BLASTX nr result
ID: Cnidium21_contig00021436
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cnidium21_contig00021436
(310 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002278014.2| PREDICTED: pentatricopeptide repeat-containi... 154 9e-36
ref|XP_004157939.1| PREDICTED: pentatricopeptide repeat-containi... 152 3e-35
ref|XP_004141071.1| PREDICTED: pentatricopeptide repeat-containi... 152 3e-35
ref|XP_002326124.1| predicted protein [Populus trichocarpa] gi|2... 140 1e-31
ref|XP_003550612.1| PREDICTED: pentatricopeptide repeat-containi... 137 7e-31
>ref|XP_002278014.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Vitis vinifera]
Length = 641
Score = 154 bits (388), Expect = 9e-36
Identities = 69/102 (67%), Positives = 86/102 (84%)
Frame = -1
Query: 310 PDVVSYTSVISGYCRLGEMDRASNLFDEMISREIKPNLFTFNAVIDGFGKTGDMSSALSM 131
PDVV+YTS+ISGYC+LG+M++AS LF+ MIS IKPN FTFN +I+GFGK GDM SA +M
Sbjct: 306 PDVVTYTSIISGYCKLGKMEKASILFNNMISSGIKPNAFTFNILINGFGKVGDMVSAENM 365
Query: 130 YARMLYLGCPPDVVTFTSLIDGHCRMGQVDHGLKLWNEIHTR 5
Y ML LGCPPD++TFTSLIDGHCR G+V+ LKLW+E++ R
Sbjct: 366 YEEMLLLGCPPDIITFTSLIDGHCRTGKVERSLKLWHELNAR 407
Score = 75.9 bits (185), Expect = 3e-12
Identities = 40/134 (29%), Positives = 66/134 (49%), Gaps = 35/134 (26%)
Frame = -1
Query: 310 PDVVSYTSVISGYCRLGEMDRASNLFDEMISREIKPNLFTF------------------- 188
PD++++TS+I G+CR G+++R+ L+ E+ +R + PN +TF
Sbjct: 376 PDIITFTSLIDGHCRTGKVERSLKLWHELNARNLSPNEYTFAILTNALCKENRLHEARGF 435
Query: 187 ----------------NAVIDGFGKTGDMSSALSMYARMLYLGCPPDVVTFTSLIDGHCR 56
N VIDGF K G++ A + A M C PD +T+T LI GHC
Sbjct: 436 LRDLKWRHIVAQPFMYNPVIDGFCKAGNVDEANVILAEMEEKRCKPDKITYTILIIGHCM 495
Query: 55 MGQVDHGLKLWNEI 14
G++ + ++N +
Sbjct: 496 KGRLSEAISIFNRM 509
Score = 70.5 bits (171), Expect = 1e-10
Identities = 33/99 (33%), Positives = 60/99 (60%), Gaps = 1/99 (1%)
Frame = -1
Query: 307 DVVSYTSVISGYCRLGEMDRASNLFDEMISREIKPNLFTFNAVIDGFGKTGDMSSALSMY 128
D S+ +I G CR+G++D+A LF+EM P++ T+N +I+GF + ++ +
Sbjct: 236 DSCSFNILIRGLCRIGKVDKAFELFNEMRGFGCSPDVITYNTLINGFCRVNEVDRGHDLL 295
Query: 127 ARMLYLG-CPPDVVTFTSLIDGHCRMGQVDHGLKLWNEI 14
+L PDVVT+TS+I G+C++G+++ L+N +
Sbjct: 296 KELLSKNDLSPDVVTYTSIISGYCKLGKMEKASILFNNM 334
Score = 66.2 bits (160), Expect = 3e-09
Identities = 32/90 (35%), Positives = 50/90 (55%)
Frame = -1
Query: 295 YTSVISGYCRLGEMDRASNLFDEMISREIKPNLFTFNAVIDGFGKTGDMSSALSMYARML 116
Y VI G+C+ G +D A+ + EM + KP+ T+ +I G G +S A+S++ RML
Sbjct: 451 YNPVIDGFCKAGNVDEANVILAEMEEKRCKPDKITYTILIIGHCMKGRLSEAISIFNRML 510
Query: 115 YLGCPPDVVTFTSLIDGHCRMGQVDHGLKL 26
GC PD +T TSLI + G + ++
Sbjct: 511 GTGCAPDSITMTSLISCLLKAGMPNEAYRI 540
Score = 59.3 bits (142), Expect = 3e-07
