BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00021597
         (1440 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum...   589   e-166
gb|ABG29321.1| DNA-directed RNA polymerase, putative [Solanum bu...   565   e-158
emb|CBI21137.3| unnamed protein product [Vitis vinifera]              556   e-156
ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D sub...   556   e-156
ref|XP_002324332.1| predicted protein [Populus trichocarpa] gi|2...   516   e-144

>gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum lycopersicum]
          Length = 1123

 Score =  589 bits (1518), Expect = e-166
 Identities = 290/476 (60%), Positives = 358/476 (75%), Gaps = 9/476 (1%)
 Frame = -2

Query: 1403 EAMDVDYRCDESDD--------LLRGLEEVELKRFLKTATQSFFKQYGLISHQLNSYNEF 1248
            E  D D+  DE +D        L++ L E  LK F K A+  FF++YG ISHQ+NSYN+F
Sbjct: 29   EVDDDDWDEDEDEDEDDSHDMVLIKELGESFLKNFCKKASTGFFEKYGSISHQINSYNDF 88

Query: 1247 IRNGIQEVFDSVGEIIVKPLCDSSQCGDGEWRSASVKFGKVTFEQPKFYAGEKFSTDDGD 1068
            I  GIQ VFDSVGEI V+P  D S+ GDG+W+ ASVKFGKVT E+PKF+AGEKFS   G 
Sbjct: 89   INYGIQRVFDSVGEIHVEPGYDPSKRGDGDWKHASVKFGKVTLERPKFWAGEKFSVGGGK 148

Query: 1067 CFVDMLPRHARLQNMTYAARMQVQVNFKVYNEKMVRSDNFGNDEHQYIEKVLSSENCTEM 888
             ++D+LPRHARLQNMTY+AR+ V+ + +VY +K+VRSD F     ++++K    E   ++
Sbjct: 149  EYLDLLPRHARLQNMTYSARIMVETHVQVYTKKLVRSDKFKTGVDRFVDKEWEVEGKRDV 208

Query: 887  IIGKLPVMVKSDLCWTKGVNKGDCDFDHGGYFIINGAEKIFVAQEQSCLKRLWLSRNPSW 708
            +IG++PVMV S+LCW  GV+K DC+FDHGGYFI  GAEK F+AQEQ CLKRLW+S NP+W
Sbjct: 209  LIGRIPVMVNSELCWMNGVDKLDCEFDHGGYFIAKGAEKTFIAQEQLCLKRLWVSNNPTW 268

Query: 707  IASYRHTFIRKRVHVKLVDTSKIQQTVG-RKVLSVFFLTEMPIWILFFALGVSSDKEVVN 531
            +  YR    RKRV++KL +T K++   G  K LSV+ L EMPIW+LFFALGVSSD+EVVN
Sbjct: 269  MVGYRPGEKRKRVYIKLTETLKLEHIKGGEKALSVYILAEMPIWVLFFALGVSSDREVVN 328

Query: 530  LIDADAEDDTVVNILRASMREADKQCENFRRSGMALRYLEKEFKTCEFPPEESVKECIDK 351
            LID D ED T+VNIL AS+ EADK CE+FR+   AL Y+++  K C+FPP+ESV+ECI+ 
Sbjct: 329  LIDVDIEDTTIVNILVASIHEADKNCEDFRKGKKALAYVDRLIKNCKFPPQESVEECINA 388

Query: 350  LLFPKLIGIKQKARFLAYMVKCLLKAYTGRRKFDCRDDFRNKRLELANELLDREFRVHIN 171
             LFP L G KQKARFL YMVKCLL ++ GRRK D RDDFRNKRLELA ELL+RE R HI 
Sbjct: 389  YLFPNLSGFKQKARFLGYMVKCLLHSFIGRRKVDNRDDFRNKRLELAGELLERELRAHIK 448

