BLASTX nr result
ID: Cnidium21_contig00018363
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cnidium21_contig00018363
(1014 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002272014.2| PREDICTED: transcription elongation regulato... 124 6e-51
ref|XP_002515795.1| Pre-mRNA-processing protein PRP40, putative ... 128 6e-51
ref|XP_002315062.1| predicted protein [Populus trichocarpa] gi|2... 127 5e-50
ref|XP_003540642.1| PREDICTED: transcription elongation regulato... 120 8e-48
ref|XP_003607201.1| Transcription elongation regulator [Medicago... 120 1e-45
>ref|XP_002272014.2| PREDICTED: transcription elongation regulator 1-like [Vitis vinifera]
gi|297738259|emb|CBI27460.3| unnamed protein product
[Vitis vinifera]
Length = 1046
Score = 124 bits (312), Expect(2) = 6e-51
Identities = 63/81 (77%), Positives = 68/81 (83%)
Frame = -2
Query: 962 KARRKEAVESYQALLVETIKDAQASWTESKAKLEKDPQGRATKYHLDQSDLEKLFREHVK 783
K RRKEAV SYQALLVETIKD Q SWTESK KLEKDPQ RAT LD SDLEKLFREH+K
Sbjct: 878 KVRRKEAVSSYQALLVETIKDPQVSWTESKPKLEKDPQARATNSDLDPSDLEKLFREHIK 937
Query: 782 MLNERCTRDFRALLAEVITAE 720
ML+ER +FRALL+EV+TAE
Sbjct: 938 MLHERRAHEFRALLSEVLTAE 958
Score = 103 bits (257), Expect(2) = 6e-51
Identities = 49/88 (55%), Positives = 68/88 (77%)
Frame = -1
Query: 672 ALKERDDGKTVFTSWSTAKHLLKADVRYAKMPRKERESLWRRHVDDIQRRLKLSLNEQTE 493
A +E +DGKTV TSWSTAK LL++D RY KMPRK+RES+WRR+ +++ R+ KL+ ++ E
Sbjct: 960 ATQETEDGKTVLTSWSTAKRLLRSDTRYIKMPRKDRESVWRRYSEEMLRKQKLAQDQTEE 1019
Query: 492 KHSLESKNHPAVEAGKHQSGSRRNHERR 409
KH+ E K +V++G+ SGSRR HERR
Sbjct: 1020 KHT-EVKGRSSVDSGRFPSGSRRAHERR 1046
>ref|XP_002515795.1| Pre-mRNA-processing protein PRP40, putative [Ricinus communis]
gi|223545064|gb|EEF46576.1| Pre-mRNA-processing protein
PRP40, putative [Ricinus communis]
Length = 886
Score = 128 bits (322), Expect(2) = 6e-51
Identities = 64/81 (79%), Positives = 70/81 (86%)
Frame = -2
Query: 962 KARRKEAVESYQALLVETIKDAQASWTESKAKLEKDPQGRATKYHLDQSDLEKLFREHVK 783
K RRKEAV S+QALLVETIKD QASWTESK +LEKDPQGR T +LD SD EKLFREHVK
Sbjct: 717 KVRRKEAVASFQALLVETIKDPQASWTESKTRLEKDPQGRGTNPNLDPSDTEKLFREHVK 776
Query: 782 MLNERCTRDFRALLAEVITAE 720
ML+ERCT +F+ALLAEVI AE
Sbjct: 777 MLHERCTNEFKALLAEVINAE 797
Score = 99.8 bits (247), Expect(2) = 6e-51
Identities = 45/88 (51%), Positives = 63/88 (71%)
Frame = -1
Query: 672 ALKERDDGKTVFTSWSTAKHLLKADVRYAKMPRKERESLWRRHVDDIQRRLKLSLNEQTE 493
A ++ +DGKTV SW+TAK +LK D RY KMPRKERE LWRRH +D+ R+ K +L+E+ +
Sbjct: 799 ASQKTEDGKTVLDSWTTAKRVLKLDPRYNKMPRKEREVLWRRHAEDMLRKQKTTLDEKED 858
Query: 492 KHSLESKNHPAVEAGKHQSGSRRNHERR 409
KH+ ++G+H SGS+R H+RR
Sbjct: 859 KHTDPRGRSSTTDSGRHLSGSKRTHDRR 886
>ref|XP_002315062.1| predicted protein [Populus trichocarpa] gi|222864102|gb|EEF01233.1|
predicted protein [Populus trichocarpa]
Length = 175
