BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00019390
         (1029 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI21137.3| unnamed protein product [Vitis vinifera]              440   e-121
ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D sub...   440   e-121
gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum...   423   e-116
gb|ABG29321.1| DNA-directed RNA polymerase, putative [Solanum bu...   408   e-111
ref|XP_004157128.1| PREDICTED: DNA-directed RNA polymerase D sub...   383   e-104

>emb|CBI21137.3| unnamed protein product [Vitis vinifera]
          Length = 1220

 Score =  440 bits (1132), Expect = e-121
 Identities = 214/343 (62%), Positives = 267/343 (77%), Gaps = 1/343 (0%)
 Frame = -2

Query: 1028 DSIGEITVQPGYDPSKKGDGDWRYASVKFGKVKLAPPTFFTGEKFYNDNAIDFVDFYPRH 849
            DS GEI V+PGYDPSK+G+GDWRYASV+FGKV L  P  + GE     +  + ++F PRH
Sbjct: 120  DSFGEIPVEPGYDPSKRGEGDWRYASVRFGKVTLERPRVWAGES----DGKESLNFLPRH 175

Query: 848  ARLQNMTYSSKMKVEVHLQVYTQKMVRSDKFKTGKE-QYVDKAVCKEIREEIPIGTLPVM 672
            ARLQNMTYSS+MK +VH QVYTQK+VRSDK+KTGK+ +YV+K V  E   +I IG +PVM
Sbjct: 176  ARLQNMTYSSRMKAQVHFQVYTQKLVRSDKYKTGKDNKYVEKKVIFEDNRDILIGRIPVM 235

Query: 671  VNSDLCWMKNVKQGDCDFDHGGYFIIKGAEKTFVAQEQICLKRLWLTSSPSWIASYRHVF 492
            V S+LCWM  V++GDC++DHGGYF+IKGAEKTF+AQEQICLKRLW++S+P+W+ +YR ++
Sbjct: 236  VKSELCWMNGVERGDCEYDHGGYFLIKGAEKTFIAQEQICLKRLWVSSNPTWMVAYRPIW 295

Query: 491  KRNRVHVKLLDPKSDDIGGGEKILTVYFLGMEIPIWILFFALGVSSXXXXXXXXXXXXXD 312
            KR RV+VKL  PK ++  GGEK+LTVYF   EIPIWILFFALG SS             D
Sbjct: 296  KRKRVYVKLEPPKDENNRGGEKVLTVYFSSTEIPIWILFFALGASSDKEVVDLIDFNIDD 355

Query: 311  GRIVNIMIASIHHADKECDEECGEKFRRRGIALKYVEKKLKSCPFPPAESVEECINKYLF 132
              I NI++ASIH AD+E +++ G  FRR+G A+ +V+K +KSC FPP ES++ECI+KYLF
Sbjct: 356  AGISNILVASIHEADREAEKK-GMYFRRQGNAISFVDKLVKSCKFPPGESIQECISKYLF 414

Query: 131  SSLTGFKQKARVLTYMTKCLLQAYTGRRKVDNRDDFRNKRLEL 3
             + +G KQKAR L YM KCLLQAYTGRRK DNRDDFRNKRLEL
Sbjct: 415  PNFSGVKQKARFLGYMVKCLLQAYTGRRKCDNRDDFRNKRLEL 457


>ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
            vinifera]
          Length = 1198

 Score =  440 bits (1132), Expect = e-121
 Identities = 214/343 (62%), Positives = 267/343 (77%), Gaps = 1/343 (0%)
 Frame = -2

Query: 1028 DSIGEITVQPGYDPSKKGDGDWRYASVKFGKVKLAPPTFFTGEKFYNDNAIDFVDFYPRH 849
            DS GEI V+PGYDPSK+G+GDWRYASV+FGKV L  P  + GE     +  + ++F PRH
Sbjct: 84   DSFGEIPVEPGYDPSKRGEGDWRYASVRFGKVTLERPRVWAGES----DGKESLNFLPRH 139

Query: 848  ARLQNMTYSSKMKVEVHLQVYTQKMVRSDKFKTGKE-QYVDKAVCKEIREEIPIGTLPVM 672
            ARLQNMTYSS+MK +VH QVYTQK+VRSDK+KTGK+ +YV+K V  E   +I IG +PVM
Sbjct: 140  ARLQNMTYSSRMKAQVHFQVYTQKLVRSDKYKTGKDNKYVEKKVIFEDNRDILIGRIPVM 199

Query: 671  VNSDLCWMKNVKQGDCDFDHGGYFIIKGAEKTFVAQEQICLKRLWLTSSPSWIASYRHVF 492
            V S+LCWM  V++GDC++DHGGYF+IKGAEKTF+AQEQICLKRLW++S+P+W+ +YR ++
Sbjct: 200  VKSELCWMNGVERGDCEYDHGGYFLIKGAEKTFIAQEQICLKRLWVSSNPTWMVAYRPIW 259

