BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00021419
         (1600 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270186.1| PREDICTED: uncharacterized RNA pseudouridine...   510   e-142
ref|XP_002311995.1| predicted protein [Populus trichocarpa] gi|2...   498   e-138
ref|XP_004140075.1| PREDICTED: uncharacterized RNA pseudouridine...   495   e-137
ref|XP_002879786.1| pseudouridine synthase family protein [Arabi...   484   e-134
ref|NP_181447.2| suppressor of variegation1 causing pseudouridin...   480   e-133

>ref|XP_002270186.1| PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464 isoform
            1 [Vitis vinifera]
          Length = 393

 Score =  510 bits (1313), Expect = e-142
 Identities = 261/386 (67%), Positives = 306/386 (79%), Gaps = 7/386 (1%)
 Frame = +2

Query: 8    SLHHLPRPFILKSRYLHTLITCS-------SSNFNITFAXXXXXXXXXXNQHSSPQDFAQ 166
            S  HL RP + +  +    +  S       S+ FNI+FA           +  +P+  ++
Sbjct: 20   SSFHLSRPSLARRHFRTIPVRSSISPPSTTSAEFNISFAP----------KSKNPKPQSE 69

Query: 167  QLYIPWIVRDENGNLTLQSTPPARLLHAISDAKTGSPVSXXXXXXXXXQEGLSTPEPKYS 346
             L IPWIVRDENGNL +QSTPP R L  ++ AK  S            +      EPKYS
Sbjct: 70   TLLIPWIVRDENGNLRVQSTPPERYLQDMAKAKALSAKKKKKKEESTARA--VAVEPKYS 127

Query: 347  KAARRFYNDNFRDPPQRLSKVLAAAGVASRRSSEQLVFQGKVTVNGSVCIAPQTKVDPAR 526
            KAARRFYN+NFRDPPQRLSKVLAAAGVASRR+SE+L+F+G+VTVNGSVC  PQT+VDPAR
Sbjct: 128  KAARRFYNENFRDPPQRLSKVLAAAGVASRRNSEELIFEGRVTVNGSVCNTPQTRVDPAR 187

Query: 527  DIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGEKETKSVISLFDDYLKSWDKRNAGQPK 706
            D+IYVNGNRLPKKLPPKVYLALNKPKGYICSSGEKE+KSV+ LFDDYLKSW+K+N G PK
Sbjct: 188  DMIYVNGNRLPKKLPPKVYLALNKPKGYICSSGEKESKSVLCLFDDYLKSWNKQNPGVPK 247

Query: 707  PRLFTVGRLDVATSGLIIVTNDGEFAQQISHPSSSLSKEYIATIDGAVNKRHLVAISEGT 886
            PR+FTVGRLDVAT+GLII+TNDG+FAQ++SHPSS LSKEYIATIDG VNKRHL+AISEGT
Sbjct: 248  PRIFTVGRLDVATTGLIILTNDGDFAQKLSHPSSKLSKEYIATIDGVVNKRHLIAISEGT 307

Query: 887  VIDGVHCTPDAVELLPQQPDISRVRIRIVVHEGRNHEVRELVKNAGLNIYALKRVRIGAF 1066
            VI+GVHCTPD+VELLP QP+IS+ R+R+VVHEGRNHEVRELVK+AGL I++LKR+RIG F
Sbjct: 308  VIEGVHCTPDSVELLPPQPNISKPRLRVVVHEGRNHEVRELVKSAGLQIHSLKRIRIGGF 367

Query: 1067 RLPPDLILGKHMELKQTHLKALGWKS 1144
            RLP DL  GKH+ELKQ  LKALGWKS
Sbjct: 368  RLPSDLGHGKHVELKQGDLKALGWKS 393


>ref|XP_002311995.1| predicted protein [Populus trichocarpa] gi|222851815|gb|EEE89362.1|
            predicted protein [Populus trichocarpa]
          Length = 397

 Score =  498 bits (1281), Expect = e-138
 Identities = 264/389 (67%), Positives = 294/389 (75%), Gaps = 12/389 (3%)
 Frame = +2

