BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00018783
         (1093 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containi...   542   e-152
ref|XP_003548443.1| PREDICTED: pentatricopeptide repeat-containi...   479   e-133
ref|XP_002320827.1| predicted protein [Populus trichocarpa] gi|2...   474   e-131
ref|XP_004139715.1| PREDICTED: pentatricopeptide repeat-containi...   462   e-128
ref|XP_002878387.1| pentatricopeptide repeat-containing protein ...   384   e-104

>ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
            mitochondrial [Vitis vinifera]
            gi|297745328|emb|CBI40408.3| unnamed protein product
            [Vitis vinifera]
          Length = 765

 Score =  542 bits (1396), Expect = e-152
 Identities = 253/363 (69%), Positives = 311/363 (85%)
 Frame = +2

Query: 2    LIAGLCKVGRQEEGLEMLEQMKSKHGCMPNTATFNSLIDGFCKAGELDRANELFDRMNEE 181
            LI GLCKVGRQEEGL ++E+M+S+  CMPNT T+N LIDG+CKA  ++ A ELFD+MN++
Sbjct: 386  LIDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKD 445

Query: 182  GILPNIITVNTLVDGFCKHGRVHTAIKFFRQMQAKGLKGNVNTYTSLLNAFYNSNNIEKS 361
            G+ PN++T+NTLVDG CKHGR++ A++FF +MQ KGLKGN  TYT+L+ AF N NNIEK+
Sbjct: 446  GVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKA 505

Query: 362  AELFDEMLDTGCSPDAKVYYTMISGLTNAGRLDDASFIVSKMKEAGFQLDTVAYNVLIGG 541
             ELFDEML+ GCSPDA VYYT+ISGL+ AG+LD ASF++SKMKEAGF  D V++NVLI G
Sbjct: 506  MELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLING 565

Query: 542  FCRRKRFDKAVELLADMEDNDVKPDNVTYNTLISYFSENGDFKTAHRVMKKMVHDGVVPT 721
            FCR+ + D+A E+L +ME+  +KPD VTYNTLIS+FS+ GDF TAHR+MKKMV +G+VPT
Sbjct: 566  FCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPT 625

Query: 722  VVTYGALIHAYCLAGNLDEAQKLFSNMCSTSSIPPNNVIYNILINSLCKKGKVDDALSLM 901
            VVTYGALIHAYCL GNLDEA K+F +M STS +PPN VIYNILINSLC+K +VD ALSLM
Sbjct: 626  VVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKVPPNTVIYNILINSLCRKNQVDLALSLM 685

Query: 902  NDMKVRGVRPNTNTFNAMFKGLYDKNWLDEALKLMDQMTQQACNPDYITMEILTDWLSTV 1081
            +DMKV+GV+PNTNTFNAMFKGL +KNWL +A +LMD+MT+ ACNPDYITMEILT+WLS V
Sbjct: 686  DDMKVKGVKPNTNTFNAMFKGLQEKNWLSKAFELMDRMTEHACNPDYITMEILTEWLSAV 745

Query: 1082 GET 1090
            GET
Sbjct: 746  GET 748



 Score =  141 bits (355), Expect = 3e-31
 Identities = 94/377 (24%), Positives = 178/377 (47%), Gaps = 13/377 (3%)
 Frame = +2

Query: 2    LIAGLCKVGRQEEGLEMLEQM-KSKHGCMPNTATFNSLIDGFCKAGELDRANE------L 160
            LI  L + GR ++ L +L++M + K    PN+ T + +     K  ++ RA +      L
Sbjct: 198  LIDVLFRKGRVDDALHLLDEMLQPKAEFPPNSNTGHIVFSALSKRDKVGRAVDEEEIVGL 257

Query: 161  FDRMNEEGILPNIITVNTLVDGFCKHGRVHTAIKFFRQMQAKGLKGNVNTYTSLLNAFYN 340
              +  E  + PN I +  L+   C+ GR                                
Sbjct: 258  VSKFAEHEVFPNSIWLTQLISRLCRSGRT------------------------------- 286

Query: 341  SNNIEKSAELFDEMLDTGCSPDAKVYYTMISGLTNAGRLDDASFIVSKMKEAGFQLDTVA 520
                +++ ++   ++  G   +A     +++ L  A      + ++++MKE   Q + V 
Sbjct: 287  ----DRAWDVLHGLMKLGGVMEAASCNALLTALGRAREFKRMNTLLAEMKEMDIQPNVVT 342

Query: 521  YNVLIGGFCRRKRFDKAVELLADMEDND-----VKPDNVTYNTLISYFSENGDFKTAHRV 685
            + +LI   C+ +R D+A+E+   M   +     V+PD +TYNTLI    + G  +    +
Sbjct: 343  FGILINHLCKFRRVDEALEVFEKMNGGESNGFLVEPDVITYNTLIDGLCKVGRQEEGLGL 402

Query: 686  MKKM-VHDGVVPTVVTYGALIHAYCLAGNLDEAQKLFSNMCSTSSIPPNNVIYNILINSL 862
            +++M      +P  VTY  LI  YC A  ++ A++LF  M +   +PPN V  N L++ +
Sbjct: 403  VERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQM-NKDGVPPNVVTLNTLVDGM 461

Query: 863  CKKGKVDDALSLMNDMKVRGVRPNTNTFNAMFKGLYDKNWLDEALKLMDQMTQQACNPDY 1042
            CK G+++ A+   N+M+ +G++ N  T+ A+ +   + N +++A++L D+M +  C+PD 
Sbjct: 462  CKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDA 521