Query: 491  KRNRVHVKLLDPKSDDIGGGEKILTVYFLGMEIPIWILFFALGVSSXXXXXXXXXXXXXD 312
            KR RV+VKL  PK ++  GGEK+LTVYF   EIPIWILFFALG SS             D
Sbjct: 260  KRKRVYVKLEPPKDENNRGGEKVLTVYFSSTEIPIWILFFALGASSDKEVVDLIDFNIDD 319

Query: 311  GRIVNIMIASIHHADKECDEECGEKFRRRGIALKYVEKKLKSCPFPPAESVEECINKYLF 132
              I NI++ASIH AD+E +++ G  FRR+G A+ +V+K +KSC FPP ES++ECI+KYLF
Sbjct: 320  AGISNILVASIHEADREAEKK-GMYFRRQGNAISFVDKLVKSCKFPPGESIQECISKYLF 378

Query: 131  SSLTGFKQKARVLTYMTKCLLQAYTGRRKVDNRDDFRNKRLEL 3
             + +G KQKAR L YM KCLLQAYTGRRK DNRDDFRNKRLEL
Sbjct: 379  PNFSGVKQKARFLGYMVKCLLQAYTGRRKCDNRDDFRNKRLEL 421


>gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum lycopersicum]
          Length = 1123

 Score =  423 bits (1087), Expect = e-116
 Identities = 209/343 (60%), Positives = 260/343 (75%), Gaps = 1/343 (0%)
 Frame = -2

Query: 1028 DSIGEITVQPGYDPSKKGDGDWRYASVKFGKVKLAPPTFFTGEKFYNDNAIDFVDFYPRH 849
            DS+GEI V+PGYDPSK+GDGDW++ASVKFGKV L  P F+ GEKF      +++D  PRH
Sbjct: 98   DSVGEIHVEPGYDPSKRGDGDWKHASVKFGKVTLERPKFWAGEKFSVGGGKEYLDLLPRH 157

Query: 848  ARLQNMTYSSKMKVEVHLQVYTQKMVRSDKFKTGKEQYVDKAVCKEIREEIPIGTLPVMV 669
            ARLQNMTYS+++ VE H+QVYT+K+VRSDKFKTG +++VDK    E + ++ IG +PVMV
Sbjct: 158  ARLQNMTYSARIMVETHVQVYTKKLVRSDKFKTGVDRFVDKEWEVEGKRDVLIGRIPVMV 217

Query: 668  NSDLCWMKNVKQGDCDFDHGGYFIIKGAEKTFVAQEQICLKRLWLTSSPSWIASYRHVFK 489
            NS+LCWM  V + DC+FDHGGYFI KGAEKTF+AQEQ+CLKRLW++++P+W+  YR   K
Sbjct: 218  NSELCWMNGVDKLDCEFDHGGYFIAKGAEKTFIAQEQLCLKRLWVSNNPTWMVGYRPGEK 277

Query: 488  RNRVHVKLLDP-KSDDIGGGEKILTVYFLGMEIPIWILFFALGVSSXXXXXXXXXXXXXD 312
            R RV++KL +  K + I GGEK L+VY L  E+PIW+LFFALGVSS             D
Sbjct: 278  RKRVYIKLTETLKLEHIKGGEKALSVYILA-EMPIWVLFFALGVSSDREVVNLIDVDIED 336

Query: 311  GRIVNIMIASIHHADKECDEECGEKFRRRGIALKYVEKKLKSCPFPPAESVEECINKYLF 132
              IVNI++ASIH ADK C     E FR+   AL YV++ +K+C FPP ESVEECIN YLF
Sbjct: 337  TTIVNILVASIHEADKNC-----EDFRKGKKALAYVDRLIKNCKFPPQESVEECINAYLF 391

Query: 131  SSLTGFKQKARVLTYMTKCLLQAYTGRRKVDNRDDFRNKRLEL 3
             +L+GFKQKAR L YM KCLL ++ GRRKVDNRDDFRNKRLEL
Sbjct: 392  PNLSGFKQKARFLGYMVKCLLHSFIGRRKVDNRDDFRNKRLEL 434


>gb|ABG29321.1| DNA-directed RNA polymerase, putative [Solanum bulbocastanum]
          Length = 1018

 Score =  408 bits (1049), Expect = e-111
 Identities = 204/343 (59%), Positives = 256/343 (74%), Gaps = 1/343 (0%)
 Frame = -2

Query: 1028 DSIGEITVQPGYDPSKKGDGDWRYASVKFGKVKLAPPTFFTGEKFYNDNAIDFVDFYPRH 849
            DS+GEI V+PGYDPSKKG+GDW++ASVKFGKV L  P F+ GEKF   N  ++++ +PRH
Sbjct: 106  DSVGEIHVEPGYDPSKKGEGDWKHASVKFGKVTLDRPKFWAGEKFSAYNGEEYLNLWPRH 165

