BLASTX nr result
ID: Cnidium21_contig00018808
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cnidium21_contig00018808
(532 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containi... 99 8e-22
ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containi... 99 8e-22
ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containi... 96 4e-18
ref|XP_002327681.1| predicted protein [Populus trichocarpa] gi|2... 86 5e-18
ref|NP_001058441.1| Os06g0694300 [Oryza sativa Japonica Group] g... 79 1e-16
>ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 98.6 bits (244), Expect(2) = 8e-22
Identities = 60/127 (47%), Positives = 77/127 (60%), Gaps = 17/127 (13%)
Frame = -2
Query: 510 PWNHACMVDLHGMSRCLEGALQIYQNY----------AKICLCRIHVDPDIAATAANSLF 361
P ++ACMVDL G + CLE AL + + A + CRIH +PDIA AAN LF
Sbjct: 414 PDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELF 473
Query: 360 KLKTNDIGNYILLSNISASSGR*KDVARVERQ-*G*GLTKNPACSIV------IHEFLAG 202
KL+ N IGNYILLSNI AS+GR ++V+++ + G KNP CS IH+F AG
Sbjct: 474 KLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIHDFFAG 533
Query: 201 NLIHPRS 181
+ HPRS
Sbjct: 534 DTTHPRS 540
Score = 30.0 bits (66), Expect(2) = 8e-22
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = -3
Query: 92 MND*EKMHILKAHIEKLVLAYELLTVASG 6
+ D EK IL +H EKL LAY LL +G
Sbjct: 570 LTDDEKERILMSHSEKLALAYGLLCTEAG 598
>ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 98.6 bits (244), Expect(2) = 8e-22
Identities = 60/127 (47%), Positives = 77/127 (60%), Gaps = 17/127 (13%)
Frame = -2
Query: 510 PWNHACMVDLHGMSRCLEGALQIYQNY----------AKICLCRIHVDPDIAATAANSLF 361
P ++ACMVDL G + CLE AL + + A + CRIH +PDIA AAN LF
Sbjct: 414 PDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELF 473
Query: 360 KLKTNDIGNYILLSNISASSGR*KDVARVERQ-*G*GLTKNPACSIV------IHEFLAG 202
KL+ N IGNYILLSNI AS+GR ++V+++ + G KNP CS IH+F AG
Sbjct: 474 KLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIHDFFAG 533
Query: 201 NLIHPRS 181
+ HPRS
Sbjct: 534 DTTHPRS 540
Score = 30.0 bits (66), Expect(2) = 8e-22
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = -3
Query: 92 MND*EKMHILKAHIEKLVLAYELLTVASG 6
+ D EK IL +H EKL LAY LL +G
Sbjct: 570 LTDDEKERILMSHSEKLALAYGLLCTEAG 598
>ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Vitis vinifera]
Length = 647
Score = 95.5 bits (236), Expect = 4e-18
Identities = 69/156 (44%), Positives = 91/156 (58%), Gaps = 18/156 (11%)
Frame = -2
Query: 504 NHACMVDLHGMSRCLEGALQIYQNY----------AKICLCRIHVDPDIAATAANSLFKL 355
++ACMVDL G + LE AL + + A + CRIH +PD+A AA+ LF+L
Sbjct: 413 HYACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLGACRIHGNPDMAQIAASHLFEL 472
