BLASTX nr result

ID: Cnidium21_contig00020316 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00020316
         (725 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003595972.1| Ribosomal L1 domain-containing protein [Medi...    72   2e-10
ref|XP_002283850.1| PREDICTED: ribosomal L1 domain-containing pr...    72   2e-10
ref|XP_002321931.1| predicted protein [Populus trichocarpa] gi|2...    72   2e-10
emb|CAN65947.1| hypothetical protein VITISV_020727 [Vitis vinifera]    72   2e-10
gb|AFK37631.1| unknown [Medicago truncatula]                           71   2e-10

>ref|XP_003595972.1| Ribosomal L1 domain-containing protein [Medicago truncatula]
           gi|355485020|gb|AES66223.1| Ribosomal L1
           domain-containing protein [Medicago truncatula]
          Length = 432

 Score = 71.6 bits (174), Expect = 2e-10
 Identities = 61/196 (31%), Positives = 86/196 (43%), Gaps = 33/196 (16%)
 Frame = -3

Query: 723 EIERGCMSVMLRLSGGTCSVVKVGKGSLGRDXXXXXXXXXXXXXXXXVPRKWAGVRSFHL 544
           +IE+ C S +L L  GTCSVVKV K S+ RD                +P+KWA VRSFH+
Sbjct: 171 QIEKACSSALLFLRTGTCSVVKVAKLSMERDEIVENVVAAMEGVVEVLPKKWAVVRSFHV 230

Query: 543 KFTESLAMPIYEALANXXXXXXXXXXXXXXXXXXXXXXXXXXXVRSL------------- 403
           K  ESLA+P+Y+A+ +                            +               
Sbjct: 231 KLLESLALPVYQAVPDVRLKIEGVKDLEDKLVKDEKKVKDAKKSKKKGRIHEIKYMDDRM 290

Query: 402 ------KSVGI-VDDDND----GVSGNEK----RESGELGSGEIV---GKK--RKDGDSM 283
                 +SV I +DDD D    GV G +K     E+GE+ SG +V   GKK  +K+  S 
Sbjct: 291 SSDGDDRSVDIDLDDDIDDVVGGVGGGDKVDDDSENGEIESGVLVSKTGKKGVKKEDSSE 350

Query: 282 MSGNKRVKNDLQR*RK 235
           +   K +K   +R +K
Sbjct: 351 LGSVKSLKGSAKRKKK 366


>ref|XP_002283850.1| PREDICTED: ribosomal L1 domain-containing protein 1-like [Vitis
           vinifera]
          Length = 394

 Score = 71.6 bits (174), Expect = 2e-10
 Identities = 56/192 (29%), Positives = 81/192 (42%), Gaps = 35/192 (18%)
 Frame = -3

Query: 723 EIERGCMSVMLRLSGGTCSVVKVGKGSLGRDXXXXXXXXXXXXXXXXVPRKWAGVRSFHL 544
           +I+R C S +L L  GTCSVV+VGK S+ ++                VP+K AGVRS HL
Sbjct: 172 QIDRACGSALLYLRTGTCSVVRVGKLSMEKEQIVENVVAAIDGVVELVPKKLAGVRSLHL 231

Query: 543 KFTESLAMPIYEALANXXXXXXXXXXXXXXXXXXXXXXXXXXXVRSLK------------ 400
           K  ESLA+P+Y+A+ +                               K            
Sbjct: 232 KLLESLALPVYQAVPDMRLKIEGVLEKESEEVKEEEESGRVEKGEKKKVGKKGRIHEVRY 291

Query: 399 ----SVGIVDDDNDGVSGNEKRESG------ELGSGEIVGKKRK-------------DGD 289
                 G++++D     G+E  + G      ELG GEIVGKKRK             +G+
Sbjct: 292 MDGDVGGLLEEDELDGDGDEDDDEGDKSADDELGGGEIVGKKRKKEKTKKEQALSDLNGE 351

Query: 288 SMMSGNKRVKND 253
             +  +K+VK +
Sbjct: 352 KPLKKSKKVKKE 363


>ref|XP_002321931.1| predicted protein [Populus trichocarpa] gi|222868927|gb|EEF06058.1|
           predicted protein [Populus trichocarpa]
          Length = 384

