BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00020148
         (911 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI28010.3| unnamed protein product [Vitis vinifera]              293   5e-77
ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polyme...   285   1e-74
ref|XP_003517644.1| PREDICTED: probable RNA-dependent RNA polyme...   255   9e-66
ref|XP_002883963.1| RNA-dependent RNA polymerase family protein ...   251   2e-64
ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polyme...   249   8e-64

>emb|CBI28010.3| unnamed protein product [Vitis vinifera]
          Length = 929

 Score =  293 bits (749), Expect = 5e-77
 Identities = 161/303 (53%), Positives = 212/303 (69%), Gaps = 7/303 (2%)
 Frame = +1

Query: 16  RSQKTLELLIRLSKLEFRKAFLLLSYIGRNKIVDIMSVNEAVELVRLNELPMETFEEYIW 195
           R Q +   L+ L +LEFRKAFL+LSYIG  +  D++S   A E+++L  LPM  FE  +W
Sbjct: 94  RRQASSPQLVALGELEFRKAFLILSYIGDKRPEDLLS---AEEILKLKNLPMGVFETEVW 150

Query: 196 SNYGRRYLGEDSPDRINHQDWDSRRTHLFYCYVYQDGTYSFKGPYLDTTKTHLQRALGDE 375
           +N GR+++ E+  DR    DWDS +TH+++C+V  DG+Y FKGPYL+ T+THLQR LGDE
Sbjct: 151 NNLGRKFIKEE--DRQRSFDWDSDKTHIYHCHVSPDGSYRFKGPYLNKTRTHLQRVLGDE 208

Query: 376 NILIVRFYE-----CDINIS-DYSAMCTKIVKRGILVGLRLYRHFGFKDGGREEKRKNPF 537
           NIL+V+F E       +N S D +A   KI + GI VGLR YR F FKDGG+EEK+KNP 
Sbjct: 209 NILLVKFAEDVTDRSSLNCSTDSNASYNKIAREGIFVGLRQYRFFVFKDGGKEEKKKNP- 267

Query: 538 LSSVKFYFVRTESIAPSDKNATYLLAKKTICEARCLFMHIHMTSSMAKYVSRFSLILSNT 717
            SSVK YFV  ES A         L+ KT+ EARC+FMH HM SS+AKY++RFSLILS T
Sbjct: 268 TSSVKCYFVFMESSA---------LSGKTVHEARCIFMHAHMVSSVAKYMARFSLILSKT 318

Query: 718 IKLQVDLDSVLIEVIEDIPCRDKNGCDVY-EDGERLIHTDGTGYIAEDLAMKCPKDIFSA 894
           +KL VDL +V I+ I+D P RD++G  VY ED + LI TDGTG+I+EDLA++CP ++   
Sbjct: 319 VKLDVDLSTVNIQRIDDEPGRDEDGHVVYDEDWKPLILTDGTGFISEDLALRCPNNLCRG 378

Query: 895 KYL 903
           KY+
Sbjct: 379 KYM 381


>ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
           vinifera]
          Length = 943

 Score =  285 bits (729), Expect = 1e-74
 Identities = 161/311 (51%), Positives = 212/311 (68%), Gaps = 15/311 (4%)
 Frame = +1

Query: 16  RSQKTLELLIRLSKLEFRKAFLLLSYIGRNKIVDIMSVNEAVELVRLNELPMETFEEYIW 195
           R Q +   L+ L +LEFRKAFL+LSYIG  +  D++S   A E+++L  LPM  FE  +W
Sbjct: 94  RRQASSPQLVALGELEFRKAFLILSYIGELRPEDLLS---AEEILKLKNLPMGVFETEVW 150

Query: 196 SNYGRRYLGEDSPDRINHQDWDSRRTHLFYCYVYQDGTYSFK--------GPYLDTTKTH 351
           +N GR+++ E+  DR    DWDS +TH+++C+V  DG+Y FK        GPYL+ T+TH
Sbjct: 151 NNLGRKFIKEE--DRQRSFDWDSDKTHIYHCHVSPDGSYRFKVCISSSLNGPYLNKTRTH 208