Identities = 30/97 (30%), Positives = 51/97 (52%)
Frame = -1
Query: 304 VVSYTSVISGYCRLGEMDRASNLFDEMISREIKPNLFTFNAVIDGFGKTGDMSSALSMYA 125
+V Y +++ R ++D A F E + + +FN +I G + G + A ++
Sbjct: 202 LVVYNKLLNQLVRGNQVDEAVCFFREQMGLHGPFDSCSFNILIRGLCRIGKVDKAFELFN 261
Query: 124 RMLYLGCPPDVVTFTSLIDGHCRMGQVDHGLKLWNEI 14
M GC PDV+T+ +LI+G CR+ +VD G L E+
Sbjct: 262 EMRGFGCSPDVITYNTLINGFCRVNEVDRGHDLLKEL 298
>ref|XP_004157939.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Cucumis sativus]
Length = 548
Score = 152 bits (384), Expect = 3e-35
Identities = 70/102 (68%), Positives = 84/102 (82%)
Frame = -1
Query: 310 PDVVSYTSVISGYCRLGEMDRASNLFDEMISREIKPNLFTFNAVIDGFGKTGDMSSALSM 131
PDV++YTS+ISGYC+LG+M AS LFDEM+S IKPN FTFN +IDGFGK G+M SA+ M
Sbjct: 283 PDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVM 342
Query: 130 YARMLYLGCPPDVVTFTSLIDGHCRMGQVDHGLKLWNEIHTR 5
Y +ML LGC PDVVTFTSLIDG+CR G+V+ GLKLW E+ R
Sbjct: 343 YEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVR 384
Score = 71.6 bits (174), Expect = 6e-11
Identities = 42/124 (33%), Positives = 60/124 (48%), Gaps = 35/124 (28%)
Frame = -1
Query: 310 PDVVSYTSVISGYCRLGEMDRASNLFDEMISREIKPNLFT-------------------- 191
PDVV++TS+I GYCR GE+++ L++EM R + PN++T
Sbjct: 353 PDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNF 412
Query: 190 ---------------FNAVIDGFGKTGDMSSALSMYARMLYLGCPPDVVTFTSLIDGHCR 56
+N VIDGF K G + A + A M C PD +TFT LI G+C
Sbjct: 413 LRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIGNCM 472
Query: 55 MGQV 44
G++
Sbjct: 473 KGRM 476
Score = 58.5 bits (140), Expect = 5e-07
Identities = 27/93 (29%), Positives = 51/93 (54%)
Frame = -1
Query: 295 YTSVISGYCRLGEMDRASNLFDEMISREIKPNLFTFNAVIDGFGKTGDMSSALSMYARML 116
Y ++++ + +D A LF E + P++++FN +I G + G++ A + M
Sbjct: 182 YNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQNMG 241
Query: 115 YLGCPPDVVTFTSLIDGHCRMGQVDHGLKLWNE 17
GC PD+V++ +LI+G CR+ ++ G L E
Sbjct: 242 NFGCFPDIVSYNTLINGFCRVNEISKGHDLLKE 274
Score = 58.5 bits (140), Expect = 5e-07
Identities = 28/80 (35%), Positives = 45/80 (56%)
Frame = -1
Query: 310 PDVVSYTSVISGYCRLGEMDRASNLFDEMISREIKPNLFTFNAVIDGFGKTGDMSSALSM 131
P Y VI G+C+ G++D A+ + EM ++ +P+ TF +I G G M A+S
Sbjct: 423 PKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIGNCMKGRMVEAIST 482
Query: 130 YARMLYLGCPPDVVTFTSLI 71
+ +M+ + C PD +T SLI
Sbjct: 483 FYKMIEINCVPDEITINSLI 502
>ref|XP_004141071.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Cucumis sativus]
Length = 548
Score = 152 bits (384), Expect = 3e-35
Identities = 70/102 (68%), Positives = 84/102 (82%)
Frame = -1
Query: 310 PDVVSYTSVISGYCRLGEMDRASNLFDEMISREIKPNLFTFNAVIDGFGKTGDMSSALSM 131