Query: 1043 ITMEILTDWLSTVGETE 1093
            I    L   LS  G+ +
Sbjct: 522  IVYYTLISGLSQAGKLD 538


>ref|XP_003548443.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
            mitochondrial-like [Glycine max]
          Length = 746

 Score =  479 bits (1234), Expect = e-133
 Identities = 223/364 (61%), Positives = 287/364 (78%)
 Frame = +2

Query: 2    LIAGLCKVGRQEEGLEMLEQMKSKHGCMPNTATFNSLIDGFCKAGELDRANELFDRMNEE 181
            LI GLCKVG++E+GL +LE+MK  +   PNT T+N LIDGF KAG  DRA+ELF +MNEE
Sbjct: 363  LIDGLCKVGKEEDGLSLLEEMKMGNINRPNTVTYNCLIDGFFKAGNFDRAHELFRQMNEE 422

Query: 182  GILPNIITVNTLVDGFCKHGRVHTAIKFFRQMQAKGLKGNVNTYTSLLNAFYNSNNIEKS 361
            G+ PN+IT+NTLVDG CKHGRVH A++FF +M+ KGLKGN  TYT+L++AF   NNI ++
Sbjct: 423  GVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKGLKGNAATYTALISAFCGVNNINRA 482

Query: 362  AELFDEMLDTGCSPDAKVYYTMISGLTNAGRLDDASFIVSKMKEAGFQLDTVAYNVLIGG 541
             + F+EML +GCSPDA VYY++ISGL  AGR++DAS +VSK+K AGF LD   YNVLI G
Sbjct: 483  MQCFEEMLSSGCSPDAVVYYSLISGLCIAGRMNDASVVVSKLKLAGFSLDRSCYNVLISG 542

Query: 542  FCRRKRFDKAVELLADMEDNDVKPDNVTYNTLISYFSENGDFKTAHRVMKKMVHDGVVPT 721
            FC++K+ ++  ELL +ME+  VKPD +TYNTLISY  + GDF TA +VM+KM+ +G+ P+
Sbjct: 543  FCKKKKLERVYELLTEMEETGVKPDTITYNTLISYLGKTGDFATASKVMEKMIKEGLRPS 602

Query: 722  VVTYGALIHAYCLAGNLDEAQKLFSNMCSTSSIPPNNVIYNILINSLCKKGKVDDALSLM 901
            VVTYGA+IHAYC   N+DE  K+F  MCSTS +PPN VIYNILI++LC+   VD A+SLM
Sbjct: 603  VVTYGAIIHAYCSKKNVDEGMKIFGEMCSTSKVPPNTVIYNILIDALCRNNDVDRAISLM 662

Query: 902  NDMKVRGVRPNTNTFNAMFKGLYDKNWLDEALKLMDQMTQQACNPDYITMEILTDWLSTV 1081
             DMKV+ VRPNT T+NA+ KG+ DK  L +A +LMD+M ++AC PDYITME+LT+WLS V
Sbjct: 663  EDMKVKRVRPNTTTYNAILKGVRDKKMLHKAFELMDRMVEEACRPDYITMEVLTEWLSAV 722

Query: 1082 GETE 1093
            GE E
Sbjct: 723  GEIE 726



 Score =  156 bits (394), Expect = 1e-35
 Identities = 99/358 (27%), Positives = 176/358 (49%), Gaps = 9/358 (2%)
 Frame = +2

Query: 2    LIAGLCKVGRQEEGL--EMLEQMKSKHGCMPNTATFNSLIDGFCKAGELDRANELFDRMN 175
            L+  LC  G Q+ G+  E+L  +    G + + A+ N+L+    +  ++ R NEL   M 
Sbjct: 252  LVGKLC--GDQKNGVAWEVLHCVMRLGGAV-DAASCNALLTWLGRGRDIKRMNELLAEME 308

Query: 176  EEGILPNIITVNTLVDGFCKHGRVHTAIKFFRQMQAK------GLKGNVNTYTSLLNAFY 337
            +  I P+++T   LV+  CK  R+  A++ F +++ K      G++ +V  + +L++   
Sbjct: 309  KRKIRPSVVTFGILVNHLCKARRIDEALQVFDRLRGKGGSNWVGVEPDVVLFNTLIDGLC 368

Query: 338  NSNNIEKSAELFDEM-LDTGCSPDAKVYYTMISGLTNAGRLDDASFIVSKMKEAGFQLDT 514
                 E    L +EM +     P+   Y  +I G   AG  D A  +  +M E G Q + 
Sbjct: 369  KVGKEEDGLSLLEEMKMGNINRPNTVTYNCLIDGFFKAGNFDRAHELFRQMNEEGVQPNV 428

Query: 515  VAYNVLIGGFCRRKRFDKAVELLADMEDNDVKPDNVTYNTLISYFSENGDFKTAHRVMKK 694
            +  N L+ G C+  R  +AVE   +M+   +K +  TY  LIS F    +   A +  ++
Sbjct: 429  ITLNTLVDGLCKHGRVHRAVEFFNEMKGKGLKGNAATYTALISAFCGVNNINRAMQCFEE 488

Query: 695  MVHDGVVPTVVTYGALIHAYCLAGNLDEAQKLFSNMCSTSSIPPNNVIYNILINSLCKKG 874
            M+  G  P  V Y +LI   C+AG +++A  + S +   +    +   YN+LI+  CKK 
Sbjct: 489  MLSSGCSPDAVVYYSLISGLCIAGRMNDASVVVSKL-KLAGFSLDRSCYNVLISGFCKKK 547