Query: 170  HAKRRMIKVMQRDLDGDRTMNRIEHYLDCSIITNGLSRAFSAGGWSHPYKRAEKIS 3
            HA+RRM+K MQRDL GDR +  IEHYLD SIITNGLSRAFS G W HPYKR E++S
Sbjct: 449  HAERRMVKAMQRDLYGDRQVQPIEHYLDASIITNGLSRAFSTGHWCHPYKRMERVS 504


>gb|ABG29321.1| DNA-directed RNA polymerase, putative [Solanum bulbocastanum]
          Length = 1018

 Score =  565 bits (1455), Expect = e-158
 Identities = 275/475 (57%), Positives = 361/475 (76%), Gaps = 3/475 (0%)
 Frame = -2

Query: 1418 GLMGIEAMDVDYRCDESD--DLLRGLEEVELKRFLKTATQSFFKQYGLISHQLNSYNEFI 1245
            GL  ++  D D   DE D  D+ + L    L+ F K A+  FF++YG+ISHQ++SYN+FI
Sbjct: 38   GLFEVDDYDWDEDEDEDDNLDMAKELGGGFLRNFCKKASAGFFEKYGVISHQIDSYNDFI 97

Query: 1244 RNGIQEVFDSVGEIIVKPLCDSSQCGDGEWRSASVKFGKVTFEQPKFYAGEKFSTDDGDC 1065
            R GIQ VFDSVGEI V+P  D S+ G+G+W+ ASVKFGKVT ++PKF+AGEKFS  +G+ 
Sbjct: 98   RYGIQRVFDSVGEIHVEPGYDPSKKGEGDWKHASVKFGKVTLDRPKFWAGEKFSAYNGEE 157

Query: 1064 FVDMLPRHARLQNMTYAARMQVQVNFKVYNEKMVRSDNFGNDEHQYIEKVLSSENCTEMI 885
            ++++ PRHARLQNMTY+AR+ V+ +  V+ +K+VRSD F     Q+++K    E+  ++ 
Sbjct: 158  YLNLWPRHARLQNMTYSARIIVETH--VFTKKLVRSDKFKTGVEQFVDKECVMEDKRDVF 215

Query: 884  IGKLPVMVKSDLCWTKGVNKGDCDFDHGGYFIINGAEKIFVAQEQSCLKRLWLSRNPSWI 705
            IG++PVMV S+LCW  G ++ DC+FDHGGYFI+ GAEKIF+AQEQ CLKRLW+S + +W+
Sbjct: 216  IGRIPVMVNSELCWMSGADRPDCEFDHGGYFIVKGAEKIFIAQEQICLKRLWVSNHSTWM 275

Query: 704  ASYRHTFIRKRVHVKLVDTSKIQQTVGR-KVLSVFFLTEMPIWILFFALGVSSDKEVVNL 528
             +YR    R RV++KL +T K +   G  K LSV+F  EMPIW+LFFALGVSSD+EVV+L
Sbjct: 276  VAYRSGEKRNRVYLKLTETLKHEHIKGEAKALSVYFFAEMPIWVLFFALGVSSDREVVDL 335

Query: 527  IDADAEDDTVVNILRASMREADKQCENFRRSGMALRYLEKEFKTCEFPPEESVKECIDKL 348
            ID D +D  ++NIL AS+ +ADK CE+FR+   AL Y+++  K+C+FPP+ESV+ECI + 
Sbjct: 336  IDVDIKDTNIINILVASIHDADKNCEDFRKGKKALAYVDRLVKSCKFPPQESVEECIKEY 395

Query: 347  LFPKLIGIKQKARFLAYMVKCLLKAYTGRRKFDCRDDFRNKRLELANELLDREFRVHINH 168
            LFP L G+KQKARFL YMVKCLL +Y GRRK D RDDFRNKRL+LA ELL+RE RVH+ H
Sbjct: 396  LFPNLSGLKQKARFLGYMVKCLLLSYIGRRKVDNRDDFRNKRLDLAGELLERELRVHVKH 455

