BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00020366
         (1273 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAE47589.1| photosystem II protein D2 [Lactuca sativa]            508   e-141
ref|YP_004072457.1| PSII D2 protein [Corynocarpus laevigata] gi|...   504   e-140
gb|AAS46043.1| photosystem II protein D2 [Oryza sativa Indica Gr...   503   e-140
ref|YP_003934296.1| photosystem II protein D2 [Monsonia speciosa...   503   e-140
gb|AFB70740.1| photosystem II D2 protein, partial (chloroplast) ...   503   e-140

>dbj|BAE47589.1| photosystem II protein D2 [Lactuca sativa]
          Length = 359

 Score =  508 bits (1309), Expect = e-141
 Identities = 244/258 (94%), Positives = 246/258 (95%)
 Frame = -2

Query: 774 LNRRITMTIALGKFTKDEKDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTT 595
           +NRRITMTIALGK TKDE DLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFA+GGWFTGTT
Sbjct: 1   MNRRITMTIALGKVTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFTGTT 60

Query: 594 FVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTF 415
           FVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTF
Sbjct: 61  FVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTF 120

Query: 414 VALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSF 235
           VALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSF
Sbjct: 121 VALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSF 180

Query: 234 GVAAIFRFILFFQGFHNWTLNPFHMMXXXXXXXXXXLCAIHGATVENTLFEDGDGANTFR 55
           GVAAIFRFILFFQGFHNWTLNPFHMM          LCAIHGATVENTLFEDGDGANTFR
Sbjct: 181 GVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFR 240

Query: 54  AFNPTQAEETYSMVTANR 1
           AFNPTQAEETYSMVTANR
Sbjct: 241 AFNPTQAEETYSMVTANR 258


>ref|YP_004072457.1| PSII D2 protein [Corynocarpus laevigata]
           gi|309252885|gb|ADO60305.1| PSII D2 protein
           [Corynocarpus laevigata] gi|377581190|gb|AFB70733.1|
           photosystem II D2 protein, partial (chloroplast)
           [Anredera baselloides] gi|377581194|gb|AFB70735.1|
           photosystem II D2 protein, partial (chloroplast)
           [Didierea madagascariensis] gi|408899270|gb|AFU94469.1|
           PsbD, partial (chloroplast) [Viola pubescens]
          Length = 353

 Score =  504 bits (1297), Expect = e-140
 Identities = 242/252 (96%), Positives = 242/252 (96%)
 Frame = -2

Query: 756 MTIALGKFTKDEKDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 577
           MTIALGKFTKDEKDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY
Sbjct: 1   MTIALGKFTKDEKDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 60

Query: 576 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGA 397
           THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGA
Sbjct: 61  THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGA 120

Query: 396 FGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF 217
           FGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF
Sbjct: 121 FGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF 180

Query: 216 RFILFFQGFHNWTLNPFHMMXXXXXXXXXXLCAIHGATVENTLFEDGDGANTFRAFNPTQ 37
           RFILFFQGFHNWTLNPFHMM          LCAIHGATVENTLFEDGDGANTFRAFNPTQ
Sbjct: 181 RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ 240

Query: 36  AEETYSMVTANR 1
           AEETYSMVTANR
Sbjct: 241 AEETYSMVTANR 252


>gb|AAS46043.1| photosystem II protein D2 [Oryza sativa Indica Group]
           gi|42795542|gb|AAS46108.1| photosystem II protein D2
           [Oryza sativa Japonica Group] gi|42795606|gb|AAS46171.1|
           photosystem II protein D2 [Oryza sativa Japonica Group]
           gi|290790561|gb|ADD62821.1| photosystem II protein D2
           [Oryza sativa Japonica Group]
           gi|290790630|gb|ADD62889.1| photosystem II protein D2
           [Oryza meridionalis] gi|290790699|gb|ADD62957.1|
           photosystem II protein D2 [Oryza australiensis]
           gi|290790836|gb|ADD63092.1| photosystem II protein D2
           [Microlaena stipoides]
          Length = 359