Query: 11   LHHL------PRPFILKSRYLHTLITCSSSNFNITFAXXXXXXXXXXNQHSSPQDFAQ-- 166
            LHH       P   +L      T IT +S  FNITFA          N  +     +   
Sbjct: 10   LHHQLTFFRKPSLSLLNKSIRPTRIT-ASLEFNITFAPPKPKPKLPANLQTDAASLSLPP 68

Query: 167  -QLYIPWIVRDENGNLTLQSTPPARLLHAISDAKTGSPVSXXXXXXXXXQEGLSTP---E 334
             QL+IPWIVR E+GNL LQS PPARL+HAI+DAKT  P              +      E
Sbjct: 69   GQLFIPWIVRGEDGNLKLQSNPPARLIHAIADAKT-QPKKKKDKVKKESSGNVKAKLEAE 127

Query: 335  PKYSKAARRFYNDNFRDPPQRLSKVLAAAGVASRRSSEQLVFQGKVTVNGSVCIAPQTKV 514
            P  SKAARRFYN+NFRD  QRLSKVLAAAGVASRRSSE L+F+GKVTVNGSVC  PQT+V
Sbjct: 128  PTRSKAARRFYNENFRDQAQRLSKVLAAAGVASRRSSEALIFEGKVTVNGSVCNTPQTRV 187

Query: 515  DPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGEKETKSVISLFDDYLKSWDKRNA 694
            DP RD IYVNGNRLPKKLPPK+Y+ALNKPKGYICS GEKE+KSV+ L DDY +SWDKRN 
Sbjct: 188  DPGRDSIYVNGNRLPKKLPPKIYIALNKPKGYICSLGEKESKSVMCLLDDYFQSWDKRNP 247

Query: 695  GQPKPRLFTVGRLDVATSGLIIVTNDGEFAQQISHPSSSLSKEYIATIDGAVNKRHLVAI 874
            G PKPRLFTVGRLDVAT+GLIIVTNDG+FAQQI+HPSS+LSKEYIAT+DG V+KRHL A+
Sbjct: 248  GLPKPRLFTVGRLDVATTGLIIVTNDGDFAQQIAHPSSNLSKEYIATVDGVVSKRHLFAV 307

Query: 875  SEGTVIDGVHCTPDAVELLPQQPDISRVRIRIVVHEGRNHEVRELVKNAGLNIYALKRVR 1054
            SEGTVI+GV C PD+VELLPQQPD  R R+RIVVHEGRNHEVRELVKNAGL I++LKRVR
Sbjct: 308  SEGTVIEGVRCVPDSVELLPQQPDRPRPRLRIVVHEGRNHEVRELVKNAGLEIHSLKRVR 367

Query: 1055 IGAFRLPPDLILGKHMELKQTHLKALGWK 1141
            IG FRLP DL LGKH ELKQT LK LGWK
Sbjct: 368  IGGFRLPSDLGLGKHAELKQTDLKTLGWK 396


>ref|XP_004140075.1| PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464-like
            [Cucumis sativus] gi|449490423|ref|XP_004158601.1|
            PREDICTED: uncharacterized RNA pseudouridine synthase
            aq_1464-like [Cucumis sativus]
          Length = 398

 Score =  495 bits (1274), Expect = e-137
 Identities = 259/371 (69%), Positives = 292/371 (78%), Gaps = 14/371 (3%)
 Frame = +2

Query: 74   SSSNFNITFAXXXXXXXXXXNQHSSPQDFAQ-----QLYIPWIVRDENGNLTLQSTPPAR 238
            SS  FNITFA          ++   P  F       QL+IPWIVR E+GNL LQS PP R
Sbjct: 46   SSLEFNITFAPPKPKPK---SEVEDPFQFIDRNSGGQLFIPWIVRGEDGNLKLQSHPPTR 102

Query: 239  LLHAISDAKT---------GSPVSXXXXXXXXXQEGLSTPEPKYSKAARRFYNDNFRDPP 391
             LH++S+ +T         G P+               T  PK+SKAARRFYN+N R+  
Sbjct: 103  FLHSVSEDETKPKKKKVSAGKPI---------------TEPPKHSKAARRFYNENIRESS 147

