BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00019255
         (690 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003600162.1| DNA-directed RNA polymerase [Medicago trunca...    63   6e-08

>ref|XP_003600162.1| DNA-directed RNA polymerase [Medicago truncatula]
           gi|355489210|gb|AES70413.1| DNA-directed RNA polymerase
           [Medicago truncatula]
          Length = 2083

 Score = 62.8 bits (151), Expect = 6e-08
 Identities = 60/219 (27%), Positives = 91/219 (41%), Gaps = 4/219 (1%)
 Frame = -1

Query: 690 MLSDDYYEQDGDERPNDLMHNKIGNNSIGLNSNLKPRPVVADMYQSRMSKALNXXXXXXX 511
           MLSDD Y QDG+E+  + +H++    S G NS L+P     +    R S+ L+       
Sbjct: 151 MLSDDSYGQDGEEQ-GESVHSRGFRPSTGSNSCLQPTSTNVNRRVHRKSRILDDAEDDDD 209

Query: 510 XXXXXXXXXXXXXXXXXXXXDITSER-PNQDDDWEGENIDE-DFNXXXXXXXXXXXXDFT 337
                                 TS R  N+  DWEGE+ DE D +             F 
Sbjct: 210 DADYEEDEPDEDDPDDADFEPATSGRGANKYKDWEGEDSDEVDDSDEDIDVSDNDDLYFD 269

Query: 336 XXXXXXXXXXXGIVSKHARVLKSNTSSSQRKRGGLLFEDDE--SSAKDSDNDSDEGFSGR 163
                      G   +  R  K+ T+SS+++R    FED++  S+A+DSD++SDE F   
Sbjct: 270 KKAKGRQRGKFGPSVRSTRDCKAFTASSRQRRVKSSFEDEDENSTAEDSDSESDEDFKSL 329

Query: 162 ARGGASLRKKNIARAXXXXXXXXXXXXXXXXXSVQKVSY 46
            + G  +RK N   +                 +++KVSY
Sbjct: 330 KKRGVRVRKNNGRSSAATSFSRPSNEVRSSSRTIRKVSY 368