Query: 167  AKRRMIKVMQRDLDGDRTMNRIEHYLDCSIITNGLSRAFSAGGWSHPYKRAEKIS 3
            A+RRM+K +QRDL GDR +  IEHYLD SIITNGLSRAFS G W HPYKR E++S
Sbjct: 456  AERRMVKALQRDLCGDRQVQPIEHYLDASIITNGLSRAFSTGHWCHPYKRMERVS 510


>emb|CBI21137.3| unnamed protein product [Vitis vinifera]
          Length = 1220

 Score =  556 bits (1432), Expect = e-156
 Identities = 279/469 (59%), Positives = 355/469 (75%), Gaps = 12/469 (2%)
 Frame = -2

Query: 1373 ESDDLLRGLEEVE------LKRFLKTATQSFFKQYGLISHQLNSYNEFIRNGIQEVFDSV 1212
            E DD L G  E++      LK F K    SFF +YGLI HQ+NS+N+FI+NGIQ VFDS 
Sbjct: 63   EIDDDLMGSIEIDDLNKEYLKTFCKKVAVSFFNEYGLIQHQINSFNDFIKNGIQRVFDSF 122

Query: 1211 GEIIVKPLCDSSQCGDGEWRSASVKFGKVTFEQPKFYAGEKFSTDDGDCFVDMLPRHARL 1032
            GEI V+P  D S+ G+G+WR ASV+FGKVT E+P+ +AGE     DG   ++ LPRHARL
Sbjct: 123  GEIPVEPGYDPSKRGEGDWRYASVRFGKVTLERPRVWAGES----DGKESLNFLPRHARL 178

Query: 1031 QNMTYAARMQVQVNFKVYNEKMVRSDNFGND-EHQYIEKVLSSENCTEMIIGKLPVMVKS 855
            QNMTY++RM+ QV+F+VY +K+VRSD +    +++Y+EK +  E+  +++IG++PVMVKS
Sbjct: 179  QNMTYSSRMKAQVHFQVYTQKLVRSDKYKTGKDNKYVEKKVIFEDNRDILIGRIPVMVKS 238

Query: 854  DLCWTKGVNKGDCDFDHGGYFIINGAEKIFVAQEQSCLKRLWLSRNPSWIASYRHTFIRK 675
            +LCW  GV +GDC++DHGGYF+I GAEK F+AQEQ CLKRLW+S NP+W+ +YR  + RK
Sbjct: 239  ELCWMNGVERGDCEYDHGGYFLIKGAEKTFIAQEQICLKRLWVSSNPTWMVAYRPIWKRK 298

Query: 674  RVHVKLVDTSKIQQTVGRKVLSVFFL-TEMPIWILFFALGVSSDKEVVNLIDADAEDDTV 498
            RV+VKL          G KVL+V+F  TE+PIWILFFALG SSDKEVV+LID + +D  +
Sbjct: 299  RVYVKLEPPKDENNRGGEKVLTVYFSSTEIPIWILFFALGASSDKEVVDLIDFNIDDAGI 358

Query: 497  VNILRASMREADKQCEN----FRRSGMALRYLEKEFKTCEFPPEESVKECIDKLLFPKLI 330
             NIL AS+ EAD++ E     FRR G A+ +++K  K+C+FPP ES++ECI K LFP   
Sbjct: 359  SNILVASIHEADREAEKKGMYFRRQGNAISFVDKLVKSCKFPPGESIQECISKYLFPNFS 418

Query: 329  GIKQKARFLAYMVKCLLKAYTGRRKFDCRDDFRNKRLELANELLDREFRVHINHAKRRMI 150
            G+KQKARFL YMVKCLL+AYTGRRK D RDDFRNKRLELA ELL+RE RVHI HA+RRM+
Sbjct: 419  GVKQKARFLGYMVKCLLQAYTGRRKCDNRDDFRNKRLELAGELLERELRVHIRHAERRMV 478

Query: 149  KVMQRDLDGDRTMNRIEHYLDCSIITNGLSRAFSAGGWSHPYKRAEKIS 3
            K MQR+L GDR +  IE+YLD SIITNGLSRAFS G WSHP+KR E+IS
Sbjct: 479  KAMQRELYGDRDLRPIENYLDASIITNGLSRAFSTGQWSHPFKRMERIS 527


>ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
            vinifera]
          Length = 1198

 Score =  556 bits (1432), Expect = e-156
 Identities = 279/469 (59%), Positives = 355/469 (75%), Gaps = 12/469 (2%)
 Frame = -2

Query: 1373 ESDDLLRGLEEVE------LKRFLKTATQSFFKQYGLISHQLNSYNEFIRNGIQEVFDSV 1212
            E DD L G  E++      LK F K    SFF +YGLI HQ+NS+N+FI+NGIQ VFDS 
Sbjct: 27   EIDDDLMGSIEIDDLNKEYLKTFCKKVAVSFFNEYGLIQHQINSFNDFIKNGIQRVFDSF 86

Query: 1211 GEIIVKPLCDSSQCGDGEWRSASVKFGKVTFEQPKFYAGEKFSTDDGDCFVDMLPRHARL 1032
            GEI V+P  D S+ G+G+WR ASV+FGKVT E+P+ +AGE     DG   ++ LPRHARL
Sbjct: 87   GEIPVEPGYDPSKRGEGDWRYASVRFGKVTLERPRVWAGES----DGKESLNFLPRHARL 142

Query: 1031 QNMTYAARMQVQVNFKVYNEKMVRSDNFGND-EHQYIEKVLSSENCTEMIIGKLPVMVKS 855
            QNMTY++RM+ QV+F+VY +K+VRSD +    +++Y+EK +  E+  +++IG++PVMVKS
Sbjct: 143  QNMTYSSRMKAQVHFQVYTQKLVRSDKYKTGKDNKYVEKKVIFEDNRDILIGRIPVMVKS 202

Query: 854  DLCWTKGVNKGDCDFDHGGYFIINGAEKIFVAQEQSCLKRLWLSRNPSWIASYRHTFIRK 675
            +LCW  GV +GDC++DHGGYF+I GAEK F+AQEQ CLKRLW+S NP+W+ +YR  + RK
Sbjct: 203  ELCWMNGVERGDCEYDHGGYFLIKGAEKTFIAQEQICLKRLWVSSNPTWMVAYRPIWKRK 262

Query: 674  RVHVKLVDTSKIQQTVGRKVLSVFFL-TEMPIWILFFALGVSSDKEVVNLIDADAEDDTV 498
            RV+VKL          G KVL+V+F  TE+PIWILFFALG SSDKEVV+LID + +D  +
Sbjct: 263  RVYVKLEPPKDENNRGGEKVLTVYFSSTEIPIWILFFALGASSDKEVVDLIDFNIDDAGI 322

Query: 497  VNILRASMREADKQCEN----FRRSGMALRYLEKEFKTCEFPPEESVKECIDKLLFPKLI 330
             NIL AS+ EAD++ E     FRR G A+ +++K  K+C+FPP ES++ECI K LFP   
Sbjct: 323  SNILVASIHEADREAEKKGMYFRRQGNAISFVDKLVKSCKFPPGESIQECISKYLFPNFS 382

Query: 329  GIKQKARFLAYMVKCLLKAYTGRRKFDCRDDFRNKRLELANELLDREFRVHINHAKRRMI 150
            G+KQKARFL YMVKCLL+AYTGRRK D RDDFRNKRLELA ELL+RE RVHI HA+RRM+
Sbjct: 383  GVKQKARFLGYMVKCLLQAYTGRRKCDNRDDFRNKRLELAGELLERELRVHIRHAERRMV 442

Query: 149  KVMQRDLDGDRTMNRIEHYLDCSIITNGLSRAFSAGGWSHPYKRAEKIS 3
            K MQR+L GDR +  IE+YLD SIITNGLSRAFS G WSHP+KR E+IS
Sbjct: 443  KAMQRELYGDRDLRPIENYLDASIITNGLSRAFSTGQWSHPFKRMERIS 491


