BLASTX nr result

ID: Cnidium21_contig00018392 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00018392
         (851 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI30669.3| unnamed protein product [Vitis vinifera]               90   7e-16
ref|XP_002274637.1| PREDICTED: 50S ribosomal protein L34, chloro...    90   7e-16
emb|CAN60201.1| hypothetical protein VITISV_036402 [Vitis vinifera]    90   7e-16
ref|XP_002890790.1| ribosomal protein L34 family protein [Arabid...    89   2e-15
ref|XP_004134668.1| PREDICTED: 50S ribosomal protein L34, chloro...    87   4e-15

>emb|CBI30669.3| unnamed protein product [Vitis vinifera]
          Length = 113

 Score = 89.7 bits (221), Expect = 7e-16
 Identities = 45/72 (62%), Positives = 52/72 (72%)
 Frame = +2

Query: 461 GIKTEKSRGLVVRAGKAALCQTKRSRSRKSLARTHGFRKRMSTTSXXXXXXXXXXXXXXX 640
           G++ E+  GLVVRAGKAALCQTKR+RSRKSLARTHGFR+RM TTS               
Sbjct: 41  GVRKERGHGLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKV 100

Query: 641 LCTKTNHSSGKQ 676
           LCTK+N SSGK+
Sbjct: 101 LCTKSNPSSGKR 112


>ref|XP_002274637.1| PREDICTED: 50S ribosomal protein L34, chloroplastic-like [Vitis
           vinifera]
          Length = 148

 Score = 89.7 bits (221), Expect = 7e-16
 Identities = 45/72 (62%), Positives = 52/72 (72%)
 Frame = +2

Query: 461 GIKTEKSRGLVVRAGKAALCQTKRSRSRKSLARTHGFRKRMSTTSXXXXXXXXXXXXXXX 640
           G++ E+  GLVVRAGKAALCQTKR+RSRKSLARTHGFR+RM TTS               
Sbjct: 76  GVRKERGHGLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKV 135

Query: 641 LCTKTNHSSGKQ 676
           LCTK+N SSGK+
Sbjct: 136 LCTKSNPSSGKR 147


>emb|CAN60201.1| hypothetical protein VITISV_036402 [Vitis vinifera]
          Length = 148

 Score = 89.7 bits (221), Expect = 7e-16
 Identities = 45/72 (62%), Positives = 52/72 (72%)
 Frame = +2

Query: 461 GIKTEKSRGLVVRAGKAALCQTKRSRSRKSLARTHGFRKRMSTTSXXXXXXXXXXXXXXX 640
           G++ E+  GLVVRAGKAALCQTKR+RSRKSLARTHGFR+RM TTS               
Sbjct: 76  GVRKERGHGLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKV 135

Query: 641 LCTKTNHSSGKQ 676
           LCTK+N SSGK+
Sbjct: 136 LCTKSNPSSGKR 147


>ref|XP_002890790.1| ribosomal protein L34 family protein [Arabidopsis lyrata subsp.
           lyrata] gi|297336632|gb|EFH67049.1| ribosomal protein
           L34 family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 159

 Score = 88.6 bits (218), Expect = 2e-15
 Identities = 45/72 (62%), Positives = 52/72 (72%)
 Frame = +2

Query: 461 GIKTEKSRGLVVRAGKAALCQTKRSRSRKSLARTHGFRKRMSTTSXXXXXXXXXXXXXXX 640
           G+ +++ RGLVVRAGKAALCQTKRSRSRKSLARTHGFR+RM TTS               
Sbjct: 87  GLNSQRHRGLVVRAGKAALCQTKRSRSRKSLARTHGFRRRMRTTSGRATIKRRRAKGRWN 146

Query: 641 LCTKTNHSSGKQ 676
           LC K+N SSGK+
Sbjct: 147 LCPKSNPSSGKR 158


>ref|XP_004134668.1| PREDICTED: 50S ribosomal protein L34, chloroplastic-like [Cucumis
           sativus] gi|449479241|ref|XP_004155546.1| PREDICTED: 50S
           ribosomal protein L34, chloroplastic-like [Cucumis
           sativus]
          Length = 155

 Score = 87.4 bits (215), Expect = 4e-15
 Identities = 45/72 (62%), Positives = 51/72 (70%)
 Frame = +2

Query: 461 GIKTEKSRGLVVRAGKAALCQTKRSRSRKSLARTHGFRKRMSTTSXXXXXXXXXXXXXXX 640
           G+   K RGLVVRAGKAALCQTKR+RSRKSLARTHGFR+RM TT+               
Sbjct: 83  GVGQGKGRGLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKV 142

Query: 641 LCTKTNHSSGKQ 676
           LCTK+N SSGK+
Sbjct: 143 LCTKSNPSSGKR 154


Top