BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00022168
         (1189 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003548054.1| PREDICTED: exosome complex component RRP42-l...   406   e-111
ref|XP_002285435.1| PREDICTED: exosome complex component RRP42 [...   405   e-110
ref|XP_003518190.1| PREDICTED: exosome complex component RRP42-l...   402   e-110
ref|XP_002321194.1| predicted protein [Populus trichocarpa] gi|2...   402   e-110
ref|XP_002882547.1| predicted protein [Arabidopsis lyrata subsp....   399   e-109

>ref|XP_003548054.1| PREDICTED: exosome complex component RRP42-like [Glycine max]
          Length = 286

 Score =  406 bits (1044), Expect = e-111
 Identities = 209/277 (75%), Positives = 230/277 (83%)
 Frame = -3

Query: 1115 MVGLSIGEKHFIEGGIAQDIRTDGRKRLIYRPIQVQTGVIPQANGSARVRMGGTEVIASV 936
            MVGLS+GE HFI+GGIAQD+R DGRKRL YRPI V+TGVIPQ NGSARVRMG T+VIASV
Sbjct: 1    MVGLSLGETHFIQGGIAQDLRCDGRKRLTYRPISVETGVIPQTNGSARVRMGATDVIASV 60

Query: 935  KAELGRPSSLQPDKGKVFINVDCSPTAAPIFEGRXXXXXXXXXXXXLQICLLGGKSGAGA 756
            KAELG+PS LQPDKGKV I VDCS TA P FEGR            LQ CLLGGKSGAGA
Sbjct: 61   KAELGKPSLLQPDKGKVSIYVDCSSTAEPAFEGRGGDELAAELSNALQRCLLGGKSGAGA 120

Query: 755  GIDLSSLSIVGGKICWDLYIDGLVVSXXXXXXXXXXXAIKAALSNTGIPKVNVAAGASSD 576
            GIDLSSL +V GKICWDLYIDGLVVS           AIKAALSNTGIP+V VAAG S+D
Sbjct: 121  GIDLSSLIVVEGKICWDLYIDGLVVSSDGNLLDALGAAIKAALSNTGIPRVQVAAGTSND 180

Query: 575  EQPEVDISDEEFLQFDTSAVPVIITLTKVGRHYIVDATPEEESHMNSAISMSVNRRGNLC 396
            E PEVD+SDEEFLQFDTS VPVI+TLTKVGRHYIVDAT EEES M+SA+S+SVNR+G++C
Sbjct: 181  EHPEVDVSDEEFLQFDTSRVPVIVTLTKVGRHYIVDATSEEESQMSSAVSISVNRQGHIC 240

Query: 395  GLTKRGSSGLDPSVLLDMISVGKHVSEQLMNKLDSEI 285
            G+TKRG  GLDPS++LDMISV KHVSEQL+NKLDSEI
Sbjct: 241  GITKRGGVGLDPSIILDMISVAKHVSEQLINKLDSEI 277


>ref|XP_002285435.1| PREDICTED: exosome complex component RRP42 [Vitis vinifera]
            gi|296082105|emb|CBI21110.3| unnamed protein product
            [Vitis vinifera]
          Length = 287

 Score =  405 bits (1040), Expect = e-110
 Identities = 208/277 (75%), Positives = 231/277 (83%)
 Frame = -3

Query: 1115 MVGLSIGEKHFIEGGIAQDIRTDGRKRLIYRPIQVQTGVIPQANGSARVRMGGTEVIASV 936
            MVGLS+GEKHFI+GGIAQD+RTDGR+RL YRP  V+TGVIPQANGSARVR+GGT+VIASV
Sbjct: 1    MVGLSVGEKHFIQGGIAQDLRTDGRRRLTYRPFNVETGVIPQANGSARVRLGGTDVIASV 60

Query: 935  KAELGRPSSLQPDKGKVFINVDCSPTAAPIFEGRXXXXXXXXXXXXLQICLLGGKSGAGA 756
            KAELG+PS  QPDKGKV I VDCSPTAAP+FEGR            LQ CLLGGKSGAGA
Sbjct: 61   KAELGKPSPSQPDKGKVNIYVDCSPTAAPMFEGRGGEELSTELSGALQHCLLGGKSGAGA 120

