 bits (1370), Expect = e-148
 Identities = 295/604 (48%), Positives = 401/604 (66%), Gaps = 42/604 (6%)
 Frame = -3

Query: 2153 FVDKSDDTEKARSFDAIVVDKIASLMLCDDLTMSSQLKLEIISSIGTTGLSYMQKILQGL 1974
            FV   ++++K  S+  IVV K+  L    D +M   LKL  ISSIG +G  YM K+  GL
Sbjct: 574  FVHGCNESDKEMSYVDIVVGKMILLASSPDFSMPWSLKLTAISSIGMSGQKYMLKVFLGL 633

Query: 1973 EXXXXXXXSGVYV---------------NGDPELLGIATSLLECYSCKVLPWFDSIGGHE 1839
            E       + +YV                G+ +   I   LLECYS ++LPW     G E
Sbjct: 634  EEAIRANLAEIYVCMIKKKIYVLYSCLVQGNLKSAKILLQLLECYSDELLPWIQKTEGFE 693

Query: 1838 EVQFHFALNIWDQIENNMSFCISSQ-EQKLLPAAMTAMQYAVGRCLVESQTVIVNRAFSM 1662
            EV   F +N+W+QIEN  +F ++   ++ LL A M  M+ AV  C VESQ VI+ +A+ +
Sbjct: 694  EVLMQFVVNLWNQIENFNAFTVAFHGKESLLDAIMKVMKDAVAFCSVESQNVIIYKAYGV 753

Query: 1661 LSSTTSIPVKDLMNETTPAKVEGFKSNDDLDCFSCRDKWIISLFASVVVALRPQAHITNV 1482
            LSS+T +P+K+ ++E +  ++E F++   +D  S RD+WI SLFASV++ALRPQ HI N 
Sbjct: 754  LSSSTFLPLKESLSENS-VQLECFRAIQQMDRLSSRDEWIHSLFASVIIALRPQTHIPNT 812

Query: 1481 KVILQLFLTTQLYGHVPSAQALGSIINKLPVKVENMDASKVFSLEEAMDMIFSSRVWILC 1302
            +++L LF+T  L GHV +A+ALGS++NKL  K  +   S   ++EEAMD+IFS  + +LC
Sbjct: 813  RIVLHLFITALLKGHVTTAEALGSLVNKLDQKSNDACISGDCTIEEAMDIIFS--INLLC 870

Query: 1301 NEG---PTKFPVAGNNNEIGF-------RNSLLVQSYAIEGLAWIGKGLLMRGHEKVKDI 1152
            + G     +F    N +E+          N   ++  AI GLAWIGKGLLMRGHEKVKDI
Sbjct: 871  SFGNGSSGRFDRTRNGDEMDLIKLCLDAPNLAWIKIPAIVGLAWIGKGLLMRGHEKVKDI 930

Query: 1151 VVTLLSCLL--------------LSNNEQGHL--SIMRSAADAFYILISDSEACLNKRLH 1020
             +  L+CLL              L NN +  +  S+M+SA+DAF IL+SDSE CLN++ H
Sbjct: 931  TMVFLNCLLSDGEIGASPLKHGSLENNGEQDMQQSVMKSASDAFQILMSDSELCLNRKYH 990

Query: 1019 ATIRPLYKQRLFSIVLPVILSLITKADSSIQRAMLYRAFANVVCGTPLGAILSEAKKLIP 840
            A +RPLYKQR FS ++P++  LITK+DSS  +++LYRAFA+V+  TPL  I ++AKKL+P
Sbjct: 991  AIVRPLYKQRFFSSIMPILYPLITKSDSSFSKSLLYRAFAHVISDTPLSVISNDAKKLVP 1050

Query: 839  ILVDSLSVLSEDILHKDIVYSVLLVLSGILTDKKRSEVVVENTHIIIRRLIALVSYPHMM 660
            +L+D L++L +D+L KDI+Y +LLVLSGILTD    E V+EN HIII+ LI LV+YPHMM
Sbjct: 1051 VLLDGLTLLGKDVLDKDIMYGLLLVLSGILTDTNGKEAVIENAHIIIKCLIELVAYPHMM 1110

Query: 659  VIRETAIQCLTAMSELPHARIYPMRTQVLLSISKTLDDPKRAVRQEAVKCRQAWASIA*K 480
            +IRETA+QCL AMSELPH RIYP+R QVL +ISK LDDPKRAVRQEAV+CRQAWASIA +
Sbjct: 1111 LIRETAVQCLVAMSELPHTRIYPVRIQVLQAISKALDDPKRAVRQEAVRCRQAWASIASR 1170

