BLASTX nr result

ID: Cnidium21_contig00022501 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00022501
         (642 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004159855.1| PREDICTED: DEAD-box ATP-dependent RNA helica...    64   3e-08
ref|XP_004134468.1| PREDICTED: DEAD-box ATP-dependent RNA helica...    64   3e-08
ref|XP_002274485.2| PREDICTED: uncharacterized protein LOC100252...    59   6e-07
ref|XP_003594626.1| DEAD-box ATP-dependent RNA helicase [Medicag...    55   9e-06

>ref|XP_004159855.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 40-like [Cucumis
            sativus]
          Length = 1127

 Score = 63.5 bits (153), Expect = 3e-08
 Identities = 40/112 (35%), Positives = 46/112 (41%), Gaps = 7/112 (6%)
 Frame = +2

Query: 2    RGGMRDGNFGDRSGMRDNNFGDRGSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX- 178
            RGG RDG FG R GMRD  FG RG M                                  
Sbjct: 884  RGGARDGGFGGRGGMRDGGFGGRGGMRDGPGGRGGRGDFFSIRGRGRGFGGPPGGHVGWG 943

Query: 179  ------PPDRYNSIDXXXXXXXXXXYDNRSDAAGRSRDRNYSPSPERGVRTW 316
                  P +R+N +D          +DNR D + RSR R+YS SPER VRTW
Sbjct: 944  RGDRGGPHNRFNGVDGRGRGRGQGRFDNRRDLSNRSRGRSYSRSPER-VRTW 994


>ref|XP_004134468.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 40-like [Cucumis
            sativus]
          Length = 1125

 Score = 63.5 bits (153), Expect = 3e-08
 Identities = 40/112 (35%), Positives = 46/112 (41%), Gaps = 7/112 (6%)
 Frame = +2

Query: 2    RGGMRDGNFGDRSGMRDNNFGDRGSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX- 178
            RGG RDG FG R GMRD  FG RG M                                  
Sbjct: 884  RGGARDGGFGGRGGMRDGGFGGRGGMRDGPGGRGGRGDFFSIRGRGRGFGGPPGGHVGWG 943

Query: 179  ------PPDRYNSIDXXXXXXXXXXYDNRSDAAGRSRDRNYSPSPERGVRTW 316
                  P +R+N +D          +DNR D + RSR R+YS SPER VRTW
Sbjct: 944  RGDRGGPHNRFNGVDGRGRGRGQGRFDNRRDLSNRSRGRSYSRSPER-VRTW 994


>ref|XP_002274485.2| PREDICTED: uncharacterized protein LOC100252874 [Vitis vinifera]
          Length = 1165

 Score = 59.3 bits (142), Expect = 6e-07
 Identities = 39/111 (35%), Positives = 45/111 (40%), Gaps = 8/111 (7%)
 Frame = +2

Query: 8    GMRDGNFGDRSGMRDNNFGDRGSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXP-- 181
            GMRDG FG R GMRD  FG RG M                                    
Sbjct: 922  GMRDGGFGGRGGMRDGGFGGRGGMRDGAVGGHSGRNDFFSGRGNRGRGFGGPGGGNVGWG 981

Query: 182  ------PDRYNSIDXXXXXXXXXXYDNRSDAAGRSRDRNYSPSPERGVRTW 316
                   DRY+++D          +DNR D A RSR R+YS SPE+ VRTW
Sbjct: 982  RNERGLHDRYSNMDGRGRGRGRGRFDNRRDVADRSRGRSYSSSPEK-VRTW 1031


>ref|XP_003594626.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
            gi|355483674|gb|AES64877.1| DEAD-box ATP-dependent RNA
            helicase [Medicago truncatula]
          Length = 1182

 Score = 55.5 bits (132), Expect = 9e-06
 Identities = 43/114 (37%), Positives = 47/114 (41%), Gaps = 9/114 (7%)
 Frame = +2

Query: 2    RGGMRDGN-FGDRSGMRDNNFGDRGSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 178
            RGGMRDG  FG R GMRD  FG RG M                                 
Sbjct: 943  RGGMRDGGGFGGRGGMRDGGFGGRGGMRDGVGGSGGRGDFFPGRGNRGRGFDAPRGGNVG 1002

Query: 179  --------PPDRYNSIDXXXXXXXXXXYDNRSDAAGRSRDRNYSPSPERGVRTW 316
                    P DRYN +D          +DNR D   RSRDR+YS SP+R VRTW
Sbjct: 1003 WGRGDRGGPGDRYN-MDGRGQGRGRGRFDNRRDVQ-RSRDRSYSRSPDR-VRTW 1053


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