Query: 755  GIDLSSLSIVGGKICWDLYIDGLVVSXXXXXXXXXXXAIKAALSNTGIPKVNVAAGASSD 576
            GIDLSSL +V GK+CWDLYIDGLVVS           AIKAAL+NTGIPKV VA GAS D
Sbjct: 121  GIDLSSLVVVEGKVCWDLYIDGLVVSSDGNLLDALGAAIKAALTNTGIPKVEVAVGASGD 180

Query: 575  EQPEVDISDEEFLQFDTSAVPVIITLTKVGRHYIVDATPEEESHMNSAISMSVNRRGNLC 396
              PEVDISD+E+LQFDTS VPVI+TLTKVGRHYIVDAT EEES M+SA+S+SV+ +G +C
Sbjct: 181  GLPEVDISDDEYLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAVSVSVSGQGRIC 240

Query: 395  GLTKRGSSGLDPSVLLDMISVGKHVSEQLMNKLDSEI 285
            GL KRG +GLDPSV+LDMISV KHVSEQLMNKLDSEI
Sbjct: 241  GLIKRGGAGLDPSVILDMISVAKHVSEQLMNKLDSEI 277


>ref|XP_003518190.1| PREDICTED: exosome complex component RRP42-like [Glycine max]
          Length = 286

 Score =  402 bits (1034), Expect = e-110
 Identities = 206/277 (74%), Positives = 228/277 (82%)
 Frame = -3

Query: 1115 MVGLSIGEKHFIEGGIAQDIRTDGRKRLIYRPIQVQTGVIPQANGSARVRMGGTEVIASV 936
            MVGLS+GE HFI+GGIAQD+R DGRKRL YRPI V+TGVIPQ NGSARVRMG T+VIASV
Sbjct: 1    MVGLSLGETHFIQGGIAQDLRCDGRKRLTYRPISVETGVIPQTNGSARVRMGATDVIASV 60

Query: 935  KAELGRPSSLQPDKGKVFINVDCSPTAAPIFEGRXXXXXXXXXXXXLQICLLGGKSGAGA 756
            KAELG+PS LQPDKGKV I +DCS TA P FEGR            LQ CLLGGKSG GA
Sbjct: 61   KAELGKPSLLQPDKGKVSIYIDCSSTAEPAFEGRGGDELAAELSNALQHCLLGGKSGEGA 120

Query: 755  GIDLSSLSIVGGKICWDLYIDGLVVSXXXXXXXXXXXAIKAALSNTGIPKVNVAAGASSD 576
            GIDLSSL +V GKICWDLYIDGLVVS           AIKAALSNTGIP+V VAAG S+D
Sbjct: 121  GIDLSSLIVVEGKICWDLYIDGLVVSSDGNLLDALGAAIKAALSNTGIPRVEVAAGTSND 180

Query: 575  EQPEVDISDEEFLQFDTSAVPVIITLTKVGRHYIVDATPEEESHMNSAISMSVNRRGNLC 396
            E PEVD+SDEEFLQFDTS VPVI+TLTKVGRHYIVDAT EEES M+S +S+SVNR+G++C
Sbjct: 181  EHPEVDVSDEEFLQFDTSRVPVIVTLTKVGRHYIVDATSEEESQMSSGVSISVNRQGHIC 240

Query: 395  GLTKRGSSGLDPSVLLDMISVGKHVSEQLMNKLDSEI 285
            G+TKRG  GLDPS++LDMISV KHVSEQL+NKLDSEI
Sbjct: 241  GITKRGGVGLDPSIILDMISVAKHVSEQLINKLDSEI 277


>ref|XP_002321194.1| predicted protein [Populus trichocarpa] gi|222861967|gb|EEE99509.1|
            predicted protein [Populus trichocarpa]
          Length = 287

 Score =  402 bits (1034), Expect = e-110
 Identities = 203/277 (73%), Positives = 233/277 (84%)
 Frame = -3