Query: 352 LQRALGDENILIVRFYE-----CDINIS-DYSAMCTKIVKRGILVGLRLYRHFGFKDGGR 513
           LQR LGDENIL+V+F E       +N S D +A   KI + GI VGLR YR F FKDGG+
Sbjct: 209 LQRVLGDENILLVKFAEDVTDRSSLNCSTDSNASYNKIAREGIFVGLRQYRFFVFKDGGK 268

Query: 514 EEKRKNPFLSSVKFYFVRTESIAPSDKNATYLLAKKTICEARCLFMHIHMTSSMAKYVSR 693
           EEK+KNP  SSVK YFV  ES A         L+ KT+ EARC+FMH HM SS+AKY++R
Sbjct: 269 EEKKKNP-TSSVKCYFVFMESSA---------LSGKTVHEARCIFMHAHMVSSVAKYMAR 318

Query: 694 FSLILSNTIKLQVDLDSVLIEVIEDIPCRDKNGCDVY-EDGERLIHTDGTGYIAEDLAMK 870
           FSLILS T+KL VDL +V I+ I+D P RD++G  VY ED + LI TDGTG+I+EDLA++
Sbjct: 319 FSLILSKTVKLDVDLSTVNIQRIDDEPGRDEDGHVVYDEDWKPLILTDGTGFISEDLALR 378

Query: 871 CPKDIFSAKYL 903
           CP ++   KY+
Sbjct: 379 CPNNLCRGKYM 389


>ref|XP_003517644.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Glycine
           max]
          Length = 953

 Score =  255 bits (652), Expect = 9e-66
 Identities = 134/296 (45%), Positives = 197/296 (66%), Gaps = 7/296 (2%)
 Frame = +1

Query: 37  LLIRLSKLEFRKAFLLLSYIGRNKIVDIMSVNEAVELVRLNELPMETFEEYIWSNYGRRY 216
           LL  L +LEFRKAFL+LSYIGR  + + ++     ++  L +LPM  FE+ IW ++G + 
Sbjct: 88  LLHALGELEFRKAFLILSYIGRESLENCIT---DAKIRSLKDLPMAKFEKTIWEDFGEKC 144

Query: 217 LGEDSPDRINHQDWDSRRTHLFYCYVYQDGTYSFKGPYLDTTKTHLQRALGDENILIVRF 396
           + + S  ++   +W+S RTH++ C+V+ DG   FKGP L +T+THLQ+ LGD+N+L+V+F
Sbjct: 145 IYDQSDRQL--VNWNSGRTHVYQCFVFPDGNLRFKGPILQSTRTHLQKTLGDDNVLLVKF 202

Query: 397 YECD------INISDYSAMCTKIVKRGILVGLRLYRHFGFKDGGREEKRKNPFLSSVKFY 558
            E         +  + +A+  K  K GI VGLRLYR F FKDGG EEK+K+P  S+VK Y
Sbjct: 203 AEDGSGKNFRTHAEEANALYGKFGKEGIRVGLRLYRFFVFKDGGNEEKQKDPTSSTVKCY 262

Query: 559 FVRTESIAPSDKNATYLLAKKTICEARCLFMHIHM-TSSMAKYVSRFSLILSNTIKLQVD 735
           FVR +S   +D+ A Y+L+ KT+ EAR LFMH HM   ++ KY++RFSLILS T+KL +D
Sbjct: 263 FVRMQSGCSADEGADYILSNKTVSEARTLFMHAHMLLPNLNKYMARFSLILSKTLKLNID 322

Query: 736 LDSVLIEVIEDIPCRDKNGCDVYEDGERLIHTDGTGYIAEDLAMKCPKDIFSAKYL 903
           L +V ++ I D  C+D NG  + ++ +  I TDGTG+I+ DLA+ CP +++    L
Sbjct: 323 LTTVSVQKIPDEYCKDANGNIMVDNEKPRILTDGTGFISRDLALLCPNNVYKGSNL 378


>ref|XP_002883963.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
            subsp. lyrata] gi|297329803|gb|EFH60222.1| RNA-dependent
            RNA polymerase family protein [Arabidopsis lyrata subsp.
            lyrata]
          Length = 981

 Score =  251 bits (640), Expect = 2e-64
 Identities = 133/294 (45%), Positives = 186/294 (63%), Gaps = 6/294 (2%)
 Frame = +1