Query: 479  TLHF 468
            +LH+
Sbjct: 1171 SLHY 1174


>ref|XP_004141784.1| PREDICTED: MMS19 nucleotide excision repair protein homolog [Cucumis
            sativus]
          Length = 1147

 Score =  524 bits (1349), Expect = e-146
 Identities = 288/587 (49%), Positives = 393/587 (66%), Gaps = 25/587 (4%)
 Frame = -3

Query: 2153 FVDKSDDTEKARSFDAIVVDKIASLMLCDDLTMSSQLKLEIISSIGTTGLSYMQKILQGL 1974
            FVDK   + +++S+  IVV+KIA +    D  +   LKLE+   IG TG SYM KI+ G+
Sbjct: 567  FVDKYPGSVESQSYMHIVVEKIALMFSPHDEVLPLMLKLEMAVDIGRTGRSYMLKIVGGI 626

Query: 1973 EXXXXXXXSGVYVNGDPELLGIATSLLECYSCKVLPWFDSIGGHEEVQFHFALNIWDQIE 1794
            E       S VYV G+ + + I  SLL+CYS K+LPWFD  G  EEV   FALNIWDQIE
Sbjct: 627  EETIFYNLSEVYVYGNSKSVEIVLSLLDCYSTKILPWFDEAGDFEEVILRFALNIWDQIE 686

Query: 1793 NNMSFCISSQE--QKLLPAAMTAMQYAVGRCLVESQTVIVNRAFSMLSSTTSIPVKDLMN 1620
               +F  S  +  Q LL A M A++ +V  C  ESQ +IV +AF++L +++  P+K  ++
Sbjct: 687  KCSTFSTSMDKCIQVLLDATMMALKLSVRSCSKESQNIIVQKAFNVLLTSSFSPLKVTLS 746

Query: 1619 ETTPAKVEGFKSNDDLDCFSCRDKWIISLFASVVVALRPQAHITNVKVILQLFLTTQLYG 1440
             T P ++EG +     D  + RD+WI+SLFASV +ALRPQ H+ +V++I++L + +   G
Sbjct: 747  NTIPVQMEGLQFLQQKDNPTSRDEWILSLFASVTIALRPQVHVPDVRLIIRLLMLSTTRG 806

Query: 1439 HVPSAQALGSIINKLPVKVENMDASKVFSLEEAMDMIFSSRVWILCNEGPTKFPVAGNNN 1260
             VP+AQALGS+INKL VK + ++ S   SLEEA+D+IF +    L NE        G+ +
Sbjct: 807  CVPAAQALGSMINKLSVKSDKVEVSSYVSLEEAIDIIFKTEFRCLHNES------TGDGS 860

Query: 1259 EI-------GFRNSLLVQSYAIEGLAWIGKGLLMRGHEKVKDIVVTLLSCL--------- 1128
            E+           S L+Q +A+ GL+WIGKGLL+ GH+KV+DI +  L  L         
Sbjct: 861  EMFLTDLCSSIEKSSLLQVHAVVGLSWIGKGLLLCGHDKVRDITMVFLQLLVSKSRTDAS 920

Query: 1127 ------LLSNNEQG-HLSIMRSAADAFYILISDSEACLNKRLHATIRPLYKQRLFSIVLP 969
                  L  +NE     ++M+ AA+AF+IL+SDSEACLN++ HA +RPLYKQR FS ++P
Sbjct: 921  PLQQFKLEKDNETSLDFAVMKGAAEAFHILMSDSEACLNRKFHAIVRPLYKQRFFSTMMP 980

Query: 968  VILSLITKADSSIQRAMLYRAFANVVCGTPLGAILSEAKKLIPILVDSLSVLSEDILHKD 789
            +  +L++K+D+S+ R MLY+A+A+V+  TPL AILS+AKK IP+L+D L  LS + ++KD
Sbjct: 981  IFQTLVSKSDTSLSRYMLYQAYAHVISDTPLTAILSDAKKFIPMLLDGLLTLSVNGINKD 1040

Query: 788  IVYSVLLVLSGILTDKKRSEVVVENTHIIIRRLIALVSYPHMMVIRETAIQCLTAMSELP 609
            +VYS+LLVLSGIL DK   E V EN H I+  L  L  + HMM++RETAIQCL A+SELP
Sbjct: 1041 VVYSLLLVLSGILMDKNGQEAVTENAHKIVDCLAGLTDFSHMMLVRETAIQCLVAVSELP 1100

Query: 608  HARIYPMRTQVLLSISKTLDDPKRAVRQEAVKCRQAWASIA*KTLHF 468
            HARIYPMR QVL  ISK LDDPKR+VRQEAV+CRQAWASIA ++LHF
Sbjct: 1101 HARIYPMRRQVLHVISKALDDPKRSVRQEAVRCRQAWASIASRSLHF 1147


