BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00018893
         (2150 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001234374.1| PSTVd RNA-binding protein Virp1d [Solanum ly...   424   e-116
emb|CAD43283.1| bromodomain-containing RNA-binding protein 1 [So...   419   e-114
emb|CAD43286.1| bromodomain-containing RNA-binding protein 1 [Ni...   416   e-113
emb|CAD43285.1| bromodomain-containing RNA-binding protein 2 [Ni...   416   e-113
emb|CAD43287.1| bromodomain-containing RNA-binding protein 2 [Ni...   410   e-112

>ref|NP_001234374.1| PSTVd RNA-binding protein Virp1d [Solanum lycopersicum]
            gi|10179602|gb|AAG13810.1|AF190891_1 PSTVd RNA-binding
            protein Virp1a [Solanum lycopersicum]
            gi|10179604|gb|AAG13811.1|AF190892_1 PSTVd RNA-binding
            protein Virp1b [Solanum lycopersicum]
            gi|10179606|gb|AAG13812.1|AF190893_1 PSTVd RNA-binding
            protein Virp1c [Solanum lycopersicum]
            gi|10179608|gb|AAG13813.1|AF190894_1 PSTVd RNA-binding
            protein Virp1d [Solanum lycopersicum]
            gi|13186132|emb|CAC33448.1| PSTVd RNA-biding protein,
            Virp1 [Solanum lycopersicum] gi|13186134|emb|CAC33449.1|
            PSTVd RNA-biding protein, Virp1 [Solanum lycopersicum]
            gi|13186136|emb|CAC33450.1| PSTVd RNA-biding protein,
            Virp1 [Solanum lycopersicum] gi|13186138|emb|CAC33451.1|
            PSTVd RNA-biding protein, Virp1 [Solanum lycopersicum]
          Length = 602

 Score =  424 bits (1090), Expect = e-116
 Identities = 279/586 (47%), Positives = 334/586 (56%), Gaps = 65/586 (11%)
 Frame = +2

Query: 83   MASAVLQNRNESSL-------GKFMGKKLXXXXXXXXXXXXXRKQSKPKRKQYHQL---- 229
            MASAVL +RNESS        G FMGK                   K K+KQ+H      
Sbjct: 1    MASAVLASRNESSWAQSGGAGGGFMGKT---PYSHTQLNPNHNPNPKKKQKQFHHTSNGR 57

Query: 230  ---DVPIVSQDVSEDAYSYNHRGIEGNYAKGDGEGFNCCDYVNFNVSRCSKSXXXXXXXX 400
               D P V+Q  S+DAYS+N R IE      + +G N   Y+ FNV   +K+        
Sbjct: 58   HMDDSPAVTQTASDDAYSFNQRPIESTT---NVDGLNFGGYLTFNVVSYNKAEVNELRSR 114

Query: 401  XXXXXQKVRSLNDRIQIGGFS-------GKNKKLSGQKR------------LISGVLN-- 517
                 +++R+L DRI+ G  S       GK+KK SG KR            L +GV N  
Sbjct: 115  LMAEVEQIRNLKDRIESGQLSTTNPRSQGKSKKQSGNKRPTPSGSSKDLKKLPNGVENRN 174

Query: 518  -GDGGDYDG--------LMKMCKQILTKLMRNRISRVFNKPVDAVGLGLYDYHQIVKEPM 670
             G+ G  DG        +MK C+QIL KLM+++   +FN PVDA  LGL+DYHQI+K PM
Sbjct: 175  FGNPGGVDGVKAIGTESMMKECRQILAKLMKHKNGWIFNIPVDAEALGLHDYHQIIKRPM 234

Query: 671  DLGTVKMNLSKNLYSLPSEFASDVRLTFNNAMLYNPKTDEVHRMAAQLLSEFEDMFGPVQ 850
            DLGTVK NL+KN Y  P EFA+DVRLTFNNA+LYNPKTD+V+  A QLL  FEDMF P+Q
Sbjct: 235  DLGTVKSNLAKNFYPSPFEFAADVRLTFNNALLYNPKTDQVNAFAEQLLGRFEDMFRPLQ 294

