BLASTX nr result
ID: Cnidium21_contig00018257
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cnidium21_contig00018257
(1005 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|D9J034.1|WHY2_SOLTU RecName: Full=Single-stranded DNA-bindig ... 275 2e-71
gb|ABK94132.1| unknown [Populus trichocarpa] 258 2e-66
ref|XP_003626470.1| hypothetical protein MTR_7g116270 [Medicago ... 257 3e-66
pdb|3N1H|A Chain A, Crystal Structure Of Stwhy2 gi|302566180|pdb... 256 6e-66
pdb|3R9Y|A Chain A, Crystal Structure Of Stwhy2 K67a (Form I) gi... 254 3e-65
>sp|D9J034.1|WHY2_SOLTU RecName: Full=Single-stranded DNA-bindig protein WHY2,
mitochondrial; AltName: Full=Protein WHIRLY 2;
Short=StWHY2; Flags: Precursor
gi|298359665|gb|ADI77438.1| Why2 protein [Solanum
tuberosum]
Length = 238
Score = 275 bits (702), Expect = 2e-71
Identities = 136/228 (59%), Positives = 173/228 (75%), Gaps = 1/228 (0%)
Frame = -2
Query: 917 RAQPFFRRNAWENVANSFMEQRVMAKACISTTSQGI-SNNGKMSDRVFANYNIYKGKVAL 741
R Q ++ E V S + + A ST Q + ++ GK RVFA Y+++KGK AL
Sbjct: 11 RNQLLHKKLPGECVKGSIWQHAINTFAGFSTVRQNVVADAGKREGRVFAPYSVFKGKAAL 70
Query: 740 SASPRLPQFSKLDSGGFKVDRQGTIMLSFSPAIGERKYDWEKKQLFALSATEIGSLISLG 561
SA PRLP F++LDSGG K++R+G IML+F P++GERKYDWEK+QLFALSATE+GSLIS+G
Sbjct: 71 SAEPRLPTFNRLDSGGVKLNRRGVIMLTFWPSVGERKYDWEKRQLFALSATEVGSLISMG 130
Query: 560 PDEACEFFHDPSMKSSNAGQVRKTLQVKPYADGTGYFISLSVVNNILKISDRFTIPVTRA 381
++ EFFHDPSM SSNAGQVRK+L +KP ADG+GYFISLSVVNN LK +DRFT+PVT A
Sbjct: 131 TRDSSEFFHDPSMLSSNAGQVRKSLSIKPNADGSGYFISLSVVNNNLKTNDRFTVPVTTA 190
Query: 380 EFAVMRTAFSFVLPHILGWDQYTNQSVKNIKEDAPMVDPRVKNLEWDR 237
EFAVMRTAFSF LPHI+GWD++TN+ ++I + V P++ EWDR
Sbjct: 191 EFAVMRTAFSFALPHIMGWDRFTNRPSESISQSPSKVVPQLMEAEWDR 238
>gb|ABK94132.1| unknown [Populus trichocarpa]
Length = 229
Score = 258 bits (659), Expect = 2e-66
Identities = 125/199 (62%), Positives = 154/199 (77%), Gaps = 2/199 (1%)
Frame = -2
Query: 827 TTSQGISNNGKMS--DRVFANYNIYKGKVALSASPRLPQFSKLDSGGFKVDRQGTIMLSF 654
T IS GK S DRVFA Y+++KGK ALS P LP FSK SG +VDR+G++ML+F
Sbjct: 31 TFQASISTGGKSSIQDRVFAPYSVFKGKAALSVEPVLPTFSKFGSGNLRVDRRGSMMLTF 90
Query: 653 SPAIGERKYDWEKKQLFALSATEIGSLISLGPDEACEFFHDPSMKSSNAGQVRKTLQVKP 474
PAIGERKYD+EK+Q FALSATE+GSLIS GP ++CEFFHDPSM SSNAGQVRK L +KP
Sbjct: 91 LPAIGERKYDYEKRQKFALSATEVGSLISTGPKDSCEFFHDPSMLSSNAGQVRKNLSIKP 150
Query: 473 YADGTGYFISLSVVNNILKISDRFTIPVTRAEFAVMRTAFSFVLPHILGWDQYTNQSVKN 294
+ADG+GYF+SLSVVNNILK ++RFT+PVT AEF V++TA SF LPHI+GWD+ T
Sbjct: 151 HADGSGYFVSLSVVNNILKTTERFTVPVTTAEFTVLKTACSFALPHIMGWDRLTTPLPGT 210
Query: 293 IKEDAPMVDPRVKNLEWDR 237
+ VDP++ +LEWD+
Sbjct: 211 LASKLSKVDPQMPDLEWDK 229
>ref|XP_003626470.1| hypothetical protein MTR_7g116270 [Medicago truncatula]
gi|355501485|gb|AES82688.1| hypothetical protein
MTR_7g116270 [Medicago truncatula]
gi|388497124|gb|AFK36628.1| unknown [Medicago
truncatula]
Length = 226
Score = 257 bits (657), Expect = 3e-66
