BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00018904
         (1235 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABA97860.1| retrotransposon protein, putative, Ty3-gypsy subc...    87   9e-15
gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris]                85   3e-14
gb|AAO37471.1| putative polyprotein [Oryza sativa Japonica Group...    84   1e-13
gb|AAT77312.1| putative polyprotein [Oryza sativa Japonica Group...    83   1e-13
gb|ABB47013.1| retrotransposon protein, putative, Ty3-gypsy subc...    82   2e-13

>gb|ABA97860.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 955

 Score = 87.0 bits (214), Expect = 9e-15
 Identities = 50/173 (28%), Positives = 80/173 (46%)
 Frame = -2

Query: 997 LQDDVAQMRNLIQNPSAGEISTESPLTRAIEKARIDRTLKTPSVDQFDGSSDPTSFLNTF 818
           + +++   +     P   + +T   + R I   R     +  S+D++DGS+DP  FL  +
Sbjct: 1   MAEEIPPTKTETVGPIMTDATTTIEIRRIIADNRRGTKFRPGSIDKYDGSTDPEEFLQVY 60

Query: 817 DGRMSFYGPSEVARCRFFSTCLKGTTLRWYNNLPPRSIDSWQALKSKFQGRFSSNDKGGK 638
              +   G  + A   +    LKG    W+ +LPP SI SW+ L  +F   F   +K   
Sbjct: 61  SIVLYAAGADDNALANYLPVVLKGFARTWFVHLPPNSISSWEDLWQQFVANFQGTNKRHA 120

Query: 637 ITASLMTMRQRSSESLRDYLTRFRAEVADIPNLIEELAINYLAAGIDKNRHAT 479
           I   L T+ Q   ESLRDY+ RF      IP + +   I    +G D++R+ T
Sbjct: 121 IEDDLHTLSQNPGESLRDYIRRFNECKNTIPEITDASVIRAFKSG-DRDRYTT 172


>gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris]
          Length = 1859

 Score = 85.1 bits (209), Expect = 3e-14
 Identities = 42/124 (33%), Positives = 73/124 (58%)
 Frame = -2

Query: 871 SVDQFDGSSDPTSFLNTFDGRMSFYGPSEVARCRFFSTCLKGTTLRWYNNLPPRSIDSWQ 692
           +++ +DGS+DP   LN F  +M+ Y       C+ F T L+   L W+++LPP SI S+ 
Sbjct: 229 TINLYDGSTDPDEHLNIFRTQMTLYTTDRTVWCKVFPTSLREGPLGWFSDLPPNSIASFD 288

Query: 691 ALKSKFQGRFSSNDKGGKITASLMTMRQRSSESLRDYLTRFRAEVADIPNLIEELAINYL 512
           AL+ KF  +++++      + SL+ ++Q   ESLR ++ RF     +I NL  E+A+++L
Sbjct: 289 ALELKFTTQYATSRPHRTSSMSLLNVKQERGESLRTFMNRFSKVCMNIRNLNPEIAMHHL 348

Query: 511 AAGI 500
            + I
Sbjct: 349 VSAI 352


>gb|AAO37471.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|41393196|gb|AAS01919.1| putative polyprotein [Oryza
           sativa Japonica Group] gi|108709171|gb|ABF96966.1|
           retrotransposon protein, putative, Ty3-gypsy subclass
           [Oryza sativa Japonica Group]
          Length = 1535

 Score = 83.6 bits (205), Expect = 1e-13
 Identities = 49/162 (30%), Positives = 75/162 (46%)
 Frame = -2

Query: 925 PLTRAIEKARIDRTLKTPSVDQFDGSSDPTSFLNTFDGRMSFYGPSEVARCRFFSTCLKG 746
           PL+  I+   I    K P V ++ G +DP  FL+ ++  +      E  + +     L G
Sbjct: 306 PLSGGIKTRPIPPQFKFPPVPRYSGETDPKEFLSIYESAIEAAHGDENTKAKVIHLALDG 365