Query: 875  KVDDALSLMNDMKVRGVRPNTNTFNAMFKGLYDKNWLDEALKLMDQMTQQACNPDYIT 1048
            K++    L+ +M+  GV+P+T T+N +   L        A K+M++M ++   P  +T
Sbjct: 548  KLERVYELLTEMEETGVKPDTITYNTLISYLGKTGDFATASKVMEKMIKEGLRPSVVT 605



 Score =  132 bits (332), Expect = 2e-28
 Identities = 87/313 (27%), Positives = 135/313 (43%), Gaps = 36/313 (11%)
 Frame = +2

Query: 2    LIAGLCKVGRQEEGLEMLEQMKSKHGCMPNTATFNSLIDGFCKAGELDRANELFDRMNEE 181
            L+ GLCK GR    +E   +MK K G   N AT+ +LI  FC    ++RA + F+ M   
Sbjct: 434  LVDGLCKHGRVHRAVEFFNEMKGK-GLKGNAATYTALISAFCGVNNINRAMQCFEEMLSS 492

Query: 182  GILPNIITVNTLVDGFCKHGRVHTAIKFFRQMQAKGLKGNVNTYTSLLNAFYNSNNIEKS 361
            G  P+ +   +L+ G C  GR++ A     +++  G   + + Y  L++ F     +E+ 
Sbjct: 493  GCSPDAVVYYSLISGLCIAGRMNDASVVVSKLKLAGFSLDRSCYNVLISGFCKKKKLERV 552

Query: 362  AELFDEMLDTGCSPDAKVYYTMISGLTNAGRLDDASFIVSKMKEAGFQL----------- 508
             EL  EM +TG  PD   Y T+IS L   G    AS ++ KM + G +            
Sbjct: 553  YELLTEMEETGVKPDTITYNTLISYLGKTGDFATASKVMEKMIKEGLRPSVVTYGAIIHA 612

Query: 509  -------------------------DTVAYNVLIGGFCRRKRFDKAVELLADMEDNDVKP 613
                                     +TV YN+LI   CR    D+A+ L+ DM+   V+P
Sbjct: 613  YCSKKNVDEGMKIFGEMCSTSKVPPNTVIYNILIDALCRNNDVDRAISLMEDMKVKRVRP 672

Query: 614  DNVTYNTLISYFSENGDFKTAHRVMKKMVHDGVVPTVVTYGALIHAYCLAGNLDEAQKLF 793
            +  TYN ++    +      A  +M +MV +   P  +T   L       G + E  K F
Sbjct: 673  NTTTYNAILKGVRDKKMLHKAFELMDRMVEEACRPDYITMEVLTEWLSAVGEI-EKLKHF 731

Query: 794  SNMCSTSSIPPNN 832
                  SS P ++
Sbjct: 732  VEGYQDSSYPASS 744



 Score = 79.7 bits (195), Expect = 1e-12
 Identities = 62/274 (22%), Positives = 106/274 (38%), Gaps = 41/274 (14%)
 Frame = +2

Query: 386  DTGCSPDAKVYYTMISGLTNAGRLDDASFIVSKMKEAGFQLDTVAYNVLIGGFCRRKRFD 565
            + G  PD      ++  L    +   A  ++  +   G  +D  + N L+    R +   
Sbjct: 239  ERGVFPDGFKLTQLVGKLCGDQKNGVAWEVLHCVMRLGGAVDAASCNALLTWLGRGRDIK 298

Query: 566  KAVELLADMEDNDVKPDNVTYNTLISYFSENGDFKTAHRVMKKMVHDG------VVPTVV 727
            +  ELLA+ME   ++P  VT+  L+++  +      A +V  ++   G      V P VV
Sbjct: 299  RMNELLAEMEKRKIRPSVVTFGILVNHLCKARRIDEALQVFDRLRGKGGSNWVGVEPDVV 358

Query: 728  TYGALIHAYCLAGNLDEAQKLFSNMCSTSSIPPNNVIYNILI------------------ 853
             +  LI   C  G  ++   L   M   +   PN V YN LI                  
Sbjct: 359  LFNTLIDGLCKVGKEEDGLSLLEEMKMGNINRPNTVTYNCLIDGFFKAGNFDRAHELFRQ 418

Query: 854  -----------------NSLCKKGKVDDALSLMNDMKVRGVRPNTNTFNAMFKGLYDKNW 982
                             + LCK G+V  A+   N+MK +G++ N  T+ A+       N 
Sbjct: 419  MNEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKGLKGNAATYTALISAFCGVNN 478

Query: 983  LDEALKLMDQMTQQACNPDYITMEILTDWLSTVG 1084
            ++ A++  ++M    C+PD +    L   L   G
Sbjct: 479  INRAMQCFEEMLSSGCSPDAVVYYSLISGLCIAG 512


>ref|XP_002320827.1| predicted protein [Populus trichocarpa] gi|222861600|gb|EEE99142.1|
            predicted protein [Populus trichocarpa]
          Length = 775

 Score =  474 bits (1221), Expect = e-131
 Identities = 220/364 (60%), Positives = 288/364 (79%)
 Frame = +2

Query: 2    LIAGLCKVGRQEEGLEMLEQMKSKHGCMPNTATFNSLIDGFCKAGELDRANELFDRMNEE 181
            LI GLCKVGRQ+EGL ++E+M+S+ GC P+T T+N LIDGFCKAGE+++  ELFD MN+E
Sbjct: 389  LIDGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKELFDEMNKE 448