PDV++YTS+ISGYC+LG+M AS LFDEM+S IKPN FTFN +IDGFGK G+M SA+ M
Sbjct: 283 PDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVM 342
Query: 130 YARMLYLGCPPDVVTFTSLIDGHCRMGQVDHGLKLWNEIHTR 5
Y +ML LGC PDVVTFTSLIDG+CR G+V+ GLKLW E+ R
Sbjct: 343 YEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVR 384
Score = 71.6 bits (174), Expect = 6e-11
Identities = 42/124 (33%), Positives = 60/124 (48%), Gaps = 35/124 (28%)
Frame = -1
Query: 310 PDVVSYTSVISGYCRLGEMDRASNLFDEMISREIKPNLFT-------------------- 191
PDVV++TS+I GYCR GE+++ L++EM R + PN++T
Sbjct: 353 PDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNF 412
Query: 190 ---------------FNAVIDGFGKTGDMSSALSMYARMLYLGCPPDVVTFTSLIDGHCR 56
+N VIDGF K G + A + A M C PD +TFT LI G+C
Sbjct: 413 LRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIGNCM 472
Query: 55 MGQV 44
G++
Sbjct: 473 KGRM 476
Score = 58.5 bits (140), Expect = 5e-07
Identities = 27/93 (29%), Positives = 51/93 (54%)
Frame = -1
Query: 295 YTSVISGYCRLGEMDRASNLFDEMISREIKPNLFTFNAVIDGFGKTGDMSSALSMYARML 116
Y ++++ + +D A LF E + P++++FN +I G + G++ A + M
Sbjct: 182 YNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQNMG 241
Query: 115 YLGCPPDVVTFTSLIDGHCRMGQVDHGLKLWNE 17
GC PD+V++ +LI+G CR+ ++ G L E
Sbjct: 242 NFGCFPDIVSYNTLINGFCRVNEISKGHDLLKE 274
Score = 58.5 bits (140), Expect = 5e-07
Identities = 28/80 (35%), Positives = 45/80 (56%)
Frame = -1
Query: 310 PDVVSYTSVISGYCRLGEMDRASNLFDEMISREIKPNLFTFNAVIDGFGKTGDMSSALSM 131
P Y VI G+C+ G++D A+ + EM ++ +P+ TF +I G G M A+S
Sbjct: 423 PKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIGNCMKGRMVEAIST 482
Query: 130 YARMLYLGCPPDVVTFTSLI 71
+ +M+ + C PD +T SLI
Sbjct: 483 FYKMIEINCVPDEITINSLI 502
>ref|XP_002326124.1| predicted protein [Populus trichocarpa] gi|222833317|gb|EEE71794.1|
predicted protein [Populus trichocarpa]
Length = 512
Score = 140 bits (353), Expect = 1e-31
Identities = 62/102 (60%), Positives = 81/102 (79%)
Frame = -1
Query: 310 PDVVSYTSVISGYCRLGEMDRASNLFDEMISREIKPNLFTFNAVIDGFGKTGDMSSALSM 131
PD+V+YTS+ISG+C+ G+M ASNLF+EM+ I+PN+ TFN +IDGFGK G+++ A +M
Sbjct: 247 PDIVTYTSIISGFCKSGKMKEASNLFEEMMRSGIQPNVITFNVLIDGFGKIGNIAEAEAM 306
Query: 130 YARMLYLGCPPDVVTFTSLIDGHCRMGQVDHGLKLWNEIHTR 5
Y +M Y C DVVTFTSLIDG+CR GQV+HGLK WN + TR
Sbjct: 307 YRKMAYFDCSADVVTFTSLIDGYCRAGQVNHGLKFWNVMKTR 348
Score = 66.6 bits (161), Expect = 2e-09
Identities = 32/97 (32%), Positives = 55/97 (56%)
Frame = -1
Query: 295 YTSVISGYCRLGEMDRASNLFDEMISREIKPNLFTFNAVIDGFGKTGDMSSALSMYARML 116
Y +++S + ++ A LF E + + P+ +TFN +I G + G + A ++ M
Sbjct: 146 YNNLLSVLVKQNQVHEAIYLFKEYLVMQSPPDTWTFNILIRGLCRVGGVDRAFEVFKDME 205
Query: 115 YLGCPPDVVTFTSLIDGHCRMGQVDHGLKLWNEIHTR 5
