BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00019548
         (386 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAN65018.1| putative polyprotein [Oryza sativa Japonica Group...   121   7e-26
gb|AAO72413.1| gag-pol polyprotein [Oryza sativa Japonica Group]...   117   7e-25
gb|ABH07409.1| putative pol polyprotein [Brassica oleracea var. ...   115   3e-24
gb|ABB47537.2| retrotransposon protein, putative, unclassified [...   115   3e-24
ref|NP_001060895.1| Os08g0125300 [Oryza sativa Japonica Group] g...   115   5e-24

>gb|AAN65018.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|108711344|gb|ABF99139.1| retrotransposon protein,
           putative, unclassified [Oryza sativa Japonica Group]
          Length = 1394

 Score =  121 bits (303), Expect = 7e-26
 Identities = 51/91 (56%), Positives = 67/91 (73%)
 Frame = -2

Query: 385 PTRAVSGMTPYEAWSGNKPNIGHIRVFGCLAHMKLPSVHTTKLDERSKTVINLGKEPGTK 206
           PT+A+   TPYEAW+G KP++ H+RVFGC AH K+ + H  KLD+RS   + LG E G+K
Sbjct: 613 PTKAMGNRTPYEAWTGKKPHLAHLRVFGCTAHAKITTPHLKKLDDRSAPYVYLGVEEGSK 672

Query: 205 AYRLYDPKNKSVHVSRDVVFEENKVWPWKHD 113
           A+RL+DP+   +HVSRDV+FEEN VW W  D
Sbjct: 673 AHRLFDPRRGRIHVSRDVIFEENAVWQWLGD 703


>gb|AAO72413.1| gag-pol polyprotein [Oryza sativa Japonica Group]
           gi|108710383|gb|ABF98178.1| retrotransposon protein,
           putative, unclassified [Oryza sativa Japonica Group]
          Length = 1339

 Score =  117 bits (294), Expect = 7e-25
 Identities = 49/88 (55%), Positives = 67/88 (76%)
 Frame = -2

Query: 385 PTRAVSGMTPYEAWSGNKPNIGHIRVFGCLAHMKLPSVHTTKLDERSKTVINLGKEPGTK 206
           PT+A+   TP+EAW+G KP++GH+RVFGC AH K+ + H  KLD+RS  V+ LG E G+K
Sbjct: 651 PTKAMGNRTPFEAWTGKKPHLGHLRVFGCTAHAKVTAPHLKKLDDRSNPVVYLGVEEGSK 710

Query: 205 AYRLYDPKNKSVHVSRDVVFEENKVWPW 122
           A+RL+DP+ + + VSRDVVF+EN  W W
Sbjct: 711 AHRLFDPRRRQIIVSRDVVFDENTPWQW 738


>gb|ABH07409.1| putative pol polyprotein [Brassica oleracea var. botrytis]
          Length = 1239

 Score =  115 bits (289), Expect = 3e-24
 Identities = 53/97 (54%), Positives = 72/97 (74%)
 Frame = -2

Query: 385 PTRAVSGMTPYEAWSGNKPNIGHIRVFGCLAHMKLPSVHTTKLDERSKTVINLGKEPGTK 206
           PTRA+   TPYE++ G KP+IGHIRVFGCLA+ KL +    KLD+RS+T+++LG EPG+K
Sbjct: 537 PTRALKNQTPYESFKGRKPSIGHIRVFGCLAYAKLDAALLKKLDDRSQTLVHLGIEPGSK 596

Query: 205 AYRLYDPKNKSVHVSRDVVFEENKVWPWKHDKETRGN 95
           AYRLY+P  + + VSRDV F+E   W W  ++  +GN
Sbjct: 597 AYRLYNPSTRRIVVSRDVKFDEKACWNW--NETDKGN 631


>gb|ABB47537.2| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 1172

 Score =  115 bits (289), Expect = 3e-24
 Identities = 48/88 (54%), Positives = 66/88 (75%)
 Frame = -2

Query: 385 PTRAVSGMTPYEAWSGNKPNIGHIRVFGCLAHMKLPSVHTTKLDERSKTVINLGKEPGTK 206
           PT+A+   TP+EAW+G KP++GH+RVFGC AH K+ + H  KLD+RS   + LG E G+K
Sbjct: 545 PTKAMGNRTPFEAWTGKKPHLGHLRVFGCTAHAKVTAPHLKKLDDRSNPFVYLGVEEGSK 604

Query: 205 AYRLYDPKNKSVHVSRDVVFEENKVWPW 122
           A+RL+DP+ + + VSRDVVF+EN  W W
Sbjct: 605 AHRLFDPRRRQIIVSRDVVFDENTPWQW 632


>ref|NP_001060895.1| Os08g0125300 [Oryza sativa Japonica Group]
           gi|113622864|dbj|BAF22809.1| Os08g0125300 [Oryza sativa
           Japonica Group] gi|215701150|dbj|BAG92574.1| unnamed
           protein product [Oryza sativa Japonica Group]
          Length = 1427

 Score =  115 bits (287), Expect = 5e-24
 Identities = 48/88 (54%), Positives = 66/88 (75%)
 Frame = -2

Query: 385 PTRAVSGMTPYEAWSGNKPNIGHIRVFGCLAHMKLPSVHTTKLDERSKTVINLGKEPGTK 206
           PT+A+   TP+EAW+G KP +GH+RVFGC+AH K+ + +  KLD+RS   + LG E G+K
Sbjct: 698 PTKAMGDRTPFEAWTGRKPQLGHLRVFGCIAHAKITTPNQKKLDDRSAPYVYLGVEEGSK 757

Query: 205 AYRLYDPKNKSVHVSRDVVFEENKVWPW 122
           A+RL+DP+   +HVSRDV+FEEN  W W
Sbjct: 758 AHRLFDPRCGRIHVSRDVIFEENVPWQW 785