Query: 182  GILPNIITVNTLVDGFCKHGRVHTAIKFFRQMQAKGLKGNVNTYTSLLNAFYNSNNIEKS 361
            G+ PN++TVNTLV G C+ GRV +A+ FF + Q +G+KG+  TYT+L+NAF N NN EK+
Sbjct: 449  GVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAFCNVNNFEKA 508

Query: 362  AELFDEMLDTGCSPDAKVYYTMISGLTNAGRLDDASFIVSKMKEAGFQLDTVAYNVLIGG 541
             ELF+EML +GCSPDA VYYT+ISG + AGR+ DASF+++++K+ G + DTV YN LIGG
Sbjct: 509  MELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIRPDTVCYNTLIGG 568

Query: 542  FCRRKRFDKAVELLADMEDNDVKPDNVTYNTLISYFSENGDFKTAHRVMKKMVHDGVVPT 721
            FCR  +F +  E+L +ME+  +KPD +TYNTLI+Y S+NGD K A +VM+KM+  GVVPT
Sbjct: 569  FCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQKVMRKMIKAGVVPT 628

Query: 722  VVTYGALIHAYCLAGNLDEAQKLFSNMCSTSSIPPNNVIYNILINSLCKKGKVDDALSLM 901
            V TYGA+I+AYCL GN +EA ++F +M + S +PPN VIYNILINSLCK  KV  A+SLM
Sbjct: 629  VATYGAVINAYCLNGNGNEAMEIFKDMKAASKVPPNTVIYNILINSLCKNNKVKSAVSLM 688

Query: 902  NDMKVRGVRPNTNTFNAMFKGLYDKNWLDEALKLMDQMTQQACNPDYITMEILTDWLSTV 1081
             DMK+ GV PNT T+NA+FKGL D+  L++  + MD+M + ACNPDYITMEILT+WLS V
Sbjct: 689  EDMKIWGVTPNTTTYNAIFKGLRDEKDLEKVFEFMDRMIEHACNPDYITMEILTEWLSAV 748

Query: 1082 GETE 1093
            GE E
Sbjct: 749  GEIE 752



 Score =  129 bits (324), Expect = 1e-27
 Identities = 74/273 (27%), Positives = 129/273 (47%), Gaps = 1/273 (0%)
 Frame = +2

Query: 2    LIAGLCKVGRQEEGLEMLEQMKSKHGCMPNTATFNSLIDGFCKAGELDRANELFDRMNEE 181
            LI   C V   E+ +E+  +M  K GC P+   + +LI GF +AG +  A+ +   + + 
Sbjct: 495  LINAFCNVNNFEKAMELFNEML-KSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKL 553

Query: 182  GILPNIITVNTLVDGFCKHGRVHTAIKFFRQMQAKGLKGNVNTYTSLLNAFYNSNNIEKS 361
            GI P+ +  NTL+ GFC+  + H   +  ++M+  GLK +  TY +L+     + +++ +
Sbjct: 554  GIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFA 613

Query: 362  AELFDEMLDTGCSPDAKVYYTMISGLTNAGRLDDASFIVSKMKEAG-FQLDTVAYNVLIG 538
             ++  +M+  G  P    Y  +I+     G  ++A  I   MK A     +TV YN+LI 
Sbjct: 614  QKVMRKMIKAGVVPTVATYGAVINAYCLNGNGNEAMEIFKDMKAASKVPPNTVIYNILIN 673

Query: 539  GFCRRKRFDKAVELLADMEDNDVKPDNVTYNTLISYFSENGDFKTAHRVMKKMVHDGVVP 718
              C+  +   AV L+ DM+   V P+  TYN +     +  D +     M +M+     P
Sbjct: 674  SLCKNNKVKSAVSLMEDMKIWGVTPNTTTYNAIFKGLRDEKDLEKVFEFMDRMIEHACNP 733

Query: 719  TVVTYGALIHAYCLAGNLDEAQKLFSNMCSTSS 817
              +T   L       G ++  +K  +  C  SS
Sbjct: 734  DYITMEILTEWLSAVGEIERLKKFVAG-CEVSS 765



 Score =  108 bits (270), Expect = 2e-21
 Identities = 87/375 (23%), Positives = 164/375 (43%), Gaps = 26/375 (6%)
 Frame = +2

Query: 38   EGLEMLEQMKSKHGCMPNTA-----TFNSLID-GFCKAGELDRANELFDRMNEEGILPNI 199
            + L+ L  +++     P+T      TF ++ +  FC+       + L+    E  I   +
Sbjct: 98   QALKFLNYLQNNSPSSPDTQSLLSYTFQAIFELAFCEPDSNANLSRLYKTSKELNIPLTV 157

Query: 200  ITVNTLVDGFCKHGRVHTAIKFFRQMQAKGLKGNVNTYTS--LLNAFYNSNNIEKSAELF 373
               + L+    +   V  ++  F  +         NTY     L+    S  ++ + ++ 
Sbjct: 158  NAASFLLRASGRSELVEESLILFNDLDPSVK----NTYLRNVWLSILLRSGRVKDALKVI 213

Query: 374  DEML----DTGCSPDAKVYYTMISGLTNAGRL------DDASFIVSKMKEAGFQLDTVAY 523
            DEM     D+ C P+      + S L    R       D+   +V K  E G  + +   
Sbjct: 214  DEMFESNDDSNCRPNDATGDILFSFLLKRERNEELLSEDEIVNLVLKFGEHGVLISSFWM 273