Query: 392  QRLSKVLAAAGVASRRSSEQLVFQGKVTVNGSVCIAPQTKVDPARDIIYVNGNRLPKKLP 571
            QRLSKVLAAAGVASRRSSE+L+F G+VTVNGSVC  PQT+VDPARDIIYVNGNRLPKKLP
Sbjct: 148  QRLSKVLAAAGVASRRSSEELIFGGRVTVNGSVCNTPQTRVDPARDIIYVNGNRLPKKLP 207

Query: 572  PKVYLALNKPKGYICSSGEKETKSVISLFDDYLKSWDKRNAGQPKPRLFTVGRLDVATSG 751
            PKVYLALNKPKGYICSSG+KE+KSVISLFDDYLKSWDK   GQPKPRLFTVGRLDVAT+G
Sbjct: 208  PKVYLALNKPKGYICSSGKKESKSVISLFDDYLKSWDKTYPGQPKPRLFTVGRLDVATTG 267

Query: 752  LIIVTNDGEFAQQISHPSSSLSKEYIATIDGAVNKRHLVAISEGTVIDGVHCTPDAVELL 931
            LIIVTNDG+FAQ ISHPSS LSKEYIA IDG V+K++L+AISEGT+IDGVHCTPD+VELL
Sbjct: 268  LIIVTNDGDFAQGISHPSSGLSKEYIAAIDGTVSKQNLIAISEGTIIDGVHCTPDSVELL 327

Query: 932  PQQPDISRVRIRIVVHEGRNHEVRELVKNAGLNIYALKRVRIGAFRLPPDLILGKHMELK 1111
            P+QPDIS+ R+RIVVHEGRNHEVRELVK AGL IY+LKRVRIG FRLP DL LG + ELK
Sbjct: 328  PRQPDISKSRLRIVVHEGRNHEVRELVKAAGLEIYSLKRVRIGGFRLPSDLGLGSYTELK 387

Query: 1112 QTHLKALGWKS 1144
            Q+ LKA+GWKS
Sbjct: 388  QSELKAIGWKS 398


>ref|XP_002879786.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp.
            lyrata] gi|297325625|gb|EFH56045.1| pseudouridine
            synthase family protein [Arabidopsis lyrata subsp.
            lyrata]
          Length = 412

 Score =  484 bits (1246), Expect = e-134
 Identities = 239/343 (69%), Positives = 282/343 (82%), Gaps = 16/343 (4%)
 Frame = +2

Query: 164  QQLYIPWIVRDENGNLTLQSTPPARLLHAIS-DAKTGSPVSXXXXXXXXXQEGLSTP--- 331
            QQL+IPWIVR ++G L LQS PPARL+H ++ DA T +P           Q   S+    
Sbjct: 70   QQLFIPWIVRGDDGTLKLQSQPPARLIHNLAIDATTQNPKKKDKPKKKQPQATSSSASAT 129

Query: 332  ------------EPKYSKAARRFYNDNFRDPPQRLSKVLAAAGVASRRSSEQLVFQGKVT 475
                        +PK SKAARRFYN+NF++PPQRLSKVLAAAGVASRR+SE+L+F GKVT
Sbjct: 130  ASASSPASHSEVKPKLSKAARRFYNENFKEPPQRLSKVLAAAGVASRRTSEELIFDGKVT 189

Query: 476  VNGSVCIAPQTKVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGEKETKSVISL 655
            VNG +C  PQT+VDP+RDIIYVNGNR+PKKLPPKVY ALNKPKGYICSSGEKE KSVISL
Sbjct: 190  VNGILCNTPQTRVDPSRDIIYVNGNRIPKKLPPKVYFALNKPKGYICSSGEKEIKSVISL 249

Query: 656  FDDYLKSWDKRNAGQPKPRLFTVGRLDVATSGLIIVTNDGEFAQQISHPSSSLSKEYIAT 835
            FD+YL SWDKRN G PKPRLFTVGRLDVAT+GLI+VTNDG+FAQ++SHPSSSL KEYI T
Sbjct: 250  FDEYLSSWDKRNPGTPKPRLFTVGRLDVATTGLIVVTNDGDFAQKLSHPSSSLPKEYITT 309