>ref|XP_003546956.1| PREDICTED: uncharacterized protein LOC100788537 [Glycine max]
          Length = 1135

 Score =  506 bits (1303), Expect = e-140
 Identities = 282/578 (48%), Positives = 380/578 (65%), Gaps = 23/578 (3%)
 Frame = -3

Query: 2153 FVDKSDDTEKARSFDAIVVDKIASLMLCDDLTMSSQLKLEIISSIGTTGLSYMQKILQGL 1974
            F  K  ++EKA S+  +VV+KI  ++  DD+T+S  LK+E + +IG TG+  M  ILQGL
Sbjct: 569  FFQKFCESEKAMSYRNLVVEKIVEILSLDDITLSFSLKVEALLNIGKTGMKNMLTILQGL 628

Query: 1973 EXXXXXXXSGVYVNGDPELLGIATSLLECYSCKVLPWFDSIGGHEEVQFHFALNIWDQIE 1794
                    S VYV+ +     IA  LLECYSC++LPW    GG E+    FA++IW Q  
Sbjct: 629  GRAVFANLSKVYVHRNLRSSEIAVQLLECYSCQLLPWIHENGGSEDFVMQFAVDIWSQAG 688

Query: 1793 NNMSFCISSQEQKLLPAAMTAMQYAVGRCLVESQTVIVNRAFSMLSSTTSIPVKDLMN-E 1617
            N M      + + LL A M AM+ +VG C VESQ +I+ +A+S+LSS T+  +K++    
Sbjct: 689  NCMDLSTPFEGKGLLDAMMKAMRLSVGSCSVESQNLIIRKAYSVLSSHTNFQLKEVERLP 748

Query: 1616 TTPAKVEGFKSNDDLDCFSCRDKWIISLFASVVVALRPQAHITNVKVILQLFLTTQLYGH 1437
             TP K +           S RD+ IISLFASVV+A+ P+ +I N++V++ LF+ T L G 
Sbjct: 749  LTPGKYD----------ISLRDEGIISLFASVVIAVCPKTYIPNIRVLVHLFIITLLRGV 798

Query: 1436 VPSAQALGSIINKLPVKVENMDASKVFSLEEAMDMIFSSRVWILCNEGPTKFPVAGNNNE 1257
            VP AQALGSI+NKL       + S   +LEEA+D IF++++     +   +     N NE
Sbjct: 799  VPVAQALGSILNKLVSTSSTAENSSDLTLEEALDAIFNTKISFSSTDMLQRCNGTSNGNE 858

Query: 1256 -------IGFRNSLLVQSYAIEGLAWIGKGLLMRGHEKVKDIVVTLLSCLL--------- 1125
                   +G  N  ++Q  AI GL+W+GKGLL+RGHEK+KDI +  + CL+         
Sbjct: 859  MVFTDICLGIANDRMLQINAICGLSWMGKGLLLRGHEKIKDITMIFMECLISGTKSASPL 918

Query: 1124 ----LSNNEQG--HLSIMRSAADAFYILISDSEACLNKRLHATIRPLYKQRLFSIVLPVI 963
                L N E+    L +++ A DAF++L+SDSE CLN++ HATIRPLYKQR FS V+P++
Sbjct: 919  IKDSLENTEEQIQDLLVIKCATDAFHVLMSDSEVCLNRKFHATIRPLYKQRFFSSVMPIL 978

Query: 962  LSLITKADSSIQRAMLYRAFANVVCGTPLGAILSEAKKLIPILVDSLSVLSEDILHKDIV 783
              +ITK+ SS+ R+ LYRAFA+++  TP+ AI+SEAKKLIP+L+D LS+L+E I  KD++
Sbjct: 979  QQIITKSHSSLSRSFLYRAFAHIMSDTPMVAIVSEAKKLIPVLLDCLSMLTE-IQDKDML 1037

Query: 782  YSVLLVLSGILTDKKRSEVVVENTHIIIRRLIALVSYPHMMVIRETAIQCLTAMSELPHA 603
            Y +LLVLSGIL +K   E VVEN HIII  LI LV YPH M++RETAIQCL A+SELPHA
Sbjct: 1038 YGLLLVLSGILMEKNGQEAVVENAHIIINCLIKLVGYPHKMLVRETAIQCLVALSELPHA 1097

Query: 602  RIYPMRTQVLLSISKTLDDPKRAVRQEAVKCRQAWASI 489
            RIYPMRTQVL +ISK LDD KRAVR EAVKCRQ WAS+
Sbjct: 1098 RIYPMRTQVLRAISKCLDDSKRAVRHEAVKCRQTWASM 1135