Query: 524  NVLIGGFCRRKRFDKAVELLADMEDNDVKPDNVTYNTLISYFSENGDFKTAHRVMKKMVH 703
              LI   CR ++ ++  +L  +M       ++   N+L++  +  G+F   + +M+KMV 
Sbjct: 274  GRLITRLCRNRKTNRGWDLFTEMIKLGAVLESAACNSLLTGLAREGNFNRMNELMEKMVE 333

Query: 704  DGVVPTVVTYGALIHAYCLAGNLDEAQKLFSNMCS-------TSSIPPNNVIYNILINSL 862
              + P VVT+G LI+  C    +D+A ++   M         + S+ P+ VIYN LI+ L
Sbjct: 334  MDIQPNVVTFGILINHMCKFRRVDDALEVLEKMSGGKESGGISVSVEPDVVIYNTLIDGL 393

Query: 863  CKKGKVDDALSLMNDMK-VRGVRPNTNTFNAMFKGLYDKNWLDEALKLMDQMTQQACNPD 1039
            CK G+  + L LM  M+  +G  P+T T+N +  G      +++  +L D+M ++   P+
Sbjct: 394  CKVGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKELFDEMNKEGVAPN 453

Query: 1040 YITMEILTDWLSTVG 1084
             +T+  L   +   G
Sbjct: 454  VVTVNTLVGGMCRTG 468



 Score = 97.8 bits (242), Expect = 4e-18
 Identities = 84/363 (23%), Positives = 144/363 (39%), Gaps = 3/363 (0%)
 Frame = +2

Query: 14   LCKVGRQEEGLEMLEQMKSKH---GCMPNTATFNSLIDGFCKAGELDRANELFDRMNEEG 184
            L + GR ++ L+++++M   +    C PN AT + L     K    +R  EL   ++E+ 
Sbjct: 200  LLRSGRVKDALKVIDEMFESNDDSNCRPNDATGDILFSFLLKR---ERNEEL---LSEDE 253

Query: 185  ILPNIITVNTLVDGFCKHGRVHTAIKFFRQMQAKGLKGNVNTYTSLLNAFYNSNNIEKSA 364
            I+        LV  F +HG + ++    R                L+     +    +  
Sbjct: 254  IV-------NLVLKFGEHGVLISSFWMGR----------------LITRLCRNRKTNRGW 290

Query: 365  ELFDEMLDTGCSPDAKVYYTMISGLTNAGRLDDASFIVSKMKEAGFQLDTVAYNVLIGGF 544
            +LF EM+  G   ++    ++++GL   G  +  + ++ KM E   Q + V + +LI   
Sbjct: 291  DLFTEMIKLGAVLESAACNSLLTGLAREGNFNRMNELMEKMVEMDIQPNVVTFGILINHM 350

Query: 545  CRRKRFDKAVELLADMEDNDVKPDNVTYNTLISYFSENGDFKTAHRVMKKMVHDGVVPTV 724
            C+ +R D A+E+L  M                    E+G    +           V P V
Sbjct: 351  CKFRRVDDALEVLEKMSGG----------------KESGGISVS-----------VEPDV 383

Query: 725  VTYGALIHAYCLAGNLDEAQKLFSNMCSTSSIPPNNVIYNILINSLCKKGKVDDALSLMN 904
            V Y  LI   C  G   E   L   M S     P+ + YN LI+  CK G+++    L +
Sbjct: 384  VIYNTLIDGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKELFD 443

Query: 905  DMKVRGVRPNTNTFNAMFKGLYDKNWLDEALKLMDQMTQQACNPDYITMEILTDWLSTVG 1084
            +M   GV PN  T N +  G+     +  A+    +  ++    D +T   L +    V 
Sbjct: 444  EMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAFCNVN 503

Query: 1085 ETE 1093
              E
Sbjct: 504  NFE 506


>ref|XP_004139715.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
            mitochondrial-like [Cucumis sativus]
            gi|449475521|ref|XP_004154479.1| PREDICTED:
            pentatricopeptide repeat-containing protein At3g61520,
            mitochondrial-like [Cucumis sativus]
          Length = 660

 Score =  462 bits (1188), Expect = e-128
 Identities = 230/364 (63%), Positives = 283/364 (77%), Gaps = 2/364 (0%)
 Frame = +2

Query: 2    LIAGLCKVGRQEEGLEMLEQMKSKHGCMPNTATFNSLIDGFCKAGELDRANELFDRMNEE 181
            LI GLCKVGRQEE L ++ +M+S   C P TATFN LI+G+C++GE++ A++LF+ M   
Sbjct: 234  LIDGLCKVGRQEEALCLMGKMRSDQ-CAPTTATFNCLINGYCRSGEIEVAHKLFNEMENA 292

Query: 182  GILPNIITVNTLVDGFCKHGRVHTAIKFFRQMQAKGLKGNVNTYTSLLNAFYNSNNIEKS 361
             I PN+IT+NTLVDG CKH R+ TA++FFR MQ KGLKGN  TYT  +NAF N NN+ K+
Sbjct: 293  QIEPNVITLNTLVDGMCKHNRISTAVEFFRVMQQKGLKGNNVTYTVFINAFCNVNNMNKA 352