Score = 127 bits (318), Expect(2) = 5e-50
Identities = 64/81 (79%), Positives = 70/81 (86%)
Frame = -2
Query: 962 KARRKEAVESYQALLVETIKDAQASWTESKAKLEKDPQGRATKYHLDQSDLEKLFREHVK 783
K RRKEAV S+QALLVET+KD QASWTESK KL+KDPQ RAT LD SD EKLFREH+K
Sbjct: 7 KVRRKEAVASFQALLVETLKDPQASWTESKPKLDKDPQRRATHPDLDPSDTEKLFREHMK 66
Query: 782 MLNERCTRDFRALLAEVITAE 720
ML+ERCT DF+ALLAEVITAE
Sbjct: 67 MLHERCTNDFKALLAEVITAE 87
Score = 98.2 bits (243), Expect(2) = 5e-50
Identities = 46/88 (52%), Positives = 66/88 (75%)
Frame = -1
Query: 672 ALKERDDGKTVFTSWSTAKHLLKADVRYAKMPRKERESLWRRHVDDIQRRLKLSLNEQTE 493
A ++ DDGKTV SWSTAK L+K D RY KMPRKERE+LWRR+ +++ R+ K + + +
Sbjct: 89 AAQKTDDGKTVLDSWSTAKRLIKPDPRYNKMPRKERETLWRRYAEEMLRKQKFEPDPKED 148
Query: 492 KHSLESKNHPAVEAGKHQSGSRRNHERR 409
KH+ +SKN A ++G++ SGSRR ++RR
Sbjct: 149 KHT-DSKNRSANDSGRYHSGSRRTNDRR 175
>ref|XP_003540642.1| PREDICTED: transcription elongation regulator 1-like [Glycine max]
Length = 930
Score = 120 bits (300), Expect(2) = 8e-48
Identities = 61/81 (75%), Positives = 66/81 (81%)
Frame = -2
Query: 962 KARRKEAVESYQALLVETIKDAQASWTESKAKLEKDPQGRATKYHLDQSDLEKLFREHVK 783
K RRKEAV S+QALLVETIKD ASWTESK KLEKDPQ RAT LD SD EKLFREHVK
Sbjct: 762 KIRRKEAVTSFQALLVETIKDPLASWTESKPKLEKDPQRRATNPDLDPSDTEKLFREHVK 821
Query: 782 MLNERCTRDFRALLAEVITAE 720
ML ERC +FR LLAEV+T++
Sbjct: 822 MLQERCAHEFRVLLAEVLTSD 842
Score = 97.8 bits (242), Expect(2) = 8e-48
Identities = 48/88 (54%), Positives = 64/88 (72%)
Frame = -1
Query: 672 ALKERDDGKTVFTSWSTAKHLLKADVRYAKMPRKERESLWRRHVDDIQRRLKLSLNEQTE 493
A +E +DGKTV SWSTAK LLK+D RY K+PRKERE+LWRR+ +D+ RR K S + + E
Sbjct: 844 ASQETNDGKTVLNSWSTAKRLLKSDPRYNKVPRKEREALWRRYAEDMLRRQKASYDSREE 903
Query: 492 KHSLESKNHPAVEAGKHQSGSRRNHERR 409
KH+ ++K +E+ KH S R+HERR
Sbjct: 904 KHT-DAKGRTYLESSKHPLESGRSHERR 930
>ref|XP_003607201.1| Transcription elongation regulator [Medicago truncatula]
gi|355508256|gb|AES89398.1| Transcription elongation
regulator [Medicago truncatula]
Length = 1013
Score = 120 bits (302), Expect(2) = 1e-45
Identities = 61/81 (75%), Positives = 67/81 (82%)
Frame = -2
Query: 962 KARRKEAVESYQALLVETIKDAQASWTESKAKLEKDPQGRATKYHLDQSDLEKLFREHVK 783
K RRKEAV S+QALLVE IKD ASWTESK KLEKDPQGRAT LD +D+EKLFR+HVK
Sbjct: 845 KIRRKEAVTSFQALLVERIKDPMASWTESKPKLEKDPQGRATNSDLDSADMEKLFRDHVK 904
Query: 782 MLNERCTRDFRALLAEVITAE 720
ML ER RDFRALLAE +T+E
Sbjct: 905 MLQERRARDFRALLAEFLTSE 925
Score = 89.7 bits (221), Expect(2) = 1e-45
Identities = 43/88 (48%), Positives = 64/88 (72%)
Frame = -1
Query: 672 ALKERDDGKTVFTSWSTAKHLLKADVRYAKMPRKERESLWRRHVDDIQRRLKLSLNEQTE 493
A +E DDGKTV SWSTAK L+K+D RY K+P ++RE+LWRR+ +D+ RR K S + + E
Sbjct: 927 ASQETDDGKTVLNSWSTAKRLIKSDPRYNKVPSEDREALWRRYAEDMIRRQKSSHDSKEE 986
Query: 492 KHSLESKNHPAVEAGKHQSGSRRNHERR 409
KH+ +++ ++E+ K+ S R+HERR
Sbjct: 987 KHT-DARGRKSLESSKNPLESGRSHERR 1013