Query: 745 TTLRWYNNLPPRSIDSWQALKSKFQGRFSSNDKGGKITASLMTMRQRSSESLRDYLTRFR 566
               WY NLP  SI SW+ L+  F   F    +  K    L+ +RQR  ES+R+Y+ RF 
Sbjct: 366 IARSWYFNLPANSIYSWEQLRDVFVLNFRGTYEEPKTQQHLLGIRQRPGESIREYMRRFS 425

Query: 565 AEVADIPNLIEELAINYLAAGIDKNRHATLLEEFFEKNPRTL 440
                + ++IE   IN  +AG+       L  +   K P+TL
Sbjct: 426 QARCQVQDIIEASVINAASAGL---LEGELTRKIANKEPQTL 464


>gb|AAT77312.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|50511410|gb|AAT77333.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 1551

 Score = 83.2 bits (204), Expect = 1e-13
 Identities = 51/167 (30%), Positives = 80/167 (47%)
 Frame = -2

Query: 916 RAIEKARIDRTLKTPSVDQFDGSSDPTSFLNTFDGRMSFYGPSEVARCRFFSTCLKGTTL 737
           R++   R    L+  +++++DGS+DP  FL  +   +   G  + A   +  T LKG+  
Sbjct: 381 RSLRDVRWPERLRPGAIEKYDGSTDPEEFLQVYSTVLYAAGADDNALANYLPTALKGSAR 440

Query: 736 RWYNNLPPRSIDSWQALKSKFQGRFSSNDKGGKITASLMTMRQRSSESLRDYLTRFRAEV 557
            W  +LPP SI SW  L  +F   F    K   I   L T+ Q S ESLR+Y+ RF    
Sbjct: 441 SWLMHLPPYSISSWIDLWQQFVANFQGTYKRHAIEDDLHTLTQNSGESLREYVRRFNECR 500

Query: 556 ADIPNLIEELAINYLAAGIDKNRHATLLEEFFEKNPRTL*SAF*VVE 416
             IP + +   I    +G+ ++R+ T  +E   +   T    F +VE
Sbjct: 501 NTIPEITDAFVIRAFKSGV-RDRYTT--QELATRRITTTRRLFEIVE 544


>gb|ABB47013.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 1475

 Score = 82.4 bits (202), Expect = 2e-13
 Identities = 54/199 (27%), Positives = 87/199 (43%), Gaps = 2/199 (1%)
 Frame = -2

Query: 961 QNPSAGEISTES--PLTRAIEKARIDRTLKTPSVDQFDGSSDPTSFLNTFDGRMSFYGPS 788
           Q  +A  +  E   PL+  I+   I    K P V ++ G +DP  FL+ ++  +      
Sbjct: 46  QQGTANRVGGEKGLPLSGGIKNRPIPPQFKFPPVARYSGETDPKEFLSIYESAIEAAHGD 105

Query: 787 EVARCRFFSTCLKGTTLRWYNNLPPRSIDSWQALKSKFQGRFSSNDKGGKITASLMTMRQ 608
           E  + +     L G    WY NLP  SI SW+ L+  F   F    +  K    L+ +RQ
Sbjct: 106 ENTKAKVIHLALDGIARSWYFNLPANSIYSWEQLRDVFVLNFQGTYEEPKTQQHLLGIRQ 165

Query: 607 RSSESLRDYLTRFRAEVADIPNLIEELAINYLAAGIDKNRHATLLEEFFEKNPRTL*SAF 428
           R  +S+R+Y+ RF      + ++ E   IN  +AG+       L  +   K P+TL    
Sbjct: 166 RPGQSIREYMRRFSQARCQVQDITEASVINAASAGL---LEGELTRKIANKEPQTL---- 218

Query: 427 *VVEHRMTLREAVGSIQSP 371
              EH + + +A   +  P
Sbjct: 219 ---EHLLRIIDAQVQVAEP 234