Query: 848  ARLQNMTYSSKMKVEVHLQVYTQKMVRSDKFKTGKEQYVDKAVCKEIREEIPIGTLPVMV 669
            ARLQNMTYS+++ VE H  V+T+K+VRSDKFKTG EQ+VDK    E + ++ IG +PVMV
Sbjct: 166  ARLQNMTYSARIIVETH--VFTKKLVRSDKFKTGVEQFVDKECVMEDKRDVFIGRIPVMV 223

Query: 668  NSDLCWMKNVKQGDCDFDHGGYFIIKGAEKTFVAQEQICLKRLWLTSSPSWIASYRHVFK 489
            NS+LCWM    + DC+FDHGGYFI+KGAEK F+AQEQICLKRLW+++  +W+ +YR   K
Sbjct: 224  NSELCWMSGADRPDCEFDHGGYFIVKGAEKIFIAQEQICLKRLWVSNHSTWMVAYRSGEK 283

Query: 488  RNRVHVKLLDP-KSDDIGGGEKILTVYFLGMEIPIWILFFALGVSSXXXXXXXXXXXXXD 312
            RNRV++KL +  K + I G  K L+VYF   E+PIW+LFFALGVSS             D
Sbjct: 284  RNRVYLKLTETLKHEHIKGEAKALSVYFFA-EMPIWVLFFALGVSSDREVVDLIDVDIKD 342

Query: 311  GRIVNIMIASIHHADKECDEECGEKFRRRGIALKYVEKKLKSCPFPPAESVEECINKYLF 132
              I+NI++ASIH ADK C     E FR+   AL YV++ +KSC FPP ESVEECI +YLF
Sbjct: 343  TNIINILVASIHDADKNC-----EDFRKGKKALAYVDRLVKSCKFPPQESVEECIKEYLF 397

Query: 131  SSLTGFKQKARVLTYMTKCLLQAYTGRRKVDNRDDFRNKRLEL 3
             +L+G KQKAR L YM KCLL +Y GRRKVDNRDDFRNKRL+L
Sbjct: 398  PNLSGLKQKARFLGYMVKCLLLSYIGRRKVDNRDDFRNKRLDL 440


>ref|XP_004157128.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cucumis
            sativus]
          Length = 1031

 Score =  383 bits (983), Expect = e-104
 Identities = 192/348 (55%), Positives = 247/348 (70%), Gaps = 6/348 (1%)
 Frame = -2

Query: 1028 DSIGEITVQPGYDPSKKGDGDWRYASVKFGKVKLAPPTFFTGE---KFYNDNAIDFVDFY 858
            D  G+I VQPGYDPSKKGDG+WRYA+VKFGKV L  P F+ G    K YN          
Sbjct: 86   DFFGDILVQPGYDPSKKGDGEWRYATVKFGKVTLDKPKFWGGAASGKEYN--------ML 137

Query: 857  PRHARLQNMTYSSKMKVEVHLQVYTQKMVRSDKFKTGKEQYVDKAVCKEIRE--EIPIGT 684
            PRHARLQNMTYSS+MK+ + L++YTQK+V SDKFKTGK+QYVDK   +   +  ++ IG 
Sbjct: 138  PRHARLQNMTYSSRMKINISLEIYTQKLVSSDKFKTGKDQYVDKEPVEGASDNRDVFIGR 197

Query: 683  LPVMVNSDLCWMKNVKQGDCDFDHGGYFIIKGAEKTFVAQEQICLKRLWLTSSPSWIASY 504
            LPVMVNSDLCWMK+ ++ DC+FD GGYF+IKGAEK F+AQEQICL+RLW+++   W  +Y
Sbjct: 198  LPVMVNSDLCWMKDEQKRDCEFDRGGYFLIKGAEKIFIAQEQICLRRLWISNVQGWTVAY 257

Query: 503  RHVFKRNRVHVKLLD-PKSDDIGGGEKILTVYFLGMEIPIWILFFALGVSSXXXXXXXXX 327
            R   KRNR+ ++L++  KS+D+   EK+L VYFL  E+P+WILFFALGVSS         
Sbjct: 258  RSEVKRNRLIIRLVENSKSEDLKSKEKVLNVYFLSTEVPVWILFFALGVSSDKEIVDLID 317

Query: 326  XXXXDGRIVNIMIASIHHADKECDEECGEKFRRRGIALKYVEKKLKSCPFPPAESVEECI 147
                D  ++NI+ AS+   D   +++  + FRR   AL +++ +++   FPPA+ +E+C+
Sbjct: 318  YGRDDPTVLNILFASVREVD---NDDKWKDFRRGKRALTFLDNEIRKTSFPPADKIEDCL 374

Query: 146  NKYLFSSLTGFKQKARVLTYMTKCLLQAYTGRRKVDNRDDFRNKRLEL 3
            N YLF+SL G KQK   L YM KCLLQAYTGRRK DNRDDFRNKR EL
Sbjct: 375  NLYLFASLKGSKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKRFEL 422