BLASTX nr result
ID: Cnidium21_contig00018877
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cnidium21_contig00018877
(1171 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002863522.1| hypothetical protein ARALYDRAFT_917015 [Arab... 92 7e-25
emb|CAG03415.1| unnamed protein product [Tetraodon nigroviridis] 85 5e-23
ref|XP_003967335.1| PREDICTED: DNA-directed RNA polymerase III s... 85 5e-23
ref|XP_001755844.1| predicted protein [Physcomitrella patens sub... 84 6e-23
ref|XP_690811.2| PREDICTED: DNA-directed RNA polymerase III subu... 84 1e-22
>ref|XP_002863522.1| hypothetical protein ARALYDRAFT_917015 [Arabidopsis lyrata subsp.
lyrata] gi|297309357|gb|EFH39781.1| hypothetical protein
ARALYDRAFT_917015 [Arabidopsis lyrata subsp. lyrata]
Length = 1165
Score = 92.0 bits (227), Expect(2) = 7e-25
Identities = 75/223 (33%), Positives = 105/223 (47%), Gaps = 11/223 (4%)
Frame = +2
Query: 11 PKEEGGAMDILREIFLCNIPVDGNNFCKKCIFVAVMVRRIVEAHYN---IVEAHYIYN-I 178
P+++G A+ ILR++FL ++PV NNF +KC +V VM+RR++EA N + + Y+ N
Sbjct: 309 PEKDGRALYILRDLFLAHVPVRDNNFRQKCFYVGVMLRRMIEAMLNKDSMDDKDYVGNKR 368
Query: 179 LEADSNKEILDDLDLFKDMNEEAKKFHDSRLEKHPKIN-------ISTCIDSTRITNGIV 337
LE L DLFK M EA K D+ L K + + ++T I+ G+
Sbjct: 369 LELSGQLMSLLFEDLFKTMLSEAIKKVDAILSKPSRASRFDFSQYLTTGDSQNTISVGLE 428
Query: 338 LALSTGNWNVKRSRMHLKGMTQVLHSLLAHLFXXXXXXXXXXXXXXXXXSHFEKQGGLS* 517
LSTGN+++KR RMH KGMTQVL
Sbjct: 429 RTLSTGNFDIKRFRMHRKGMTQVL------------------------------------ 452
Query: 518 IYISEQVIPRLSFIATLSSLRRILQQDEALGNVTGCRSLHLSQ 646
RLSFI +L + +I Q E V+G RSL SQ
Sbjct: 453 --------TRLSFIGSLGFITKISPQFEKSRKVSGPRSLQPSQ 487
Score = 49.3 bits (116), Expect(2) = 7e-25
Identities = 18/37 (48%), Positives = 30/37 (81%)
Frame = +3
Query: 765 IFCPIETPQGDACGLVKHLALMSDITIHHEETPIISL 875
+ CP +TP+G++CGLVK+LALM+ +T EE P++++
Sbjct: 490 MLCPCDTPEGESCGLVKNLALMTHVTTDEEEGPLVAM 526
>emb|CAG03415.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1171
Score = 85.1 bits (209), Expect(2) = 5e-23
Identities = 68/211 (32%), Positives = 97/211 (45%), Gaps = 5/211 (2%)
Frame = +2
Query: 29 AMDILREIFLCNIPVDGNNFCKKCIFVAVMVRRIVEAHY-NIVEAHYIYNILEADSNKEI 205
A ++L + L ++PV NF KCI++AVMVRR++ A N V+ Y + ++
Sbjct: 337 ARELLASLILTHVPVKEFNFRAKCIYLAVMVRRVILAQGDNKVDDRDYYGNKRLELAGQL 396
Query: 206 LDDL--DLFKDMNEEAKKFHDSRLEKH--PKINISTCIDSTRITNGIVLALSTGNWNVKR 373
L L DLFK N E KK D + K + ++ + +ITNG+V A+STGNW++KR
Sbjct: 397 LSLLFEDLFKKFNSELKKIADQIIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKR 456
Query: 374 SRMHLKGMTQVLHSLLAHLFXXXXXXXXXXXXXXXXXSHFEKQGGLS*IYISEQVIPRLS 553
+M +G+TQVL RLS
Sbjct: 457 FKMDRQGVTQVL--------------------------------------------SRLS 472
Query: 554 FIATLSSLRRILQQDEALGNVTGCRSLHLSQ 646
FI+ L + RI Q E V+G RSL SQ
Sbjct: 473 FISALGMMTRISSQFEKTRKVSGPRSLQPSQ 503
Score = 50.1 bits (118), Expect(2) = 5e-23
Identities = 22/37 (59%), Positives = 29/37 (78%)
Frame = +3
Query: 765 IFCPIETPQGDACGLVKHLALMSDITIHHEETPIISL 875
+ CP +TP+G+ACGLVK+LALM+ IT E+ PII L
Sbjct: 506 MLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKL 542
>ref|XP_003967335.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like
[Takifugu rubripes]
Length = 1132
Score = 85.1 bits (209), Expect(2) = 5e-23
Identities = 68/211 (32%), Positives = 97/211 (45%), Gaps = 5/211 (2%)
Frame = +2
Query: 29 AMDILREIFLCNIPVDGNNFCKKCIFVAVMVRRIVEAHY-NIVEAHYIYNILEADSNKEI 205