>ref|XP_003597674.1| MMS19 nucleotide excision repair protein-like protein [Medicago
            truncatula] gi|355486722|gb|AES67925.1| MMS19 nucleotide
            excision repair protein-like protein [Medicago
            truncatula]
          Length = 1140

 Score =  497 bits (1280), Expect = e-138
 Identities = 278/580 (47%), Positives = 373/580 (64%), Gaps = 24/580 (4%)
 Frame = -3

Query: 2153 FVDKSDDTEKARSFDAIVVDKIASLMLCDDLTMSSQLKLEIISSIGTTGLSYMQKILQGL 1974
            FV K  ++EKA S+ + VVDKI  ++  DD+ +   LK+E +  IG TG+  M  ILQ +
Sbjct: 566  FVQKFSESEKAMSYRSFVVDKIMEMLSLDDIALPFSLKVEALYDIGMTGMKNMLTILQAM 625

Query: 1973 EXXXXXXXSGVYVNGDPELLGIATSLLECYSCKVLPWFDSIGGHEEVQFHFALNIWDQIE 1794
            E       S V+ N        A  LLECYSCK+LPW    GG EE    FA++IW+Q  
Sbjct: 626  EGAIFTNLSEVHSNLTSH--ETAVQLLECYSCKLLPWILKNGGAEEFVVQFAVDIWNQAG 683

Query: 1793 NNMSFCISSQEQKLLPAAMTAMQYAVGRCLVESQTVIVNRAFSMLSSTTSIPVKDLMN-E 1617
            N M F    +++ LL A M AM+ +VG C VESQ V + +A+S LSS T   + D+    
Sbjct: 684  NCMDFNSPFEDKGLLDAMMKAMKVSVGCCSVESQNVTIQKAYSTLSSHTKFQLNDVGRLP 743

Query: 1616 TTPAKVEGFKSNDDLDCFSCRDKWIISLFASVVVALRPQAHITNVKVILQLFLTTQLYGH 1437
             T  K +           S RD+ I+ LFASV++ALRP+ HI N++ +L LF+ T L G 
Sbjct: 744  LTSGKYD----------ISPRDEGILLLFASVIIALRPKTHIPNIRGLLHLFIITLLKGV 793

Query: 1436 VPSAQALGSIINKLPVKVENMDASKVFSLEEAMDMIFSSRVWILCNEGPTKFPVAGNNNE 1257
            VP AQALGS++NKL  K    + S   +LEEA+D+IF++++W   N     +  + N ++
Sbjct: 794  VPVAQALGSMLNKLTSKSNGAEKSDELTLEEALDIIFNTKIWFSSNNMLQIYNGSSNGSD 853

Query: 1256 I-------GFRNSLLVQSYAIEGLAWIGKGLLMRGHEKVKDIVVTLLSCLL--------- 1125
            I       G  N  L+QS AI GL+WIGKGLL+RGHEK+KDI +    CL+         
Sbjct: 854  IVLTDLCLGITNDRLLQSNAICGLSWIGKGLLLRGHEKIKDITMIFTECLISDRRKTSVP 913

Query: 1124 -----LSNNEQGHLSIM--RSAADAFYILISDSEACLNKRLHATIRPLYKQRLFSIVLPV 966
                 L N E+     +  + A +AF++L+SD+E CLN++ HAT+RPLYKQR FS ++P+
Sbjct: 914  LVEGSLENTEKQKCDPLARKCATEAFHVLMSDAEDCLNRKFHATVRPLYKQRFFSSMMPI 973

Query: 965  ILSLITKADSSIQRAMLYRAFANVVCGTPLGAILSEAKKLIPILVDSLSVLSEDILHKDI 786
             L LI+++DS + R++L RAFA+V+  TPL  IL+EAKKLIP+L+D L +L+EDI  KDI
Sbjct: 974  FLQLISRSDSLLSRSLLLRAFAHVMSDTPLIVILNEAKKLIPVLLDCLFMLTEDIQDKDI 1033

Query: 785  VYSVLLVLSGILTDKKRSEVVVENTHIIIRRLIALVSYPHMMVIRETAIQCLTAMSELPH 606
            +Y +LLVLSG+LT+K   E V+EN HIII  LI LV YPH  ++RETAIQCL A+SELPH
Sbjct: 1034 LYGLLLVLSGMLTEKNGQEAVIENAHIIINGLIKLVDYPHKTLVRETAIQCLVALSELPH 1093

Query: 605  ARIYPMRTQVLLSISKTLDDPKRAVRQEAVKCRQAWASIA 486
             RIYP+RTQVL +I K LDD KR+VR EAVKCRQAWASIA
Sbjct: 1094 VRIYPLRTQVLQAIFKCLDDTKRSVRNEAVKCRQAWASIA 1133