Query: 851  EKLDSNVEKDDGVRIGNDDWH------GSSWNEISTPERPKKPKTNLVSSIPTMKPERVP 1012
            +K++    K +G   G  D+H      GSSWN I TPER KKPK   V +I + K ER+ 
Sbjct: 295  DKMN----KLEG---GRRDYHPVDELQGSSWNHIPTPERVKKPKPTPVPNI-SKKQERMQ 346

Query: 1013 EPLIQSSASNRS-----NSDPRSMQSPVLTPSPVRAQPVKPTGSVKGAASTLKQPKPKAK 1177
                 SSAS  S      + P   QSP+ TPSPVRA   KP  + K   +  KQPKP+AK
Sbjct: 347  N---HSSASTPSLPVPPPNPPARQQSPLSTPSPVRAPAAKPQSAAK-VPTMGKQPKPRAK 402

Query: 1178 DPNKRAMTMEEKQKLGVGLQNLPEEKMPQLVQIIRKRNERLAQEGDEIELDIEALDTETL 1357
            DPNKR M MEEK KLGVGLQ+LP+EKMPQLVQIIRKRNE LAQ+GDEIELDIEALDTETL
Sbjct: 403  DPNKREMNMEEKHKLGVGLQSLPQEKMPQLVQIIRKRNEHLAQDGDEIELDIEALDTETL 462

Query: 1358 WELDRFVTNWKKLASKTKRQALMENF---------STAPMIAPDTDEALASDIN-XXXXX 1507
            WELDRFVTNWKK+ SKTKRQALM N          S A     + D    S+ N      
Sbjct: 463  WELDRFVTNWKKMVSKTKRQALMNNLGPPSASAAASAATTSVAEADGPTTSEKNDSFKKA 522

Query: 1508 XXXXXXXXXXXXXXXMPESSFLPVEIEKDGGANVRDNGNMNGNGNA 1645
                            P + F PVEIEKD G   RD  N  G G++
Sbjct: 523  KKGDVGEEDVEIEDDEPATHFPPVEIEKDEGGG-RDQENGGGGGSS 567


>emb|CAD43283.1| bromodomain-containing RNA-binding protein 1 [Solanum tuberosum]
          Length = 602

 Score =  419 bits (1077), Expect = e-114
 Identities = 277/580 (47%), Positives = 331/580 (57%), Gaps = 67/580 (11%)
 Frame = +2

Query: 83   MASAVLQNRNESSL-------GKFMGKKLXXXXXXXXXXXXXRKQSKPKRKQYHQL---- 229
            MASAVL +RNESS        G FMGK                   K K+KQ+H      
Sbjct: 1    MASAVLASRNESSWAQSGGAGGGFMGKT---PFSHTQLNPNHNPNPKKKQKQFHHTSNGR 57

Query: 230  ---DVPIVSQDVSEDAYSYNHRGIEGNYAKGDGEGFNCCDYVNFNVSRCSKSXXXXXXXX 400
               + P V+Q  S+DAYS+N R IE      + +G N   Y+ FNV   +K         
Sbjct: 58   HIDESPAVTQTASDDAYSFNQRPIESTT---NVDGLNFGGYLTFNVVSYNKGEVNELRSR 114

Query: 401  XXXXXQKVRSLNDRIQIGGFS-------GKNKKLSGQKR------------LISGVLN-- 517
                 +++R+L DRI+ G  S       GK+KKLSG KR            L +GV N  
Sbjct: 115  LLAEVEQIRNLKDRIESGQLSTTNPRSQGKSKKLSGNKRPTPSGSSKDPKKLPNGVENRN 174

Query: 518  -----GDGG----DYDGLMKMCKQILTKLMRNRISRVFNKPVDAVGLGLYDYHQIVKEPM 670
                 G GG      + +MK C+QIL KLM+++   +FN PVDA  LGL+DYHQI+K P+
Sbjct: 175  FGNPVGGGGVKAIGTESMMKECRQILAKLMKHKNGWIFNIPVDAEALGLHDYHQIIKRPI 234

