BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00021146
         (891 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACF06506.1| RNA polymerase [Elaeis guineensis]                     162   7e-38
dbj|BAD54456.1| putative RNA polymerase I, II and III 16.5 kDa s...   154   3e-35
gb|EAZ02226.1| hypothetical protein OsI_24321 [Oryza sativa Indi...   154   3e-35
ref|XP_002274208.1| PREDICTED: DNA-directed RNA polymerases I, I...   152   1e-34
ref|XP_002274171.1| PREDICTED: DNA-directed RNA polymerases I, I...   152   1e-34

>gb|ACF06506.1| RNA polymerase [Elaeis guineensis]
          Length = 145

 Score =  162 bits (411), Expect = 7e-38
 Identities = 81/145 (55%), Positives = 105/145 (72%)
 Frame = -2

Query: 845 MINFYFDDIIKVDRLDVDGKKYDKVSRMEARSEQLNMQLQLDVNSELCPVRVGDKFRMVL 666
           M+   F+DI  + R+D DGKK+DKVSR+EARSEQ +M +QLDVN+E+ P+ VGDKF MVL
Sbjct: 1   MVELLFEDIFTLTRIDPDGKKFDKVSRIEARSEQFDMYMQLDVNTEIYPLHVGDKFTMVL 60

Query: 665 ADTLNEDGSAFTSLLPKGKEKSLVDQFEYVMHGLLYKISDDESGANPEKVACVSFGGLQL 486
           A TL+ DG+  +    +G+ KSL D+FEYVMHG LYKIS++ SG N +     SFGGL +
Sbjct: 61  APTLSLDGTPDSGYYMQGQRKSLADKFEYVMHGKLYKISEESSGPNVKVEIYASFGGLLM 120

Query: 485 MLKGDATKMERFELHEKYFLCMRKV 411
           MLKGD +    FEL ++ FL MRKV
Sbjct: 121 MLKGDPSNATNFELDQRLFLLMRKV 145


>dbj|BAD54456.1| putative RNA polymerase I, II and III 16.5 kDa subunit [Oryza
           sativa Japonica Group]
          Length = 396

 Score =  154 bits (388), Expect = 3e-35
 Identities = 79/147 (53%), Positives = 102/147 (69%), Gaps = 1/147 (0%)
 Frame = -2

Query: 848 RMINFYFDDIIKVDRLDVDGKKYDKVSRMEARSEQLNMQLQLDVNSELCPVRVGDKFRMV 669
           +M+   F+DI  V RLD DGKK+D+VSR+EARSEQ +M +QLDV +E+ P+R GD+F MV
Sbjct: 250 KMVEHLFEDIFTVTRLDPDGKKFDRVSRIEARSEQFDMYMQLDVATEVYPMRAGDRFTMV 309

Query: 668 LADTLNEDGSAFTSLLPKGKEKSLVDQFEYVMHGLLYKISDDESGANPEKVAC-VSFGGL 492
           LA TLN DG+  T    +   K+L D+F+YVMHG LYKIS+D S     KV    SFGGL
Sbjct: 310 LAPTLNLDGTPDTGFYTQAGRKTLADKFDYVMHGKLYKISEDSSSGQATKVEIYASFGGL 369

Query: 491 QLMLKGDATKMERFELHEKYFLCMRKV 411
            +MLKGD +    FEL ++ FL +RKV
Sbjct: 370 LMMLKGDPSSAASFELDQRLFLLIRKV 396


>gb|EAZ02226.1| hypothetical protein OsI_24321 [Oryza sativa Indica Group]
           gi|125598367|gb|EAZ38147.1| hypothetical protein
           OsJ_22498 [Oryza sativa Japonica Group]
          Length = 191

 Score =  154 bits (388), Expect = 3e-35
 Identities = 79/147 (53%), Positives = 102/147 (69%), Gaps = 1/147 (0%)
 Frame = -2