Query: 836  IDGAVNKRHLVAISEGTVIDGVHCTPDAVELLPQQPDISRVRIRIVVHEGRNHEVRELVK 1015
            + G ++KRHL+AISEGT+++GVHC PD+VEL+P+Q DI R R+RIVVHEGRNHEVRELVK
Sbjct: 310  VVGDIHKRHLMAISEGTIVEGVHCVPDSVELMPKQHDIPRARLRIVVHEGRNHEVRELVK 369

Query: 1016 NAGLNIYALKRVRIGAFRLPPDLILGKHMELKQTHLKALGWKS 1144
            NAGL +++LKRVRIG FRLP DL LGKH+ELKQ+ LKA+GWK+
Sbjct: 370  NAGLEVHSLKRVRIGGFRLPSDLGLGKHVELKQSELKAMGWKN 412


>ref|NP_181447.2| suppressor of variegation1 causing pseudouridine synthase-like
            protein [Arabidopsis thaliana] gi|21617894|gb|AAM66944.1|
            unknown [Arabidopsis thaliana]
            gi|26450440|dbj|BAC42334.1| unknown protein [Arabidopsis
            thaliana] gi|330254545|gb|AEC09639.1| suppressor of
            variegation1 causing pseudouridine synthase-like protein
            [Arabidopsis thaliana]
          Length = 410

 Score =  480 bits (1236), Expect = e-133
 Identities = 238/342 (69%), Positives = 280/342 (81%), Gaps = 15/342 (4%)
 Frame = +2

Query: 164  QQLYIPWIVRDENGNLTLQSTPPARLLHAIS-DAKTGSPVSXXXXXXXXXQEGLSTP--- 331
            QQL+IPWIVR ++G L LQS PPARL+H ++ DA T +P           Q   S+    
Sbjct: 69   QQLFIPWIVRSDDGTLKLQSQPPARLIHNLAIDATTQNPKKKDKSKKKQPQATSSSSATT 128

Query: 332  -----------EPKYSKAARRFYNDNFRDPPQRLSKVLAAAGVASRRSSEQLVFQGKVTV 478
                       +PK SKAARRFYN+NF++ PQRLSKVLAAAGVASRR+SE+L+F GKVTV
Sbjct: 129  TASSPASHSEVKPKLSKAARRFYNENFKEQPQRLSKVLAAAGVASRRTSEELIFDGKVTV 188

Query: 479  NGSVCIAPQTKVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGEKETKSVISLF 658
            NG +C  PQT+VDP+RDIIYVNGNR+PKKLPPKVY ALNKPKGYICSSGEKE KS ISLF
Sbjct: 189  NGILCNTPQTRVDPSRDIIYVNGNRIPKKLPPKVYFALNKPKGYICSSGEKEIKSAISLF 248

Query: 659  DDYLKSWDKRNAGQPKPRLFTVGRLDVATSGLIIVTNDGEFAQQISHPSSSLSKEYIATI 838
            D+YL SWDKRN G PKPRLFTVGRLDVAT+GLI+VTNDG+FAQ++SHPSSSL KEYI T+
Sbjct: 249  DEYLSSWDKRNPGTPKPRLFTVGRLDVATTGLIVVTNDGDFAQKLSHPSSSLPKEYITTV 308

Query: 839  DGAVNKRHLVAISEGTVIDGVHCTPDAVELLPQQPDISRVRIRIVVHEGRNHEVRELVKN 1018
             G ++KRHL+AISEGT+++GVHC PD+VEL+P+Q DI R R+RIVVHEGRNHEVRELVKN
Sbjct: 309  VGDIHKRHLMAISEGTMVEGVHCVPDSVELMPKQHDIPRARLRIVVHEGRNHEVRELVKN 368

Query: 1019 AGLNIYALKRVRIGAFRLPPDLILGKHMELKQTHLKALGWKS 1144
            AGL +++LKRVRIG FRLP DL LGKH+ELKQ+ LKALGWK+
Sbjct: 369  AGLEVHSLKRVRIGGFRLPSDLGLGKHVELKQSELKALGWKN 410