Identities = 125/222 (56%), Positives = 164/222 (73%)
Frame = -2
Query: 902 FRRNAWENVANSFMEQRVMAKACISTTSQGISNNGKMSDRVFANYNIYKGKVALSASPRL 723
F R + N +E + A+ + T+ S G SDR+FA Y++YKGK A S SP L
Sbjct: 8 FSRMLHSSSRNHLLEV-LYARDFSTATNNNYSAKGYTSDRIFAPYSVYKGKAAFSLSPCL 66
Query: 722 PQFSKLDSGGFKVDRQGTIMLSFSPAIGERKYDWEKKQLFALSATEIGSLISLGPDEACE 543
P F+KLDSG VDR G+IM+SF PAIGERKYDWEK+Q+FALSATE+GSLI++GP ++CE
Sbjct: 67 PTFTKLDSGALVVDRHGSIMMSFMPAIGERKYDWEKRQIFALSATEVGSLIAIGPQDSCE 126
Query: 542 FFHDPSMKSSNAGQVRKTLQVKPYADGTGYFISLSVVNNILKISDRFTIPVTRAEFAVMR 363
FFHDPSMKSSNAGQVRK+L +KP+++ GYF+SLSVVN++L D F++PVT AEFAVM+
Sbjct: 127 FFHDPSMKSSNAGQVRKSLSIKPHSN--GYFVSLSVVNSVLNTKDNFSVPVTTAEFAVMK 184
Query: 362 TAFSFVLPHILGWDQYTNQSVKNIKEDAPMVDPRVKNLEWDR 237
TA SF LPHI+GWD+ TNQ P ++ ++ +LEW++
Sbjct: 185 TACSFALPHIMGWDRLTNQQSSGTVSFQPKMNSQILDLEWEK 226
>pdb|3N1H|A Chain A, Crystal Structure Of Stwhy2 gi|302566180|pdb|3N1I|A Chain
A, Crystal Structure Of A Stwhy2-Ere32 Complex
gi|302566182|pdb|3N1J|A Chain A, Crystal Structure Of A
Stwhy2-Dt32 Complex gi|302566184|pdb|3N1K|A Chain A,
Crystal Structure Of A Stwhy2-Cere32 Complex
gi|302566186|pdb|3N1L|A Chain A, Crystal Structure Of A
Stwhy2-Rcere32 Complex
Length = 178
Score = 256 bits (654), Expect = 6e-66
Identities = 120/173 (69%), Positives = 151/173 (87%)
Frame = -2
Query: 812 ISNNGKMSDRVFANYNIYKGKVALSASPRLPQFSKLDSGGFKVDRQGTIMLSFSPAIGER 633
+++ GK RVFA Y+++KGK ALSA PRLP F++LDSGG K++R+G IML+F P++GER
Sbjct: 1 MADAGKREGRVFAPYSVFKGKAALSAEPRLPTFNRLDSGGVKLNRRGVIMLTFWPSVGER 60
Query: 632 KYDWEKKQLFALSATEIGSLISLGPDEACEFFHDPSMKSSNAGQVRKTLQVKPYADGTGY 453
KYDWEK+QLFALSATE+GSLIS+G ++ EFFHDPSM SSNAGQVRK+L +KP ADG+GY
Sbjct: 61 KYDWEKRQLFALSATEVGSLISMGTRDSSEFFHDPSMLSSNAGQVRKSLSIKPNADGSGY 120
Query: 452 FISLSVVNNILKISDRFTIPVTRAEFAVMRTAFSFVLPHILGWDQYTNQSVKN 294
FISLSVVNN LK +DRFT+PVT AEFAVMRTAFSF LPHI+GWD++TN+ +++
Sbjct: 121 FISLSVVNNNLKTNDRFTVPVTTAEFAVMRTAFSFALPHIMGWDRFTNRPLEH 173
>pdb|3R9Y|A Chain A, Crystal Structure Of Stwhy2 K67a (Form I)
gi|347948613|pdb|3R9Z|A Chain A, Crystal Structure Of
Stwhy2 K67a (Form Ii) gi|347948614|pdb|3RA0|A Chain A,
Crystal Structure Of A Stwhy2 K67a-Dt32 Complex
Length = 178
Score = 254 bits (648), Expect = 3e-65
Identities = 119/173 (68%), Positives = 150/173 (86%)
Frame = -2
Query: 812 ISNNGKMSDRVFANYNIYKGKVALSASPRLPQFSKLDSGGFKVDRQGTIMLSFSPAIGER 633
+++ GK RVFA Y+++KG ALSA PRLP F++LDSGG K++R+G IML+F P++GER
Sbjct: 1 MADAGKREGRVFAPYSVFKGAAALSAEPRLPTFNRLDSGGVKLNRRGVIMLTFWPSVGER 60
Query: 632 KYDWEKKQLFALSATEIGSLISLGPDEACEFFHDPSMKSSNAGQVRKTLQVKPYADGTGY 453
KYDWEK+QLFALSATE+GSLIS+G ++ EFFHDPSM SSNAGQVRK+L +KP ADG+GY
Sbjct: 61 KYDWEKRQLFALSATEVGSLISMGTRDSSEFFHDPSMLSSNAGQVRKSLSIKPNADGSGY 120
Query: 452 FISLSVVNNILKISDRFTIPVTRAEFAVMRTAFSFVLPHILGWDQYTNQSVKN 294
FISLSVVNN LK +DRFT+PVT AEFAVMRTAFSF LPHI+GWD++TN+ +++
Sbjct: 121 FISLSVVNNNLKTNDRFTVPVTTAEFAVMRTAFSFALPHIMGWDRFTNRPLEH 173