Query: 848 RMINFYFDDIIKVDRLDVDGKKYDKVSRMEARSEQLNMQLQLDVNSELCPVRVGDKFRMV 669
           +M+   F+DI  V RLD DGKK+D+VSR+EARSEQ +M +QLDV +E+ P+R GD+F MV
Sbjct: 45  KMVEHLFEDIFTVTRLDPDGKKFDRVSRIEARSEQFDMYMQLDVATEVYPMRAGDRFTMV 104

Query: 668 LADTLNEDGSAFTSLLPKGKEKSLVDQFEYVMHGLLYKISDDESGANPEKVAC-VSFGGL 492
           LA TLN DG+  T    +   K+L D+F+YVMHG LYKIS+D S     KV    SFGGL
Sbjct: 105 LAPTLNLDGTPDTGFYTQAGRKTLADKFDYVMHGKLYKISEDSSSGQATKVEIYASFGGL 164

Query: 491 QLMLKGDATKMERFELHEKYFLCMRKV 411
            +MLKGD +    FEL ++ FL +RKV
Sbjct: 165 LMMLKGDPSSAASFELDQRLFLLIRKV 191


>ref|XP_002274208.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC3 [Vitis vinifera] gi|296084254|emb|CBI24642.3|
           unnamed protein product [Vitis vinifera]
          Length = 145

 Score =  152 bits (384), Expect = 1e-34
 Identities = 73/145 (50%), Positives = 107/145 (73%)
 Frame = -2

Query: 845 MINFYFDDIIKVDRLDVDGKKYDKVSRMEARSEQLNMQLQLDVNSELCPVRVGDKFRMVL 666
           M+  +FDDI  VD  D  GKK+DKVSR+EA SEQ +M +QLDVN E  P++ G+KFRMVL
Sbjct: 1   MVETFFDDIFVVDGQDPGGKKFDKVSRIEASSEQYDMFMQLDVNIEAYPIQAGEKFRMVL 60

Query: 665 ADTLNEDGSAFTSLLPKGKEKSLVDQFEYVMHGLLYKISDDESGANPEKVACVSFGGLQL 486
           A TL+ DG+  T    +G++KSL D+F+YVM+G++YK+S++ SG + + V   SFGGL +
Sbjct: 61  APTLHLDGADVTDYFTQGEQKSLADKFDYVMYGIIYKVSNEGSGPDVKGVIYASFGGLLM 120

Query: 485 MLKGDATKMERFELHEKYFLCMRKV 411
           +LKGD + + + E++++ FL M+KV
Sbjct: 121 ILKGDPSNLNKLEVNKRLFLLMKKV 145


>ref|XP_002274171.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           rpabc3 isoform 1 [Vitis vinifera]
           gi|359478220|ref|XP_003632088.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit rpabc3 isoform 2
           [Vitis vinifera] gi|296084252|emb|CBI24640.3| unnamed
           protein product [Vitis vinifera]
          Length = 145

 Score =  152 bits (383), Expect = 1e-34
 Identities = 78/145 (53%), Positives = 102/145 (70%)
 Frame = -2

Query: 845 MINFYFDDIIKVDRLDVDGKKYDKVSRMEARSEQLNMQLQLDVNSELCPVRVGDKFRMVL 666
           M N  F DI KV ++D DGKK+DKVSR+EA+SEQL+M +QLDVN+E+ P+  G+KF M L
Sbjct: 1   MENTLFGDIFKVIQIDPDGKKFDKVSRIEAQSEQLDMYMQLDVNTEIYPMHAGEKFAMSL 60

Query: 665 ADTLNEDGSAFTSLLPKGKEKSLVDQFEYVMHGLLYKISDDESGANPEKVACVSFGGLQL 486
           A TL+ DG+  T    +   KSL D+FEYVMHG LYKIS++ SG N + V  VSFGGL +
Sbjct: 61  ASTLDLDGTPDTGYYTQAGRKSLADKFEYVMHGKLYKISEEGSGPNVKGVIYVSFGGLLM 120

Query: 485 MLKGDATKMERFELHEKYFLCMRKV 411
           ML GD     + +L ++ FL +RKV
Sbjct: 121 MLSGDPANTAKLDLDQRVFLLIRKV 145