BLASTX nr result

ID: Cnidium21_contig00022103 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00022103
         (391 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002316075.1| predicted protein [Populus trichocarpa] gi|2...   139   2e-31
ref|XP_002274904.1| PREDICTED: pentatricopeptide repeat-containi...   139   3e-31
emb|CAN74604.1| hypothetical protein VITISV_025315 [Vitis vinifera]   137   9e-31
ref|XP_004138596.1| PREDICTED: pentatricopeptide repeat-containi...   136   2e-30
ref|XP_003550709.1| PREDICTED: pentatricopeptide repeat-containi...   135   3e-30

>ref|XP_002316075.1| predicted protein [Populus trichocarpa] gi|222865115|gb|EEF02246.1|
           predicted protein [Populus trichocarpa]
          Length = 434

 Score =  139 bits (351), Expect = 2e-31
 Identities = 68/83 (81%), Positives = 74/83 (89%)
 Frame = -1

Query: 391 IFHKVISTVQLAGKLEIPENTSFFNAVIFACAKADDLMEMERVFKRMKDKECKPDSITYT 212
           +FHKVIS+VQLA K EIPENTSFFNAVI ACAKADDLMEMERVFKRMKDK+C PDS TY+
Sbjct: 349 LFHKVISSVQLAAKFEIPENTSFFNAVISACAKADDLMEMERVFKRMKDKQCPPDSRTYS 408

Query: 211 LMMEAYRKEGMTDKAYDLELEKQ 143
           +M+EAYRKEGM DK Y LE EKQ
Sbjct: 409 IMVEAYRKEGMNDKIYYLEQEKQ 431


>ref|XP_002274904.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
           chloroplastic [Vitis vinifera]
          Length = 498

 Score =  139 bits (349), Expect = 3e-31
 Identities = 65/93 (69%), Positives = 78/93 (83%)
 Frame = -1

Query: 391 IFHKVISTVQLAGKLEIPENTSFFNAVIFACAKADDLMEMERVFKRMKDKECKPDSITYT 212
           +FHKV+S+VQLAGK EIPENTSF+NAVI ACAKA+DL+EMERVF RMKDK C+PDS TY+
Sbjct: 406 LFHKVVSSVQLAGKFEIPENTSFYNAVISACAKAEDLIEMERVFNRMKDKHCQPDSTTYS 465

Query: 211 LMMEAYRKEGMTDKAYDLELEKQILDGSNSKED 113
           +M+EAY+KEGM DK YDLE E+Q +     K D
Sbjct: 466 IMVEAYKKEGMNDKIYDLEQERQRMVADGPKGD 498


>emb|CAN74604.1| hypothetical protein VITISV_025315 [Vitis vinifera]
          Length = 525

 Score =  137 bits (345), Expect = 9e-31
 Identities = 63/83 (75%), Positives = 75/83 (90%)
 Frame = -1

Query: 391 IFHKVISTVQLAGKLEIPENTSFFNAVIFACAKADDLMEMERVFKRMKDKECKPDSITYT 212
           +FHKV+S+VQLAGK EIPENTSF+NAVI ACAKA+DL+EMERVF RMKDK C+PDS TY+
Sbjct: 406 LFHKVVSSVQLAGKFEIPENTSFYNAVISACAKAEDLIEMERVFNRMKDKHCQPDSTTYS 465

Query: 211 LMMEAYRKEGMTDKAYDLELEKQ 143
           +M+EAY+KEGM DK YDLE E+Q
Sbjct: 466 IMVEAYKKEGMNDKIYDLEQERQ 488


>ref|XP_004138596.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
           chloroplastic-like [Cucumis sativus]
           gi|449522692|ref|XP_004168360.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g06430,
           chloroplastic-like [Cucumis sativus]
          Length = 496

 Score =  136 bits (343), Expect = 2e-30
 Identities = 65/93 (69%), Positives = 82/93 (88%), Gaps = 1/93 (1%)
 Frame = -1

Query: 391 IFHKVISTVQLAGKLEIPENTSFFNAVIFACAKADDLMEMERVFKRMKDKECKPDSITYT 212
           +FHKVI +V+LAGKLEIPENTSF+NAVI ACAKA+DLMEM+RVFKRMKDK C+PD+ TY+
Sbjct: 404 LFHKVIGSVKLAGKLEIPENTSFYNAVISACAKAEDLMEMDRVFKRMKDKHCQPDNKTYS 463

Query: 211 LMMEAYRKEGMTDKAYDLELE-KQILDGSNSKE 116
           +MMEAY KEGM D+ + LELE KQ++D +++ E
Sbjct: 464 IMMEAYGKEGMNDRVHYLELEKKQVIDNASNNE 496


>ref|XP_003550709.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
           chloroplastic-like [Glycine max]
          Length = 488

 Score =  135 bits (341), Expect = 3e-30
 Identities = 64/94 (68%), Positives = 78/94 (82%)
 Frame = -1

Query: 391 IFHKVISTVQLAGKLEIPENTSFFNAVIFACAKADDLMEMERVFKRMKDKECKPDSITYT 212
           +FHKVIS+V+LAGKLEIPEN +F+NAV+ ACAKA+DLMEMERVFKRMKD +C+PD  TYT
Sbjct: 388 LFHKVISSVRLAGKLEIPENITFYNAVLSACAKAEDLMEMERVFKRMKDSQCQPDDTTYT 447

Query: 211 LMMEAYRKEGMTDKAYDLELEKQILDGSNSKEDE 110
           +M+EAYRKEGM DK Y LE EKQ +   + K  +
Sbjct: 448 IMIEAYRKEGMNDKIYYLEQEKQTMMTDDKKASQ 481


Top