Query: 354 KTNDIGNYILLSNISASSGR*KDVARVER-Q*G*GLTKNPACSIV------IHEFLAGNL 196
+ N IGNYILLSNI AS+GR DV++V + GL KNP CS V IHEF AG++
Sbjct: 473 EPNGIGNYILLSNIYASAGRWDDVSKVRKLMRAKGLKKNPGCSWVEGKKGIIHEFFAGDM 532
Query: 195 IHPRSYQR*RSWK-LSG*FKVP*THEQPVLSSVPYD 91
HP+S + ++ + L K QP LSSV YD
Sbjct: 533 SHPKSREIKQALEDLLDRLKY--LGYQPNLSSVAYD 566
>ref|XP_002327681.1| predicted protein [Populus trichocarpa] gi|222836766|gb|EEE75159.1|
predicted protein [Populus trichocarpa]
Length = 654
Score = 85.5 bits (210), Expect(2) = 5e-18
Identities = 55/125 (44%), Positives = 73/125 (58%), Gaps = 17/125 (13%)
Frame = -2
Query: 504 NHACMVDLHGMSRCLEGALQIYQNY----------AKICLCRIHVDPDIAATAANSLFKL 355
++ CMVDL G + L+ A ++ + A + CRIH PDIAA AAN LF+L
Sbjct: 420 HYTCMVDLLGRAGRLQEAHELVKTMPIEPHGGVWGALLGACRIHKSPDIAAIAANHLFEL 479
Query: 354 KTNDIGNYILLSNISASSGR*KDVARVER-Q*G*GLTKNPACSIV------IHEFLAGNL 196
+ IGNYILL+NI AS GR DV+ V + GL KNPA S + +HEF +G++
Sbjct: 480 EPYCIGNYILLANIYASCGRWNDVSTVRKLMRTRGLRKNPAFSWIESEKGMVHEFFSGDM 539
Query: 195 IHPRS 181
HPRS
Sbjct: 540 THPRS 544
Score = 30.4 bits (67), Expect(2) = 5e-18
Identities = 20/67 (29%), Positives = 32/67 (47%)
Frame = -3
Query: 203 AI*SIRDRIKDKGVGNCLDNLKFHRHTSSQF*VLFPMMND*EKMHILKAHIEKLVLAYEL 24
A+ + DR++ KG L ++ + +ND +K IL H EKL LA+ L
Sbjct: 550 ALEDLLDRLEAKGYQPHLSSVSYD-------------VNDEDKRRILMTHSEKLALAFGL 596
Query: 23 LTVASGS 3
++ GS
Sbjct: 597 ISTIPGS 603
>ref|NP_001058441.1| Os06g0694300 [Oryza sativa Japonica Group]
gi|53791823|dbj|BAD53889.1| selenium-binding
protein-like [Oryza sativa Japonica Group]
gi|53792844|dbj|BAD53877.1| selenium-binding
protein-like [Oryza sativa Japonica Group]
gi|113596481|dbj|BAF20355.1| Os06g0694300 [Oryza sativa
Japonica Group] gi|125598347|gb|EAZ38127.1| hypothetical
protein OsJ_22476 [Oryza sativa Japonica Group]
Length = 648
Score = 78.6 bits (192), Expect(2) = 1e-16
Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 20/158 (12%)
Frame = -2
Query: 504 NHACMVDLHGMSRCLEGALQIYQNY----------AKICLCRIHVDPDIAATAANSLFKL 355
++ACMVDL G + ++ AL + ++ A + CRIH +IA A LFKL
Sbjct: 414 HYACMVDLLGRAGLVDEALDLVRSMSVTPHGGVWGALLGACRIHGKSEIAKVVAEHLFKL 473
Query: 354 KTNDIGNYILLSNISASSGR*KDVARV----ERQ*G*GLTKNPACSI------VIHEFLA 205
+ IGNY+LLSNI AS+G+ ++V++V +Q L K+PA S+ ++H+F A
Sbjct: 474 EPESIGNYVLLSNILASAGKWEEVSKVRILMRKQ---RLKKDPAVSLFEGRDGLVHQFFA 530
Query: 204 GNLIHPRSYQR*RSWKLSG*FKVP*THEQPVLSSVPYD 91
G+ HPR+++ + L K+ P+LSS+ YD
Sbjct: 531 GDNAHPRTHEI-KKALLELVAKLKLEGYVPILSSIVYD 567
Score = 32.3 bits (72), Expect(2) = 1e-16
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = -3
Query: 92 MND*EKMHILKAHIEKLVLAYELLTVASG 6
+ND EK +L H EKL L++ LLT+ SG
Sbjct: 568 VNDEEKERLLMGHSEKLALSFGLLTLGSG 596