Query: 362  AELFDEMLDTGCSPDAKVYYTMISGLTNAGRLDDASFIVSKMKEAGFQLDTVAYNVLIGG 541
             E  DEM   GC PDA VYYT+I GL  AGRLDDAS +VSK+KEAGF LD V YNVLI  
Sbjct: 353  MEFLDEMSKDGCFPDAVVYYTLICGLAQAGRLDDASSVVSKLKEAGFCLDRVCYNVLISE 412

Query: 542  FCRRKRFDKAVELLADMEDNDVKPDNVTYNTLISYFSENGDFKTAHRVMKKMV-HDGVVP 718
            FC++ + D+A E L +ME   VKPD+VTYNTLISYFS+ G+FK AH+ MKKM   +G+ P
Sbjct: 413  FCKKNKLDRAQEWLNEMELAGVKPDSVTYNTLISYFSKIGNFKLAHKFMKKMTEEEGLSP 472

Query: 719  TVVTYGALIHAYCLAGNLDEAQKLFSNMCSTSS-IPPNNVIYNILINSLCKKGKVDDALS 895
            TV TYGALIHAYCL  N+DEA K+F  M + +S +PPN VIYNILI+SLCK+ +V+ ALS
Sbjct: 473  TVFTYGALIHAYCLNNNIDEAIKIFKEMNNVASKVPPNTVIYNILIDSLCKQTQVNFALS 532

Query: 896  LMNDMKVRGVRPNTNTFNAMFKGLYDKNWLDEALKLMDQMTQQACNPDYITMEILTDWLS 1075
            L++DMK RGV PNT T+N++FK L DKNWLD+A KLMD+M +QACNPDYITMEILT+WLS
Sbjct: 533  LLDDMKFRGVMPNTTTYNSIFKALRDKNWLDKAFKLMDRMVEQACNPDYITMEILTEWLS 592

Query: 1076 TVGE 1087
             VGE
Sbjct: 593  AVGE 596



 Score =  140 bits (353), Expect = 6e-31
 Identities = 95/378 (25%), Positives = 167/378 (44%), Gaps = 14/378 (3%)
 Frame = +2

Query: 2    LIAGLCKVGRQEEGLEMLEQMKSKHGCMPNTATFNSLIDGFCKAGELDRANELFDRM--N 175
            L+  L ++G  +E L     + S      NT   N +I+   K+G +D A  + D M   
Sbjct: 12   LLRRLGRIGMVDEALAAFSTLDSH---AKNTNVRNEIINLLLKSGRVDNAMNVLDEMLLP 68

Query: 176  EEGILPNIITVNTLVDGFCKHGRVHTAIKFFRQMQAKGLKGNVNTY------TSLLNAFY 337
            E    PN  T   + +   K   +   +K           G  N +      T L++   
Sbjct: 69   ESEFRPNDKTAGIVFNNLLKIDGLEGRVKEDEIAGLVSKFGKHNIFPDTIALTQLISKLC 128

Query: 338  NSNNIEKSAELFDEMLDTGCSPDAKVYYTMISGLTNAGRLDDASFIVSKMKEAGFQLDTV 517
             S N   +  + D ++      DA     +++GL  A      + ++ KMK+   Q   +
Sbjct: 129  RSGNTNLAWNILDNLMMLNGLKDAAPCNALLTGLGKAREFGKMNLLMRKMKDMNIQPTVI 188

Query: 518  AYNVLIGGFCRRKRFDKAVELLADMEDND------VKPDNVTYNTLISYFSENGDFKTAH 679
             + +LI   C+ +R D A+E+   M+         V PD + YNTLI    + G  + A 
Sbjct: 189  TFGILINHLCKFRRIDDALEVFEKMKGEKEETKVFVAPDTIMYNTLIDGLCKVGRQEEAL 248

Query: 680  RVMKKMVHDGVVPTVVTYGALIHAYCLAGNLDEAQKLFSNMCSTSSIPPNNVIYNILINS 859
             +M KM  D   PT  T+  LI+ YC +G ++ A KLF+ M   + I PN +  N L++ 
Sbjct: 249  CLMGKMRSDQCAPTTATFNCLINGYCRSGEIEVAHKLFNEM-ENAQIEPNVITLNTLVDG 307

Query: 860  LCKKGKVDDALSLMNDMKVRGVRPNTNTFNAMFKGLYDKNWLDEALKLMDQMTQQACNPD 1039
            +CK  ++  A+     M+ +G++ N  T+        + N +++A++ +D+M++  C PD
Sbjct: 308  MCKHNRISTAVEFFRVMQQKGLKGNNVTYTVFINAFCNVNNMNKAMEFLDEMSKDGCFPD 367

Query: 1040 YITMEILTDWLSTVGETE 1093
             +    L   L+  G  +
Sbjct: 368  AVVYYTLICGLAQAGRLD 385



 Score =  122 bits (307), Expect = 1e-25
 Identities = 73/270 (27%), Positives = 130/270 (48%), Gaps = 3/270 (1%)
 Frame = +2

Query: 5    IAGLCKVGRQEEGLEMLEQMKSKHGCMPNTATFNSLIDGFCKAGELDRANELFDRMNEEG 184
            I   C V    + +E L++M SK GC P+   + +LI G  +AG LD A+ +  ++ E G
Sbjct: 340  INAFCNVNNMNKAMEFLDEM-SKDGCFPDAVVYYTLICGLAQAGRLDDASSVVSKLKEAG 398