Query: 1115 MVGLSIGEKHFIEGGIAQDIRTDGRKRLIYRPIQVQTGVIPQANGSARVRMGGTEVIASV 936
            MVGLS+GEKHFI+GGI Q++R+DGRKR  YRPI ++TGVIPQANGSAR+R+G TEVIASV
Sbjct: 1    MVGLSLGEKHFIQGGIDQNLRSDGRKRDAYRPISIETGVIPQANGSARIRIGATEVIASV 60

Query: 935  KAELGRPSSLQPDKGKVFINVDCSPTAAPIFEGRXXXXXXXXXXXXLQICLLGGKSGAGA 756
            KAELGRP++LQPDKGKV I VDCSP A P+FEGR            LQ CLLGGKSGAGA
Sbjct: 61   KAELGRPNALQPDKGKVAIFVDCSPVAEPMFEGRGGEELSAELSVALQRCLLGGKSGAGA 120

Query: 755  GIDLSSLSIVGGKICWDLYIDGLVVSXXXXXXXXXXXAIKAALSNTGIPKVNVAAGASSD 576
            GIDLSSL +  GKICWDLYIDGLV+S           AIKAALSNTGIP+V VAAGAS D
Sbjct: 121  GIDLSSLIVAEGKICWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPRVQVAAGASGD 180

Query: 575  EQPEVDISDEEFLQFDTSAVPVIITLTKVGRHYIVDATPEEESHMNSAISMSVNRRGNLC 396
            EQPEVDISDEEF+QFDTS VPVI+TLTKVGRHYIVDAT EEES M+SA+S+S++R+G +C
Sbjct: 181  EQPEVDISDEEFMQFDTSGVPVIVTLTKVGRHYIVDATSEEESQMSSAVSVSISRKGQIC 240

Query: 395  GLTKRGSSGLDPSVLLDMISVGKHVSEQLMNKLDSEI 285
            GL+KRGS+GLDPSV+ DMISV +H+SEQL+NKLDSEI
Sbjct: 241  GLSKRGSAGLDPSVISDMISVARHISEQLINKLDSEI 277


>ref|XP_002882547.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
            gi|297328387|gb|EFH58806.1| predicted protein
            [Arabidopsis lyrata subsp. lyrata]
          Length = 287

 Score =  399 bits (1026), Expect = e-109
 Identities = 202/277 (72%), Positives = 232/277 (83%)
 Frame = -3

Query: 1115 MVGLSIGEKHFIEGGIAQDIRTDGRKRLIYRPIQVQTGVIPQANGSARVRMGGTEVIASV 936
            MVGLS+GE+HF++GGIAQD+RTDGRKRL YRPI V+TGVIPQANGSARV++GGT+VIASV
Sbjct: 1    MVGLSLGEQHFVKGGIAQDLRTDGRKRLTYRPIYVETGVIPQANGSARVKIGGTDVIASV 60

Query: 935  KAELGRPSSLQPDKGKVFINVDCSPTAAPIFEGRXXXXXXXXXXXXLQICLLGGKSGAGA 756
            KAE+GRPSSLQPDKGKV + +DCSPTA P F GR            LQ CLLGGKSGAGA
Sbjct: 61   KAEIGRPSSLQPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGA 120

Query: 755  GIDLSSLSIVGGKICWDLYIDGLVVSXXXXXXXXXXXAIKAALSNTGIPKVNVAAGASSD 576
            GI+LSSL I  GK+CWDLYIDGLV+S           AIKAAL+NT IPKVNV+A  + D
Sbjct: 121  GINLSSLLIKEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIPKVNVSAEVADD 180

Query: 575  EQPEVDISDEEFLQFDTSAVPVIITLTKVGRHYIVDATPEEESHMNSAISMSVNRRGNLC 396
            EQPE+DISDEE+LQFDTS+VPVI+TLTKVG HYIVDAT EEES M+SA+S+SVNR G++C
Sbjct: 181  EQPEIDISDEEYLQFDTSSVPVIVTLTKVGTHYIVDATAEEESQMSSAVSISVNRAGHIC 240

Query: 395  GLTKRGSSGLDPSVLLDMISVGKHVSEQLMNKLDSEI 285
            GLTKRG SGLDPSV+LDMISV KHV+E LM+KLDSEI
Sbjct: 241  GLTKRGGSGLDPSVILDMISVAKHVTENLMSKLDSEI 277