>ref|XP_002324332.1| predicted protein [Populus trichocarpa] gi|222865766|gb|EEF02897.1|
            predicted protein [Populus trichocarpa]
          Length = 1160

 Score =  516 bits (1328), Expect = e-144
 Identities = 262/469 (55%), Positives = 339/469 (72%), Gaps = 4/469 (0%)
 Frame = -2

Query: 1397 MDVDYRCDESDDL-LRGLEEVELKRFLKTATQSFFKQYGLISHQLNSYNEFIRNGIQEVF 1221
            MD+D   D  D   L  L +  L+ F K A   FF +YGLISHQ+NSYN FI +G+Q VF
Sbjct: 1    MDMDMDEDLMDTTNLNELGKETLQSFCKKAASLFFDEYGLISHQINSYNSFINSGLQRVF 60

Query: 1220 DSVGEIIVKPLCDSSQCGDGEWRSASVKFGKVTFEQPKFYAGEKFSTDDGDCFVDMLPRH 1041
            DS GE+ V+P  DSS+  DGEWR ASV+FGKVT ++P F+ G        D   +M PRH
Sbjct: 61   DSFGEVAVEPGYDSSKQKDGEWRRASVRFGKVTLDRPSFWGGTS-----SDAEHNMFPRH 115

Query: 1040 ARLQNMTYAARMQVQVNFKVYNEKMVRSDNFGNDEHQYIEK-VLSSENCTEMIIGKLPVM 864
            ARLQNMTY+ARM++ VN +VY + + RSD F     + ++K V+ +EN  E+IIG++PVM
Sbjct: 116  ARLQNMTYSARMKIHVNVQVYTQTVGRSDKFKTGIDKVVQKNVVHTEN-REIIIGRIPVM 174

Query: 863  VKSDLCWTKGVNKGDCDFDHGGYFIINGAEKIFVAQEQSCLKRLWLSRNPSWIASYRHTF 684
            VKSDLCW   V KGDCDFDHGGYF+I GAEK+F+AQEQ C+KRLW+S +  W  SY+   
Sbjct: 175  VKSDLCWLTTVEKGDCDFDHGGYFLIKGAEKVFIAQEQICMKRLWISNSQGWTVSYKSEV 234

Query: 683  IRKRVHVKLVDTSKIQQTVG-RKVLSVFFL-TEMPIWILFFALGVSSDKEVVNLIDADAE 510
             R R+ V+LV+ SK++   G +K L V+FL TE+P+WILFFALGV SDKEV++LID  + 
Sbjct: 235  KRNRLIVRLVELSKLEYIKGEKKGLCVYFLSTEIPLWILFFALGVRSDKEVIDLIDYASN 294

Query: 509  DDTVVNILRASMREADKQCENFRRSGMALRYLEKEFKTCEFPPEESVKECIDKLLFPKLI 330
            D ++VNI  AS+ +AD++CE+FRR   AL Y++K  K   FPP+ES+++ I   LFP+L 
Sbjct: 295  DASIVNIFFASIHDADEKCEHFRREDRALDYVDKLLKKTRFPPKESIEDAISAYLFPRLN 354

Query: 329  GIKQKARFLAYMVKCLLKAYTGRRKFDCRDDFRNKRLELANELLDREFRVHINHAKRRMI 150
              + KARFL YMVKCLL+AYTG RK D RD FRNKR ELA+ELL+RE +VH++HA RRM 
Sbjct: 355  SRRHKARFLGYMVKCLLEAYTGHRKCDNRDSFRNKRFELASELLERELKVHVSHALRRMT 414

Query: 149  KVMQRDLDGDRTMNRIEHYLDCSIITNGLSRAFSAGGWSHPYKRAEKIS 3
            K +QRDL GDR ++ IEHYLD SI+TNGL+RAFS G W HP+K  E++S
Sbjct: 415  KALQRDLYGDRDVHPIEHYLDASIVTNGLTRAFSTGAWCHPFKWMERVS 463