Query: 185  ILPNIITVNTLVDGFCKHGRVHTAIKFFRQMQAKGLKGNVNTYTSLLNAFYNSNNIEKSA 364
               + +  N L+  FCK  ++  A ++  +M+  G+K +  TY +L++ F    N + + 
Sbjct: 399  FCLDRVCYNVLISEFCKKNKLDRAQEWLNEMELAGVKPDSVTYNTLISYFSKIGNFKLAH 458

Query: 365  ELFDEMLDT-GCSPDAKVYYTMISGLTNAGRLDDASFIVSKMKEAGFQL--DTVAYNVLI 535
            +   +M +  G SP    Y  +I        +D+A  I  +M     ++  +TV YN+LI
Sbjct: 459  KFMKKMTEEEGLSPTVFTYGALIHAYCLNNNIDEAIKIFKEMNNVASKVPPNTVIYNILI 518

Query: 536  GGFCRRKRFDKAVELLADMEDNDVKPDNVTYNTLISYFSENGDFKTAHRVMKKMVHDGVV 715
               C++ + + A+ LL DM+   V P+  TYN++     +      A ++M +MV     
Sbjct: 519  DSLCKQTQVNFALSLLDDMKFRGVMPNTTTYNSIFKALRDKNWLDKAFKLMDRMVEQACN 578

Query: 716  PTVVTYGALIHAYCLAGNLDEAQKLFSNMC 805
            P  +T   L       G + + +K F+  C
Sbjct: 579  PDYITMEILTEWLSAVGEITKLKK-FTQGC 607


>ref|XP_002878387.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata] gi|297324225|gb|EFH54646.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 766

 Score =  384 bits (985), Expect = e-104
 Identities = 186/358 (51%), Positives = 255/358 (71%)
 Frame = +2

Query: 2    LIAGLCKVGRQEEGLEMLEQMKSKHGCMPNTATFNSLIDGFCKAGELDRANELFDRMNEE 181
            LI GLCKVGR +E  E+L +MK +  C+PNT T+N LIDG+C+AG+L+ A E+  RM E+
Sbjct: 376  LIDGLCKVGRLKEAEELLVRMKMEERCVPNTVTYNCLIDGYCRAGKLETAKEVVSRMKED 435

Query: 182  GILPNIITVNTLVDGFCKHGRVHTAIKFFRQMQAKGLKGNVNTYTSLLNAFYNSNNIEKS 361
            GI P+++TVNT+V G C+H  ++ A+ FF  M+ +G+KGNV TY +L++A  + +NIEK+
Sbjct: 436  GIKPDVVTVNTIVGGMCRHHGLNMAVLFFMDMEKEGVKGNVVTYMTLIHACCSLSNIEKA 495

Query: 362  AELFDEMLDTGCSPDAKVYYTMISGLTNAGRLDDASFIVSKMKEAGFQLDTVAYNVLIGG 541
               FD+ML+ GCSPDAK+YY +ISGL    R  DA  +V K++E GF LD +AYN+LIG 
Sbjct: 496  MHWFDKMLEAGCSPDAKIYYALISGLCQVRRDHDAIRVVEKLREGGFSLDLLAYNMLIGL 555

Query: 542  FCRRKRFDKAVELLADMEDNDVKPDNVTYNTLISYFSENGDFKTAHRVMKKMVHDGVVPT 721
            FC +   +K  E+L DME   +KPD++TYNTLIS+F ++ DF++  R+M++M  D + PT
Sbjct: 556  FCDKNNAEKVYEMLTDMEKEGMKPDSITYNTLISFFGKHKDFESVERMMEQMREDELDPT 615

Query: 722  VVTYGALIHAYCLAGNLDEAQKLFSNMCSTSSIPPNNVIYNILINSLCKKGKVDDALSLM 901
            V TYGA+I AYC  G L EA KLF +M   S + PN VIYNILIN+  K G    ALSL 
Sbjct: 616  VATYGAVIEAYCSVGELGEALKLFKDMGLRSKVNPNTVIYNILINAFSKLGNFGQALSLK 675

Query: 902  NDMKVRGVRPNTNTFNAMFKGLYDKNWLDEALKLMDQMTQQACNPDYITMEILTDWLS 1075
             +MK++ VRPN  T+NA+FK L +KN  +  LKLMD+M +Q+C P+ ITMEIL + LS
Sbjct: 676  EEMKMKMVRPNVETYNALFKCLKEKNQAETLLKLMDEMVEQSCEPNQITMEILMERLS 733



 Score =  151 bits (382), Expect = 2e-34
 Identities = 99/368 (26%), Positives = 170/368 (46%), Gaps = 7/368 (1%)
 Frame = +2

Query: 5    IAGLCKVGRQEEGLEMLEQMKSKHGCMPNTATFNSLIDGFCKAGELDRANELFDRMNEEG 184
            I+ LCK  R     ++L  +  K+        FN+L+    +   + R N L  +M+E  
Sbjct: 266  ISSLCKNARTNAAWDILSDLM-KNKAPLEAPPFNALLSCLGRNMNIGRMNALVLKMDEMK 324

Query: 185  ILPNIITVNTLVDGFCKHGRVHTAIKFFRQMQAKG------LKGNVNTYTSLLNAFYNSN 346
            I P+++T+  L++  CK  RV  A++ F QM  K       +K +   + +L++      
Sbjct: 325  IRPDVVTLGILINTLCKSRRVDEALQVFEQMCGKRTDDGNVIKADSIHFNTLIDGLCKVG 384