Query: 671  DLGTVKMNLSKNLYSLPSEFASDVRLTFNNAMLYNPKTDEVHRMAAQLLSEFEDMFGPVQ 850
            DLGTVK NL+KN Y  P EFA+DVRLTFNNA+LYNPKTD+V+  A QLL  FEDMF P+Q
Sbjct: 235  DLGTVKSNLAKNFYPSPFEFAADVRLTFNNALLYNPKTDQVNGFAEQLLGRFEDMFRPLQ 294

Query: 851  EKLDSNVEKDDGVRIGNDDWH------GSSWNEISTPERPKKPKTNLVSSIPTMKPERVP 1012
            +K++    K +G   G  D+H      GSSWN I TPER KKPK   V  I + K ER+ 
Sbjct: 295  DKMN----KLEG---GRRDYHPVDELQGSSWNHIPTPERVKKPKATPVPHI-SKKQERMQ 346

Query: 1013 EPLIQSSASNRS-----NSDPRSMQSPVLTPSPVRAQPVKPTGSVKGAASTLKQPKPKAK 1177
                 SSAS  S      + P   QSP+ TPSPVRA P KP  + K  A   KQPKP+AK
Sbjct: 347  N---HSSASTPSLPVPPPNPPARQQSPLSTPSPVRAPPSKPESAAKVPAMG-KQPKPRAK 402

Query: 1178 DPNKRAMTMEEKQKLGVGLQNLPEEKMPQLVQIIRKRNERLAQEGDEIELDIEALDTETL 1357
            DPNKR M MEEK KLGVGLQ+LP+EKMPQLVQIIRKRNE LAQ+GDEIELDIEALDTETL
Sbjct: 403  DPNKRVMNMEEKHKLGVGLQSLPQEKMPQLVQIIRKRNEHLAQDGDEIELDIEALDTETL 462

Query: 1358 WELDRFVTNWKKLASKTKRQALMEN----------FSTAPMIAPDTDEALASDIN-XXXX 1504
            WELDRFVTNWKK+ SKTKRQALM N           S A     + D    S+ N     
Sbjct: 463  WELDRFVTNWKKMVSKTKRQALMINNLGPPSASAAASAATTSVAEADGPTTSEKNDSFKK 522

Query: 1505 XXXXXXXXXXXXXXXXMPESSFLPVEIEKD-GGANVRDNG 1621
                             P + F PVEIEKD GG   ++NG
Sbjct: 523  PKKGDVGEEDVEIEDDEPATHFPPVEIEKDEGGGRDQENG 562


>emb|CAD43286.1| bromodomain-containing RNA-binding protein 1 [Nicotiana tabacum]
          Length = 617

 Score =  416 bits (1070), Expect = e-113
 Identities = 274/600 (45%), Positives = 334/600 (55%), Gaps = 79/600 (13%)
 Frame = +2

Query: 83   MASAVLQNRNESSL-------GKFMGKKLXXXXXXXXXXXXXRKQSKPKRKQYHQL---- 229
            MA AVL +RNESS        G FMGK                   K K+KQ+H      
Sbjct: 1    MAFAVLASRNESSWAQSGGAGGGFMGKT---PYSHTHLNPNSNPNPKKKQKQFHHASNGR 57

Query: 230  ---DVPIVSQDVSEDAYSYNHRGIEGNYAKGDGEGFNCCDYVNFNVSRCSKSXXXXXXXX 400
               + P V+Q  S+DAYS+N R IE +    + +G N   Y+ +NV+  +K+        
Sbjct: 58   HNDESPAVTQTASDDAYSFNQRPIESST---NVDGLNLGGYMTYNVASYNKTELHELRSR 114

Query: 401  XXXXXQKVRSLNDRIQIGGFS-------GKNKKLSGQKR------------LISGVLN-- 517
                 +++R+L DRI+ G  S       GK+KKLSG KR            L++GV N  
Sbjct: 115  LVAELEQIRNLKDRIESGQLSTSNPRSHGKSKKLSGNKRPTPSGSSKDRKKLLNGVDNRN 174

