BLASTX nr result
ID: Cnidium21_contig00022501
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Cnidium21_contig00022501 (642 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_004159855.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 64 3e-08 ref|XP_004134468.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 64 3e-08 ref|XP_002274485.2| PREDICTED: uncharacterized protein LOC100252... 59 6e-07 ref|XP_003594626.1| DEAD-box ATP-dependent RNA helicase [Medicag... 55 9e-06 >ref|XP_004159855.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 40-like [Cucumis sativus] Length = 1127 Score = 63.5 bits (153), Expect = 3e-08 Identities = 40/112 (35%), Positives = 46/112 (41%), Gaps = 7/112 (6%) Frame = +2 Query: 2 RGGMRDGNFGDRSGMRDNNFGDRGSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX- 178 RGG RDG FG R GMRD FG RG M Sbjct: 884 RGGARDGGFGGRGGMRDGGFGGRGGMRDGPGGRGGRGDFFSIRGRGRGFGGPPGGHVGWG 943 Query: 179 ------PPDRYNSIDXXXXXXXXXXYDNRSDAAGRSRDRNYSPSPERGVRTW 316 P +R+N +D +DNR D + RSR R+YS SPER VRTW Sbjct: 944 RGDRGGPHNRFNGVDGRGRGRGQGRFDNRRDLSNRSRGRSYSRSPER-VRTW 994 >ref|XP_004134468.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 40-like [Cucumis sativus] Length = 1125 Score = 63.5 bits (153), Expect = 3e-08 Identities = 40/112 (35%), Positives = 46/112 (41%), Gaps = 7/112 (6%) Frame = +2 Query: 2 RGGMRDGNFGDRSGMRDNNFGDRGSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX- 178 RGG RDG FG R GMRD FG RG M Sbjct: 884 RGGARDGGFGGRGGMRDGGFGGRGGMRDGPGGRGGRGDFFSIRGRGRGFGGPPGGHVGWG 943 Query: 179 ------PPDRYNSIDXXXXXXXXXXYDNRSDAAGRSRDRNYSPSPERGVRTW 316 P +R+N +D +DNR D + RSR R+YS SPER VRTW Sbjct: 944 RGDRGGPHNRFNGVDGRGRGRGQGRFDNRRDLSNRSRGRSYSRSPER-VRTW 994 >ref|XP_002274485.2| PREDICTED: uncharacterized protein LOC100252874 [Vitis vinifera] Length = 1165 Score = 59.3 bits (142), Expect = 6e-07 Identities = 39/111 (35%), Positives = 45/111 (40%), Gaps = 8/111 (7%) Frame = +2 Query: 8 GMRDGNFGDRSGMRDNNFGDRGSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXP-- 181 GMRDG FG R GMRD FG RG M Sbjct: 922 GMRDGGFGGRGGMRDGGFGGRGGMRDGAVGGHSGRNDFFSGRGNRGRGFGGPGGGNVGWG 981 Query: 182 ------PDRYNSIDXXXXXXXXXXYDNRSDAAGRSRDRNYSPSPERGVRTW 316 DRY+++D +DNR D A RSR R+YS SPE+ VRTW Sbjct: 982 RNERGLHDRYSNMDGRGRGRGRGRFDNRRDVADRSRGRSYSSSPEK-VRTW 1031 >ref|XP_003594626.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula] gi|355483674|gb|AES64877.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula] Length = 1182 Score = 55.5 bits (132), Expect = 9e-06 Identities = 43/114 (37%), Positives = 47/114 (41%), Gaps = 9/114 (7%) Frame = +2 Query: 2 RGGMRDGN-FGDRSGMRDNNFGDRGSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 178 RGGMRDG FG R GMRD FG RG M Sbjct: 943 RGGMRDGGGFGGRGGMRDGGFGGRGGMRDGVGGSGGRGDFFPGRGNRGRGFDAPRGGNVG 1002 Query: 179 --------PPDRYNSIDXXXXXXXXXXYDNRSDAAGRSRDRNYSPSPERGVRTW 316 P DRYN +D +DNR D RSRDR+YS SP+R VRTW Sbjct: 1003 WGRGDRGGPGDRYN-MDGRGQGRGRGRFDNRRDVQ-RSRDRSYSRSPDR-VRTW 1053