Query: 40   LIRLSKLEFRKAFLLLSYIGRNKIVDIMSVNEAVELVRL-NELPMETFEEYIWSNYGRRY 216
            L+ L +LEF+KAFLLLSYI   ++  + + +E    +RL  +LPM  +E  +W   GRRY
Sbjct: 141  LVALGELEFKKAFLLLSYIPGQQLGQVTTADE----IRLWKDLPMVAYEAAVWDRLGRRY 196

Query: 217  LGEDSPDRINHQDWDSRRTHLFYCYVYQDGTYSFKGPYLDTTKTHLQRALGDENILIVRF 396
              +     +    WDS +TH + C+V  DG+Y+FKGP L+ T THL + LGDEN+L V+F
Sbjct: 197  CPQTDRRMLQ---WDSGKTHYYQCHVAPDGSYTFKGPLLEHTGTHLHKVLGDENVLTVKF 253

Query: 397  YECDINISDYSA----MCTKIVKRGILVGLRLYRHFGFKDGGREEKRKNPFLSSVKFYFV 564
             +   N S YS        +I K GI++GLR Y+ F FKDGG+EEK+K+     VK YF+
Sbjct: 254  ADVPKNSSTYSNDRYFTYKEIAKNGIMIGLRRYQFFVFKDGGKEEKKKDLSTKKVKCYFI 313

Query: 565  RTESIAPSDKNATYLLAKKTICEARCLFMHIHMTSSMAKYVSRFSLILSNTIKLQVDLDS 744
            RT+S A  D    Y+   K+I EAR  FMH+H   ++A Y++RFSLILS T  L+VD+  
Sbjct: 314  RTDSTASCDMENPYIFTGKSIHEARMHFMHVHRAPTLANYMARFSLILSKTKTLEVDMTG 373

Query: 745  VLIEVIEDIPCRDKNGCDVYEDGER-LIHTDGTGYIAEDLAMKCPKDIFSAKYL 903
            +  + I+DI C D++G DV +  ++  IH+DGTGYI+EDLA  CP +IF  K L
Sbjct: 374  ITFDPIDDIHCHDQDGKDVLDKNKKPCIHSDGTGYISEDLARMCPLNIFKGKCL 427


>ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cucumis
            sativus]
          Length = 1056

 Score =  249 bits (635), Expect = 8e-64
 Identities = 133/284 (46%), Positives = 187/284 (65%), Gaps = 19/284 (6%)
 Frame = +1

Query: 103  NKIVDIMSVNEAVELVRLNELPMETFEEYIWSNYGR---RYLG---------EDSPDR-I 243
            + ++D   +++ V L  L    +   ++  W  YG    R+LG         E  P   +
Sbjct: 195  SSVLDRARISQFVALGELEFRKITLLKKRPWLLYGNQVERWLGWELVSVTHSESLPSYLV 254

Query: 244  NHQDWDSRRTHLFYCYVYQDGTYSFKGPYLDTTKTHLQRALGDENILIVRFYE--CDINI 417
             + DWD R+TH+++C+V  DG+  FKGP+L+ TKTHLQR LGD+N+L+V+F E   D  +
Sbjct: 255  QYVDWDRRKTHIYHCHVALDGSCRFKGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTPL 314

Query: 418  SDYSA----MCTKIVKRGILVGLRLYRHFGFKDGGREEKRKNPFLSSVKFYFVRTESIAP 585
            S++S       +KI + GIL+GLR Y  F FKDGG+EEK+KNP  S+VK YFVR ES A 
Sbjct: 315  SNHSGGSFYAYSKIARDGILLGLRRYHFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAY 374

Query: 586  SDKNATYLLAKKTICEARCLFMHIHMTSSMAKYVSRFSLILSNTIKLQVDLDSVLIEVIE 765
             DK   Y L+ +T+ EAR LFMH HM SS+A Y++RFSLILS TI L++DL +V ++ I 
Sbjct: 375  IDKIEPYKLSNRTVFEARSLFMHAHMVSSIASYMARFSLILSKTINLKIDLSTVNVQRIG 434

Query: 766  DIPCRDKNGCDVYEDGERLIHTDGTGYIAEDLAMKCPKDIFSAK 897
            DIPC+D  G  +Y DG+ LIHTDGTG+I+EDLA++CP ++F  +
Sbjct: 435  DIPCKDIYGNVIYRDGKPLIHTDGTGFISEDLALECPMNVFKGQ 478