Query: 518  ----GDGGDYDGL------MKMCKQILTKLMRNRISRVFNKPVDAVGLGLYDYHQIVKEP 667
                G GG   G+      MK C+Q+L KLM+++   +FN PVDA  +GL+DYHQI+K P
Sbjct: 175  FGNPGGGGGVKGIIGMENMMKECRQVLAKLMKHKSGWIFNTPVDAKAMGLHDYHQIIKRP 234

Query: 668  MDLGTVKMNLSKNLYSLPSEFASDVRLTFNNAMLYNPKTDEVHRMAAQLLSEFEDMFGPV 847
            MDLGTVK NL  N Y  P EFA+DVRLTFNNA+LYNPKTD+VH  A QLL+ FEDMF P+
Sbjct: 235  MDLGTVKSNLINNFYPTPFEFAADVRLTFNNALLYNPKTDQVHGFAEQLLARFEDMFRPI 294

Query: 848  QEKL---DSNVEKDDGVRIGNDDWHGSSWNEISTPERPKKPKTNLVSSIPTMKPERVPEP 1018
            Q+KL   D    + D   I  D+  GSSWN I TPER KKPK      I + K ER+ + 
Sbjct: 295  QDKLNKLDGGTGRRDFRAI--DELQGSSWNHIPTPERVKKPKPTPAPHI-SKKQERMMQN 351

Query: 1019 LIQSSASNRS--------NSDPRSMQSPVLTPSPVRAQPV-KPTGSVKGAASTL-KQPKP 1168
               SSAS  S        N      QSP+ TPSPVRA P  KP  SV      + KQPKP
Sbjct: 352  --HSSASTPSLPVQQPPDNPPVVRQQSPLSTPSPVRAPPAAKPQSSVAAKVPPMGKQPKP 409

Query: 1169 KAKDPNKRAMTMEEKQKLGVGLQNLPEEKMPQLVQIIRKRNERLAQEGDEIELDIEALDT 1348
            +AKDPNKR M+MEEK KLGVGLQ+LP+EKMPQLVQIIRKRNE LAQ+GDEIELDIEALDT
Sbjct: 410  RAKDPNKREMSMEEKHKLGVGLQSLPQEKMPQLVQIIRKRNEHLAQDGDEIELDIEALDT 469

Query: 1349 ETLWELDRFVTNWKKLASKTKRQALMENFSTAPMIA----------------PDTDEALA 1480
            ETLWELDRFVTNWKK+ SKTKRQAL+ N    P  +                P T E   
Sbjct: 470  ETLWELDRFVTNWKKMVSKTKRQALINNLGQPPSASAAASAATTTSVAEADGPSTSE--K 527

Query: 1481 SDINXXXXXXXXXXXXXXXXXXXXMPESSFLPVEIEKD-----GGANVRDNGNMNGNGNA 1645
            +D                       P + F PVEIE D     GG  VRDN   + + ++
Sbjct: 528  NDSFKKPKKGGDAGDEDDVEIEDDEPATHFPPVEIEIDKDEGGGGGQVRDNNASSSSSSS 587


>emb|CAD43285.1| bromodomain-containing RNA-binding protein 2 [Nicotiana benthamiana]
          Length = 613

 Score =  416 bits (1068), Expect = e-113
 Identities = 273/584 (46%), Positives = 330/584 (56%), Gaps = 70/584 (11%)
 Frame = +2

Query: 83   MASAVLQNRNESSL-------GKFMGKKLXXXXXXXXXXXXXRKQSKPKRKQYHQL---- 229
            MASAVL +RNESS        G FMGK                   K K+KQ+H      
Sbjct: 1    MASAVLASRNESSWAQSGGAGGGFMGKT---PYSHTHLNPNSNPNPKKKQKQFHHASNGC 57

Query: 230  ---DVPIVSQDVSEDAYSYNHRGIEGNYAKGDGEGFNCCDYVNFNVSRCSKSXXXXXXXX 400
               ++P V+Q  S+DAYS+N R IE +    + +G N   Y+ +NV+  SK+        
Sbjct: 58   HNDELPAVTQTASDDAYSFNQRPIESS---ANVDGLNLGGYMTYNVASYSKTELHDLRSR 114