A ++L + L ++PV NF KCI++AVMVRR++ A N V+ Y + ++
Sbjct: 308 ARELLASLILTHVPVKEFNFRAKCIYLAVMVRRVILAQGGNKVDDRDYYGNKRLELAGQL 367
Query: 206 LDDL--DLFKDMNEEAKKFHDSRLEKH--PKINISTCIDSTRITNGIVLALSTGNWNVKR 373
L L DLFK N E KK D + K + ++ + +ITNG+V A+STGNW++KR
Sbjct: 368 LSLLFEDLFKKFNSELKKIADQIIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKR 427
Query: 374 SRMHLKGMTQVLHSLLAHLFXXXXXXXXXXXXXXXXXSHFEKQGGLS*IYISEQVIPRLS 553
+M +G+TQVL RLS
Sbjct: 428 FKMDRQGVTQVL--------------------------------------------SRLS 443
Query: 554 FIATLSSLRRILQQDEALGNVTGCRSLHLSQ 646
FI+ L + RI Q E V+G RSL SQ
Sbjct: 444 FISALGMMTRISSQFEKTRKVSGPRSLQPSQ 474
Score = 50.1 bits (118), Expect(2) = 5e-23
Identities = 22/37 (59%), Positives = 29/37 (78%)
Frame = +3
Query: 765 IFCPIETPQGDACGLVKHLALMSDITIHHEETPIISL 875
+ CP +TP+G+ACGLVK+LALM+ IT E+ PII L
Sbjct: 477 MLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKL 513
>ref|XP_001755844.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693163|gb|EDQ79517.1| predicted protein
[Physcomitrella patens subsp. patens]
Length = 1135
Score = 84.0 bits (206), Expect(2) = 6e-23
Identities = 70/213 (32%), Positives = 97/213 (45%), Gaps = 7/213 (3%)
Frame = +2
Query: 29 AMDILREIFLCNIPVDGNNFCKKCIFVAVMVRRIVEAHYN---IVEAHYIYNI-LEADSN 196
A DIL + L ++PV +F KCI++AV++R+++EA N + + Y+ N LE
Sbjct: 294 ARDILATVVLAHVPVHQFDFRAKCIYLAVIIRKMLEAMLNREAVDDMDYVGNKRLELAGQ 353
Query: 197 KEILDDLDLFKDMNEEAKKFHDSRLEK---HPKINISTCIDSTRITNGIVLALSTGNWNV 367
L DLFK MN E KK D+ L K + +I I +TNG+ A+S+GNW V
Sbjct: 354 LLSLLFEDLFKRMNAELKKSMDATLSKANRSTQFDIIKLIRPDTLTNGLEHAISSGNWAV 413
Query: 368 KRSRMHLKGMTQVLHSLLAHLFXXXXXXXXXXXXXXXXXSHFEKQGGLS*IYISEQVIPR 547
KR +M KG+TQ V+ R
Sbjct: 414 KRFKMDRKGVTQ--------------------------------------------VVSR 429
Query: 548 LSFIATLSSLRRILQQDEALGNVTGCRSLHLSQ 646
LSFIA L + RI Q E V+G R+L SQ
Sbjct: 430 LSFIAALGHMTRISSQFEKTRKVSGPRALQPSQ 462
Score = 50.8 bits (120), Expect(2) = 6e-23
Identities = 20/37 (54%), Positives = 29/37 (78%)
Frame = +3
Query: 765 IFCPIETPQGDACGLVKHLALMSDITIHHEETPIISL 875
+ CP +TP+G+ACGLVK+L+LM+ +T EE P+I L
Sbjct: 465 MLCPCDTPEGEACGLVKNLSLMTHVTTDEEEAPLIEL 501
>ref|XP_690811.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 2
[Danio rerio]
Length = 1130
Score = 84.0 bits (206), Expect(2) = 1e-22
Identities = 68/211 (32%), Positives = 96/211 (45%), Gaps = 5/211 (2%)
Frame = +2
Query: 29 AMDILREIFLCNIPVDGNNFCKKCIFVAVMVRRIVEAHY-NIVEAHYIYNILEADSNKEI 205
A ++L L ++PV NF KCI++AVMVRR++ A N V+ Y + ++
Sbjct: 306 ARELLASTILTHVPVKEFNFRAKCIYLAVMVRRVILAQGDNKVDDRDYYGNKRLELAGQL 365
Query: 206 LDDL--DLFKDMNEEAKKFHDSRLEKH--PKINISTCIDSTRITNGIVLALSTGNWNVKR 373
L L DLFK N E KK D + K + ++ + +ITNG+V A+STGNW++KR
Sbjct: 366 LSLLFEDLFKKFNSELKKIADQIIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKR 425
Query: 374 SRMHLKGMTQVLHSLLAHLFXXXXXXXXXXXXXXXXXSHFEKQGGLS*IYISEQVIPRLS 553
+M +G+TQVL RLS
Sbjct: 426 FKMDRQGVTQVL--------------------------------------------SRLS 441
Query: 554 FIATLSSLRRILQQDEALGNVTGCRSLHLSQ 646
FI+ L + RI Q E V+G RSL SQ
Sbjct: 442 FISALGMMTRISSQFEKTRKVSGPRSLQPSQ 472
Score = 50.1 bits (118), Expect(2) = 1e-22
Identities = 22/37 (59%), Positives = 29/37 (78%)
Frame = +3
Query: 765 IFCPIETPQGDACGLVKHLALMSDITIHHEETPIISL 875
+ CP +TP+G+ACGLVK+LALM+ IT E+ PII L
Sbjct: 475 MLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKL 511