 Score = 71.6 bits (174), Expect = 2e-10
 Identities = 34/74 (45%), Positives = 46/74 (62%)
 Frame = -3

Query: 723 EIERGCMSVMLRLSGGTCSVVKVGKGSLGRDXXXXXXXXXXXXXXXXVPRKWAGVRSFHL 544
           +I++ C S +L L  GTCSVVKVG+ S+ R+                VPRKW GVRSFHL
Sbjct: 179 QIDKACGSALLYLRSGTCSVVKVGRVSMSREEIAKNVMAAINGIADIVPRKWGGVRSFHL 238

Query: 543 KFTESLAMPIYEAL 502
           K  +SLA+P+Y+ +
Sbjct: 239 KLLDSLALPVYQVV 252


>emb|CAN65947.1| hypothetical protein VITISV_020727 [Vitis vinifera]
          Length = 394

 Score = 71.6 bits (174), Expect = 2e-10
 Identities = 56/192 (29%), Positives = 81/192 (42%), Gaps = 35/192 (18%)
 Frame = -3

Query: 723 EIERGCMSVMLRLSGGTCSVVKVGKGSLGRDXXXXXXXXXXXXXXXXVPRKWAGVRSFHL 544
           +I+R C S +L L  GTCSVV+VGK S+ ++                VP+K AGVRS HL
Sbjct: 172 QIDRACGSALLYLRTGTCSVVRVGKLSMEKEQIVENVVAAIDGVVELVPKKLAGVRSLHL 231

Query: 543 KFTESLAMPIYEALANXXXXXXXXXXXXXXXXXXXXXXXXXXXVRSLK------------ 400
           K  ESLA+P+Y+A+ +                               K            
Sbjct: 232 KLLESLALPVYQAVPDMRLKIEGVLEKESEEVKEEEESGRVEKGEKKKVGKKGRIHEVRY 291

Query: 399 ----SVGIVDDDNDGVSGNEKRESG------ELGSGEIVGKKRK-------------DGD 289
                 G++++D     G+E  + G      ELG GEIVGKKRK             +G+
Sbjct: 292 MDGDVGGLLEEDELDGDGDEDDDEGDKSADDELGGGEIVGKKRKKXXTKKEQALSDLNGE 351

Query: 288 SMMSGNKRVKND 253
             +  +K+VK +
Sbjct: 352 KPLKKSKKVKKE 363


>gb|AFK37631.1| unknown [Medicago truncatula]
          Length = 432

 Score = 71.2 bits (173), Expect = 2e-10
 Identities = 60/196 (30%), Positives = 83/196 (42%), Gaps = 33/196 (16%)
 Frame = -3

Query: 723 EIERGCMSVMLRLSGGTCSVVKVGKGSLGRDXXXXXXXXXXXXXXXXVPRKWAGVRSFHL 544
           +IE+ C S +L L  GTCSVVKV K S+ RD                +P+KWA VRSFH+
Sbjct: 171 QIEKACSSALLFLRTGTCSVVKVAKLSMERDEIVENVVAAMEGVVEVLPKKWAVVRSFHV 230

Query: 543 KFTESLAMPIYEALANXXXXXXXXXXXXXXXXXXXXXXXXXXXVRSL------------- 403
           K  ESLA+P+Y+A+ +                            +               
Sbjct: 231 KLLESLALPVYQAVPDVRLKIEGVKDLEDKLVKDEKKVKDAKKSKKKGRIHEIKYMDDRM 290

Query: 402 ------KSVGI-VDDDND----GVSGNEK----RESGELGSGEIVGKKRKDG-----DSM 283
                 +SV I +DDD D    GV G +K     E+GE+ SG +V K  K G      S 
Sbjct: 291 SSDGDDRSVDIDLDDDIDDVVGGVGGGDKVDDDSENGEIESGVLVSKTGKKGVEKEDSSE 350

Query: 282 MSGNKRVKNDLQR*RK 235
           +   K +K   +R +K
Sbjct: 351 LGSVKSLKGSAKRKKK 366


Top