 Score =  503 bits (1296), Expect = e-140
 Identities = 241/258 (93%), Positives = 245/258 (94%)
 Frame = -2

Query: 774 LNRRITMTIALGKFTKDEKDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTT 595
           +NRRITMTIALG+ TK+E DLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTT
Sbjct: 1   MNRRITMTIALGRVTKEENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTT 60

Query: 594 FVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTF 415
           FVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTF
Sbjct: 61  FVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTF 120

Query: 414 VALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSF 235
           VALHGAF LIGFMLRQFELARSVQLRPYNAI+FSGPIAVFVSVFLIYPLGQSGWFFAPSF
Sbjct: 121 VALHGAFALIGFMLRQFELARSVQLRPYNAISFSGPIAVFVSVFLIYPLGQSGWFFAPSF 180

Query: 234 GVAAIFRFILFFQGFHNWTLNPFHMMXXXXXXXXXXLCAIHGATVENTLFEDGDGANTFR 55
           GVAAIFRFILFFQGFHNWTLNPFHMM          LCAIHGATVENTLFEDGDGANTFR
Sbjct: 181 GVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFR 240

Query: 54  AFNPTQAEETYSMVTANR 1
           AFNPTQAEETYSMVTANR
Sbjct: 241 AFNPTQAEETYSMVTANR 258


>ref|YP_003934296.1| photosystem II protein D2 [Monsonia speciosa]
           gi|197132044|gb|ACH47540.1| photosystem II protein D2
           [Monsonia speciosa] gi|197132046|gb|ACH47541.1|
           photosystem II protein D2 [Sarcocaulon vanderietiae]
           gi|300069311|gb|ADJ66431.1| photosystem II protein D2
           [Monsonia speciosa]
          Length = 353

 Score =  503 bits (1295), Expect = e-140
 Identities = 241/252 (95%), Positives = 242/252 (96%)
 Frame = -2

Query: 756 MTIALGKFTKDEKDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 577
           MT+ALGKFTKDEKDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY
Sbjct: 1   MTLALGKFTKDEKDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 60

Query: 576 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGA 397
           THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGA
Sbjct: 61  THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGA 120

Query: 396 FGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF 217
           FGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF
Sbjct: 121 FGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF 180

Query: 216 RFILFFQGFHNWTLNPFHMMXXXXXXXXXXLCAIHGATVENTLFEDGDGANTFRAFNPTQ 37
           RFILFFQGFHNWTLNPFHMM          LCAIHGATVENTLFEDGDGANTFRAFNPTQ
Sbjct: 181 RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ 240

Query: 36  AEETYSMVTANR 1
           AEETYSMVTANR
Sbjct: 241 AEETYSMVTANR 252


>gb|AFB70740.1| photosystem II D2 protein, partial (chloroplast) [Pereskiopsis
           diguetii] gi|377581208|gb|AFB70742.1| photosystem II D2
           protein, partial (chloroplast) [Weingartia kargliana]
          Length = 353

 Score =  503 bits (1294), Expect = e-140
 Identities = 241/252 (95%), Positives = 242/252 (96%)
 Frame = -2

Query: 756 MTIALGKFTKDEKDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 577
           MTIA+GKFTKDEKDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY
Sbjct: 1   MTIAVGKFTKDEKDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 60

Query: 576 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGA 397
           THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGA
Sbjct: 61  THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGA 120

Query: 396 FGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF 217
           FGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF
Sbjct: 121 FGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF 180

Query: 216 RFILFFQGFHNWTLNPFHMMXXXXXXXXXXLCAIHGATVENTLFEDGDGANTFRAFNPTQ 37
           RFILFFQGFHNWTLNPFHMM          LCAIHGATVENTLFEDGDGANTFRAFNPTQ
Sbjct: 181 RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ 240

Query: 36  AEETYSMVTANR 1
           AEETYSMVTANR
Sbjct: 241 AEETYSMVTANR 252