Query: 401  XXXXXQKVRSLNDRIQIGGFS-------GKNKKLSGQKR------------LISGVLN-- 517
                 +++R+L DRI+ G  S       GK+KKLSG KR            L +GV N  
Sbjct: 115  LVAELEQIRNLKDRIESGQLSTSNPRSHGKSKKLSGNKRPTPSGSSKDPKKLPNGVDNRN 174

Query: 518  ----GDGG-----DYDGLMKMCKQILTKLMRNRISRVFNKPVDAVGLGLYDYHQIVKEPM 670
                G GG       + +MK C+Q+L KLM+++   +FN PVDA  LGL+DY QI+K PM
Sbjct: 175  FGNPGGGGVKGIIGMENMMKECRQVLGKLMKHKSGWIFNTPVDAEALGLHDYRQIIKRPM 234

Query: 671  DLGTVKMNLSKNLYSLPSEFASDVRLTFNNAMLYNPKTDEVHRMAAQLLSEFEDMFGPVQ 850
            DLGTVK NLS NLY  P EFA+DVRLTFNNA+LYNPKTD+VH  A  LL+ FEDMF P Q
Sbjct: 235  DLGTVKSNLSNNLYPTPFEFAADVRLTFNNALLYNPKTDQVHVFAELLLTRFEDMFRPFQ 294

Query: 851  EKLDSNVEKDDGVRIGN--DDWHGSSWNEISTPERPKKPKTNLVSSIPTMKPERVPEPLI 1024
            +KL+  ++   G R  +  D+  GSSWN I TPER KKPK      I + K ER+ +   
Sbjct: 295  DKLNK-LDGGSGRRDFHAIDELQGSSWNHIPTPERVKKPKPTPAPHI-SKKQERMMQN-- 350

Query: 1025 QSSASNRS--------NSDPRSMQSPVLTPSPVRAQPV-KPTGSVKGAASTL-KQPKPKA 1174
             SSAS  S        N      QSP+ TPSPVRA P  KP  SV      + KQPKP+A
Sbjct: 351  HSSASTPSLPVQQPPDNPPVVQQQSPLSTPSPVRAPPAAKPQSSVAAKVPPMEKQPKPRA 410

Query: 1175 KDPNKRAMTMEEKQKLGVGLQNLPEEKMPQLVQIIRKRNERLAQEGDEIELDIEALDTET 1354
            KDPNKR M+MEEK KLGVGLQ+LP+EKMPQLVQIIRKRNE LAQ+GDEIELDIEALDTET
Sbjct: 411  KDPNKREMSMEEKHKLGVGLQSLPQEKMPQLVQIIRKRNEHLAQDGDEIELDIEALDTET 470

Query: 1355 LWELDRFVTNWKKLASKTKRQALMENFSTAPMIAPDTDEALAS-------------DINX 1495
            LWELDRFVTNWKK+ SKTKRQAL+ N    P  +     A  S             D   
Sbjct: 471  LWELDRFVTNWKKMVSKTKRQALINNLGQPPSASAAASAATTSVAEADGPSTSEKNDSFK 530

Query: 1496 XXXXXXXXXXXXXXXXXXXMPESSFLPVEIEKD-GGANVRDNGN 1624
                                P + F PVEI+KD GG   RD  N
Sbjct: 531  KPKKGGDAGDEDDVEIEDDEPATQFPPVEIDKDEGGGGGRDPDN 574


>emb|CAD43287.1| bromodomain-containing RNA-binding protein 2 [Nicotiana tabacum]
          Length = 616

 Score =  410 bits (1054), Expect = e-112
 Identities = 271/598 (45%), Positives = 333/598 (55%), Gaps = 77/598 (12%)
 Frame = +2

Query: 83   MASAVLQNRNESSL-------GKFMGKKLXXXXXXXXXXXXXRKQSKPKRKQYHQL---- 229
            MASAVL +RNESS        G FMGK                   K K+KQ+H      
Sbjct: 1    MASAVLASRNESSWAQSGGAGGGFMGKT---PYSHTQLNPNSNPNPKKKQKQFHHASNGR 57

