BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00021553
         (767 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF66823.1|AF190655_1 poly(A)-binding protein [Nicotiana taba...    64   3e-08
ref|XP_003171756.1| splicing factor 3B subunit 4 [Arthroderma gy...    55   6e-08
ref|XP_003233445.1| splicing factor 3b subunit 4 [Trichophyton r...    55   6e-08
ref|XP_003025667.1| hypothetical protein TRV_00155 [Trichophyton...    55   6e-08
ref|XP_003017404.1| hypothetical protein ARB_04284 [Arthroderma ...    55   6e-08

>gb|AAF66823.1|AF190655_1 poly(A)-binding protein [Nicotiana tabacum]
          Length = 649

 Score = 64.3 bits (155), Expect = 3e-08
 Identities = 34/78 (43%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
 Frame = -2

Query: 349 SLGIDVRVDNLSFFVSDQYLREMFSAYGYISFCKVTRKPD-LSNGSGRVTFSNHIEAKEA 173
           S G+++ + NL   +SD+ L+E+FS YG I+ CKV R P  +S GSG V FSN  EA  A
Sbjct: 306 SQGLNLYIKNLDDSISDEKLKELFSPYGTITSCKVMRDPSGVSKGSGFVAFSNPEEASRA 365

Query: 172 IAAMHGQYIRSSQIQVSL 119
           ++ M+G+ + S  + V+L
Sbjct: 366 LSEMNGKMVVSKPLYVAL 383


>ref|XP_003171756.1| splicing factor 3B subunit 4 [Arthroderma gypseum CBS 118893]
           gi|311344099|gb|EFR03302.1| splicing factor 3B subunit 4
           [Arthroderma gypseum CBS 118893]
          Length = 382

 Score = 55.1 bits (131), Expect(2) = 6e-08
 Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 2/103 (1%)
 Frame = -2

Query: 397 KLVDLRTLSDPSQEQTSLGIDVRVDNLSFFVSDQYLREMFSAYG-YISFCKVTRKP-DLS 224
           K + +   S   Q+   +G ++ V NL   V++Q L + FS +G  IS  KV R   +LS
Sbjct: 82  KPIRVNKASADKQKAVEVGAELFVGNLDPMVTEQVLYDTFSRFGSLISLPKVARDDSNLS 141

Query: 223 NGSGRVTFSNHIEAKEAIAAMHGQYIRSSQIQVSLEGGEKGSG 95
            G G ++FSN   + +AIA M+GQY+ + +I V     + G G
Sbjct: 142 KGYGFISFSNFEASDDAIANMNGQYLMNKEISVQYAYKKDGKG 184



 Score = 28.1 bits (61), Expect(2) = 6e-08
 Identities = 16/60 (26%), Positives = 32/60 (53%)
 Frame = -3

Query: 681 DEMETSMVHVTNLDLDVTDADLYDFSRYGGQAIWAEVSKNHRTGRSLGEGYICYENHEED 502
           ++ + + V++ NLD  VTD  +++     G+ +   + K+  T    G G++ + N EED
Sbjct: 8   EQDKEATVYIGNLDERVTDKLVWELMLQAGRIVNVHLPKDRVTQTHQGYGFVEF-NSEED 66


>ref|XP_003233445.1| splicing factor 3b subunit 4 [Trichophyton rubrum CBS 118892]
           gi|326464751|gb|EGD90204.1| splicing factor 3b subunit 4
           [Trichophyton rubrum CBS 118892]
          Length = 379

 Score = 55.1 bits (131), Expect(2) = 6e-08
 Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 2/103 (1%)
 Frame = -2

Query: 397 KLVDLRTLSDPSQEQTSLGIDVRVDNLSFFVSDQYLREMFSAYG-YISFCKVTRKP-DLS 224
           K + +   S   Q+   +G ++ V NL   V++Q L + FS +G  IS  KV R   +LS
Sbjct: 82  KPIRVNKASADKQKAVEVGAELFVGNLDPMVTEQVLYDTFSRFGSLISLPKVARDDSNLS 141

Query: 223 NGSGRVTFSNHIEAKEAIAAMHGQYIRSSQIQVSLEGGEKGSG 95
            G G ++FSN   + +AIA M+GQY+ + +I V     + G G
Sbjct: 142 KGYGFISFSNFEASDDAIANMNGQYLMNKEISVQYAYKKDGKG 184