Query: 347  NIEKSAELFDEM-LDTGCSPDAKVYYTMISGLTNAGRLDDASFIVSKMKEAGFQLDTVAY 523
             ++++ EL   M ++  C P+   Y  +I G   AG+L+ A  +VS+MKE G + D V  
Sbjct: 385  RLKEAEELLVRMKMEERCVPNTVTYNCLIDGYCRAGKLETAKEVVSRMKEDGIKPDVVTV 444

Query: 524  NVLIGGFCRRKRFDKAVELLADMEDNDVKPDNVTYNTLISYFSENGDFKTAHRVMKKMVH 703
            N ++GG CR    + AV    DME   VK + VTY TLI       + + A     KM+ 
Sbjct: 445  NTIVGGMCRHHGLNMAVLFFMDMEKEGVKGNVVTYMTLIHACCSLSNIEKAMHWFDKMLE 504

Query: 704  DGVVPTVVTYGALIHAYCLAGNLDEAQKLFSNMCSTSSIPPNNVIYNILINSLCKKGKVD 883
             G  P    Y ALI   C      +A ++   +        + + YN+LI   C K   +
Sbjct: 505  AGCSPDAKIYYALISGLCQVRRDHDAIRVVEKL-REGGFSLDLLAYNMLIGLFCDKNNAE 563

Query: 884  DALSLMNDMKVRGVRPNTNTFNAMFKGLYDKNWLDEALKLMDQMTQQACNPDYITMEILT 1063
                ++ DM+  G++P++ T+N +          +   ++M+QM +   +P   T   + 
Sbjct: 564  KVYEMLTDMEKEGMKPDSITYNTLISFFGKHKDFESVERMMEQMREDELDPTVATYGAVI 623

Query: 1064 DWLSTVGE 1087
            +   +VGE
Sbjct: 624  EAYCSVGE 631



 Score = 94.0 bits (232), Expect = 6e-17
 Identities = 85/345 (24%), Positives = 152/345 (44%), Gaps = 10/345 (2%)
 Frame = +2

Query: 44   LEMLEQMKSKHGCMPNTATFNSLIDGFCKAGELDRANELFDRMNEEGILPNIITVNTLVD 223
            L + E  K K+  +   AT   LI  F + G  +++  +++R++    + N    N ++D
Sbjct: 137  LRLYEIAKEKNIPLTVVAT-KLLIRWFGRMGMANQSVLVYERLDSN--MKNSQVRNVVID 193

Query: 224  GFCKHGRVHTAIKFFRQMQAKGLKGNVNTYTS--LLNAFYNSNNI--EKSAELFDEMLDT 391
               ++G V  A K   +M  K      N  T+  +L+  +    +  EK   L       
Sbjct: 194  VLLRNGLVDDAFKVLDEMLQKESVFPPNRITADIVLHEVWKGRLLTEEKIIGLISRFSSH 253

Query: 392  GCSPDAKVYYTMISGLTNAGRLDDASFIVSKMKEAGFQLDTVAYNVLIGGFCRRKRFDKA 571
            G SP++      IS L    R + A  I+S + +    L+   +N L+    R     + 
Sbjct: 254  GVSPNSVWLTRFISSLCKNARTNAAWDILSDLMKNKAPLEAPPFNALLSCLGRNMNIGRM 313

Query: 572  VELLADMEDNDVKPDNVTYNTLISYFSENGDFKTAHRVMKKM----VHDGVVPTV--VTY 733
              L+  M++  ++PD VT   LI+   ++     A +V ++M      DG V     + +
Sbjct: 314  NALVLKMDEMKIRPDVVTLGILINTLCKSRRVDEALQVFEQMCGKRTDDGNVIKADSIHF 373

Query: 734  GALIHAYCLAGNLDEAQKLFSNMCSTSSIPPNNVIYNILINSLCKKGKVDDALSLMNDMK 913
              LI   C  G L EA++L   M       PN V YN LI+  C+ GK++ A  +++ MK
Sbjct: 374  NTLIDGLCKVGRLKEAEELLVRMKMEERCVPNTVTYNCLIDGYCRAGKLETAKEVVSRMK 433

Query: 914  VRGVRPNTNTFNAMFKGLYDKNWLDEALKLMDQMTQQACNPDYIT 1048
              G++P+  T N +  G+   + L+ A+     M ++    + +T
Sbjct: 434  EDGIKPDVVTVNTIVGGMCRHHGLNMAVLFFMDMEKEGVKGNVVT 478



 Score = 74.3 bits (181), Expect = 5e-11
 Identities = 41/137 (29%), Positives = 67/137 (48%), Gaps = 1/137 (0%)
 Frame = +2

Query: 50   MLEQMKSKHGCMPNTATFNSLIDGFCKAGELDRANELFDRMN-EEGILPNIITVNTLVDG 226
            M+EQM+      P  AT+ ++I+ +C  GEL  A +LF  M     + PN +  N L++ 
Sbjct: 603  MMEQMREDE-LDPTVATYGAVIEAYCSVGELGEALKLFKDMGLRSKVNPNTVIYNILINA 661

Query: 227  FCKHGRVHTAIKFFRQMQAKGLKGNVNTYTSLLNAFYNSNNIEKSAELFDEMLDTGCSPD 406
            F K G    A+    +M+ K ++ NV TY +L       N  E   +L DEM++  C P+
Sbjct: 662  FSKLGNFGQALSLKEEMKMKMVRPNVETYNALFKCLKEKNQAETLLKLMDEMVEQSCEPN 721

Query: 407  AKVYYTMISGLTNAGRL 457
                  ++  L+ +  L
Sbjct: 722  QITMEILMERLSGSDEL 738