GC PDVVT+ +LI+G C+ +V G +L+ EI +R
Sbjct: 206 SFGCLPDVVTYNTLINGLCKANEVQRGCELFKEIQSR 242
Score = 65.9 bits (159), Expect = 3e-09
Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 35/133 (26%)
Frame = -1
Query: 307 DVVSYTSVISGYCRLGEMDRASNLFDEMISREIKPNLFTF-------------------- 188
DVV++TS+I GYCR G+++ ++ M +R + P ++T+
Sbjct: 318 DVVTFTSLIDGYCRAGQVNHGLKFWNVMKTRNVSPTVYTYAVLINALCKENRLNEARDFL 377
Query: 187 ---------------NAVIDGFGKTGDMSSALSMYARMLYLGCPPDVVTFTSLIDGHCRM 53
N VIDGF K G++ + M C PD VTFT LI GHC
Sbjct: 378 GQIKNSSIIPKPFMYNPVIDGFCKAGNVDEGNVILKEMEEKRCDPDKVTFTILIIGHCVK 437
Query: 52 GQVDHGLKLWNEI 14
G++ + ++N +
Sbjct: 438 GRMFEAINIFNRM 450
Score = 56.2 bits (134), Expect = 3e-06
Identities = 29/95 (30%), Positives = 46/95 (48%)
Frame = -1
Query: 310 PDVVSYTSVISGYCRLGEMDRASNLFDEMISREIKPNLFTFNAVIDGFGKTGDMSSALSM 131
P Y VI G+C+ G +D + + EM + P+ TF +I G G M A+++
Sbjct: 387 PKPFMYNPVIDGFCKAGNVDEGNVILKEMEEKRCDPDKVTFTILIIGHCVKGRMFEAINI 446
Query: 130 YARMLYLGCPPDVVTFTSLIDGHCRMGQVDHGLKL 26
+ RML C PD +T SLI + G + ++
Sbjct: 447 FNRMLATRCAPDNITVNSLISCLLKAGMPNEAYRI 481
>ref|XP_003550612.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Glycine max]
Length = 544
Score = 137 bits (346), Expect = 7e-31
Identities = 62/102 (60%), Positives = 83/102 (81%)
Frame = -1
Query: 310 PDVVSYTSVISGYCRLGEMDRASNLFDEMISREIKPNLFTFNAVIDGFGKTGDMSSALSM 131
P+VVSYT+VISGYCRL +MD AS+LF EM+ KPN+FTF+A++DGF K GDM+SAL M
Sbjct: 282 PNVVSYTTVISGYCRLSKMDEASSLFYEMVRSGTKPNVFTFSALVDGFVKAGDMASALGM 341
Query: 130 YARMLYLGCPPDVVTFTSLIDGHCRMGQVDHGLKLWNEIHTR 5
+ ++L+ GC P+V+T TSLI+G+CR G V+HGL LW E++ R
Sbjct: 342 HKKILFHGCAPNVITLTSLINGYCRAGWVNHGLDLWREMNAR 383
Score = 63.5 bits (153), Expect = 2e-08
Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 35/131 (26%)
Frame = -1
Query: 310 PDVVSYTSVISGYCRLGEMDRASNLFDEMISREIKPNLFT-------------------- 191
P+V++ TS+I+GYCR G ++ +L+ EM +R I NL+T
Sbjct: 352 PNVITLTSLINGYCRAGWVNHGLDLWREMNARNIPANLYTYSVLISALCKSNRLQEARNL 411
Query: 190 ---------------FNAVIDGFGKTGDMSSALSMYARMLYLGCPPDVVTFTSLIDGHCR 56
+N VIDG+ K+G++ A ++ A M C PD +TFT LI GHC
Sbjct: 412 LRILKQSDIVPLAFVYNPVIDGYCKSGNIDEANAIVAEM-EEKCKPDKLTFTILIIGHCM 470
Query: 55 MGQVDHGLKLW 23
G+ + ++
Sbjct: 471 KGRTPEAIGIF 481
Score = 62.8 bits (151), Expect = 3e-08
Identities = 33/98 (33%), Positives = 50/98 (51%)
Frame = -1
Query: 307 DVVSYTSVISGYCRLGEMDRASNLFDEMISREIKPNLFTFNAVIDGFGKTGDMSSALSMY 128
DV+ Y + ++ + +D A LF E++ + FTFN +I G GD+ A +
Sbjct: 177 DVIVYNNFLNILIKHNRLDDAICLFRELMRSHSCLDAFTFNILIRGLCTAGDVDEAFELL 236
Query: 127 ARMLYLGCPPDVVTFTSLIDGHCRMGQVDHGLKLWNEI 14
M GC PD+VT+ L+ G CR+ QVD L E+
Sbjct: 237 GDMGSFGCSPDIVTYNILLHGLCRIDQVDRARDLLEEV 274