 Score = 28.1 bits (61), Expect(2) = 6e-08
 Identities = 16/60 (26%), Positives = 32/60 (53%)
 Frame = -3

Query: 681 DEMETSMVHVTNLDLDVTDADLYDFSRYGGQAIWAEVSKNHRTGRSLGEGYICYENHEED 502
           ++ + + V++ NLD  VTD  +++     G+ +   + K+  T    G G++ + N EED
Sbjct: 8   EQDKEATVYIGNLDERVTDKLVWELMLQAGRIVNVHLPKDRVTQTHQGYGFVEF-NSEED 66


>ref|XP_003025667.1| hypothetical protein TRV_00155 [Trichophyton verrucosum HKI 0517]
           gi|291189788|gb|EFE45056.1| hypothetical protein
           TRV_00155 [Trichophyton verrucosum HKI 0517]
          Length = 379

 Score = 55.1 bits (131), Expect(2) = 6e-08
 Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 2/103 (1%)
 Frame = -2

Query: 397 KLVDLRTLSDPSQEQTSLGIDVRVDNLSFFVSDQYLREMFSAYG-YISFCKVTRKP-DLS 224
           K + +   S   Q+   +G ++ V NL   V++Q L + FS +G  IS  KV R   +LS
Sbjct: 82  KPIRVNKASADKQKAVEVGAELFVGNLDPMVTEQVLYDTFSRFGSLISLPKVARDDSNLS 141

Query: 223 NGSGRVTFSNHIEAKEAIAAMHGQYIRSSQIQVSLEGGEKGSG 95
            G G ++FSN   + +AIA M+GQY+ + +I V     + G G
Sbjct: 142 KGYGFISFSNFEASDDAIANMNGQYLMNKEISVQYAYKKDGKG 184



 Score = 28.1 bits (61), Expect(2) = 6e-08
 Identities = 16/60 (26%), Positives = 32/60 (53%)
 Frame = -3

Query: 681 DEMETSMVHVTNLDLDVTDADLYDFSRYGGQAIWAEVSKNHRTGRSLGEGYICYENHEED 502
           ++ + + V++ NLD  VTD  +++     G+ +   + K+  T    G G++ + N EED
Sbjct: 8   EQDKEATVYIGNLDERVTDKLVWELMLQAGRIVNVHLPKDRVTQTHQGYGFVEF-NSEED 66


>ref|XP_003017404.1| hypothetical protein ARB_04284 [Arthroderma benhamiae CBS 112371]
           gi|291180975|gb|EFE36759.1| hypothetical protein
           ARB_04284 [Arthroderma benhamiae CBS 112371]
          Length = 379

 Score = 55.1 bits (131), Expect(2) = 6e-08
 Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 2/103 (1%)
 Frame = -2

Query: 397 KLVDLRTLSDPSQEQTSLGIDVRVDNLSFFVSDQYLREMFSAYG-YISFCKVTRKP-DLS 224
           K + +   S   Q+   +G ++ V NL   V++Q L + FS +G  IS  KV R   +LS
Sbjct: 82  KPIRVNKASADKQKAVEVGAELFVGNLDPMVTEQVLYDTFSRFGSLISLPKVARDDSNLS 141

Query: 223 NGSGRVTFSNHIEAKEAIAAMHGQYIRSSQIQVSLEGGEKGSG 95
            G G ++FSN   + +AIA M+GQY+ + +I V     + G G
Sbjct: 142 KGYGFISFSNFEASDDAIANMNGQYLMNKEISVQYAYKKDGKG 184



 Score = 28.1 bits (61), Expect(2) = 6e-08
 Identities = 16/60 (26%), Positives = 32/60 (53%)
 Frame = -3

Query: 681 DEMETSMVHVTNLDLDVTDADLYDFSRYGGQAIWAEVSKNHRTGRSLGEGYICYENHEED 502
           ++ + + V++ NLD  VTD  +++     G+ +   + K+  T    G G++ + N EED
Sbjct: 8   EQDKEATVYIGNLDERVTDKLVWELMLQAGRIVNVHLPKDRVTQTHQGYGFVEF-NSEED 66