Query: 230  ---DVPIVSQDVSEDAYSYNHRGIEGNYAKGDGEGFNCCDYVNFNVSRCSKSXXXXXXXX 400
               + P V+Q  S+DAYS+N R IE +    + +G N   Y+ +N +  +K+        
Sbjct: 58   LTDESPAVTQTASDDAYSFNQRPIESST---NVDGLNLGGYMTYNXASYNKTELHELRSR 114

Query: 401  XXXXXQKVRSLNDRIQIGGFS-------GKNKKLSGQKR------------LISGVLNGD 523
                 +++R+L DRI+ G  S       GK+KKLSG KR            L +GV N +
Sbjct: 115  LVAELEQIRNLKDRIESGQLSTSNPRSHGKSKKLSGNKRPTPSGSSKDPKKLPNGVDNRN 174

Query: 524  GGDYDG-----------LMKMCKQILTKLMRNRISRVFNKPVDAVGLGLYDYHQIVKEPM 670
             G+  G           +MK C Q+L KLM+++   +FN PVDA  LGL+DYHQI+K P 
Sbjct: 175  FGNPGGGGVKGIIGKENMMKECTQVLGKLMKHKSGWIFNTPVDAEALGLHDYHQIIKRPX 234

Query: 671  DLGTVKMNLSKNLYSLPSEFASDVRLTFNNAMLYNPKTDEVHRMAAQLLSEFEDMFGPVQ 850
            DLGT K NLS N Y  P EFA+DVRLTFNNA+LYNPKTD+VH  A QLL+ FEDMF P+Q
Sbjct: 235  DLGTXKSNLSNNFYPTPFEFAADVRLTFNNALLYNPKTDQVHGFAEQLLARFEDMFRPIQ 294

Query: 851  EKLDSNVEKDDGVRIGN--DDWHGSSWNEISTPERPKKPKTNLVSSIPTMKPERVPEPLI 1024
            +KL+  ++   G R  +  D+  GSSWN I TPER KKPK      I + K ER+ +   
Sbjct: 295  DKLNK-LDGGSGRRDFHAIDELQGSSWNHIPTPERVKKPKPTPAPHI-SKKQERMMQN-- 350

Query: 1025 QSSASNRS--------NSDPRSMQSPVLTPSPVRAQPV-KPTGSVKGAASTL-KQPKPKA 1174
             SSAS  S        N      QSP+ TPSPVRA P  KP  SV      + KQPKP+A
Sbjct: 351  HSSASTPSLPVQQPPDNPPVVRQQSPLSTPSPVRAPPAAKPQSSVAAKVPPMGKQPKPRA 410

Query: 1175 KDPNKRAMTMEEKQKLGVGLQNLPEEKMPQLVQIIRKRNERLAQEGDEIELDIEALDTET 1354
            KDPNKR M+MEEK KLGVGLQ+LP+EKMPQLVQIIRKRNE LAQ+GDEIELDIEALDTET
Sbjct: 411  KDPNKREMSMEEKHKLGVGLQSLPQEKMPQLVQIIRKRNEHLAQDGDEIELDIEALDTET 470

Query: 1355 LWELDRFVTNWKKLASKTKRQALMENFSTAPMIA----------------PDTDEALASD 1486
            LWELDRFVTNWKK+ SKTKRQAL+ N    P  +                P T E   +D
Sbjct: 471  LWELDRFVTNWKKMVSKTKRQALINNLGQPPSASAAASAATTTSVAEADGPSTSE--KND 528

Query: 1487 INXXXXXXXXXXXXXXXXXXXXMPESSFLPVEIEKD-----GGANVRDNGNMNGNGNA 1645
                                   P + F PVEIE D     GG  VRDN   + + ++
Sbjct: 529  SFKKPKKGGDAGDEDDVEIEDDEPATHFPPVEIEIDKDEGGGGGQVRDNNASSSSSSS 586