BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00018245
         (1471 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putativ...   814   0.0  
gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhodode...   808   0.0  
ref|XP_002324332.1| predicted protein [Populus trichocarpa] gi|2...   805   0.0  
ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D sub...   804   0.0  
ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D sub...   800   0.0  

>ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putative [Ricinus communis]
            gi|223545372|gb|EEF46877.1| DNA-directed RNA polymerase
            subunit, putative [Ricinus communis]
          Length = 1203

 Score =  814 bits (2103), Expect = 0.0
 Identities = 397/494 (80%), Positives = 436/494 (88%), Gaps = 4/494 (0%)
 Frame = +1

Query: 1    AWGIKYLMMQTSGDAPKKYTHCELDMSFLLGLSAGLTPFCNHDHARRALYQSQKHSHQAI 180
            AWGIK+L+    G    KYTHCELDMSFLLGLS G+ PF NHDHARR LYQ+QKHS QAI
Sbjct: 696  AWGIKFLLSGVDGKQSLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAI 755

Query: 181  GFSSTNSSIRVDTNTNQLYYPQRPLFRTMLSECLGKAENSR----MLPKPEFYNGQCAIV 348
            GF +TN +IRVDT ++QLYYPQRPLFRT+ S+CLGK  ++R    ++PKPE YNGQ AIV
Sbjct: 756  GFPTTNPNIRVDTLSHQLYYPQRPLFRTVTSDCLGKPGDTRGHNGIVPKPELYNGQNAIV 815

Query: 349  AVNVHLGYNQEDSLVMNRSSLERGMFRSEHIRSYKADVNNTEATLKKKKIEDAINFGKIP 528
            AVNVHLGYNQEDSLVMNR+SLERGMFRSEHIRSYKADV+N E   K++K +D +NFGKIP
Sbjct: 816  AVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKADVDNKELLDKRRKYDDNVNFGKIP 875

Query: 529  SKIGRVDSLDEDGFPFIGANLQTGDIVIGKHAESGVDQSVKLKHTEKGMVQKVILSSNDE 708
            SKIGRVDSLD+DGFPFIGANLQ+GDIVIG+ AESG D S+KLKHTE+GMVQKV+LSSNDE
Sbjct: 876  SKIGRVDSLDDDGFPFIGANLQSGDIVIGRCAESGPDHSIKLKHTERGMVQKVVLSSNDE 935

Query: 709  GKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTAQGIVPDIVINPHAFPS 888
            GKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFT QGIVPDIVINPH+FPS
Sbjct: 936  GKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTRQGIVPDIVINPHSFPS 995

Query: 889  RQTPGQXXXXXXXXXXXXXXXXRYATPFSTVSVDAITNQLHRAGFSRWGNERVYNGRTGE 1068
            RQTPGQ                +YATPFST+SV+AITNQLHRAGFSRWGNERVYNGRTGE
Sbjct: 996  RQTPGQLLEAALGKGIACGGSMKYATPFSTLSVEAITNQLHRAGFSRWGNERVYNGRTGE 1055

Query: 1069 MIRSLVFMGPTCYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLI 1248
            M+RSL+FMGPT YQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLI
Sbjct: 1056 MVRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLI 1115

Query: 1249 AHGASANLHERLFTLSDCSQMHICRKCKHPANVIQRTVMGGRKIRGPYCRYCQSSEDIIK 1428
            AHGASANLHERLFTLSD SQMHIC+KCK+ ANVIQR V GGRKIRGPYCR C+S ++I+K
Sbjct: 1116 AHGASANLHERLFTLSDSSQMHICQKCKNVANVIQRAVPGGRKIRGPYCRVCESVDEIVK 1175

Query: 1429 VSVPYGAKLLCQEL 1470
            V+VPYGAKLLCQEL
Sbjct: 1176 VNVPYGAKLLCQEL 1189


>gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhododendron macrophyllum]
          Length = 1019

 Score =  808 bits (2087), Expect = 0.0
 Identities = 389/494 (78%), Positives = 435/494 (88%), Gaps = 4/494 (0%)
 Frame = +1

Query: 1    AWGIKYLMMQTSGDAPKKYTHCELDMSFLLGLSAGLTPFCNHDHARRALYQSQKHSHQAI 180
            AWGI YL M+    A  KYTHCELDMSFLLGLSA + PF NHDHARR LYQS+KHS QA+
Sbjct: 512  AWGINYLFMENEAKATVKYTHCELDMSFLLGLSAAIIPFANHDHARRVLYQSEKHSQQAM 571

Query: 181  GFSSTNSSIRVDTNTNQLYYPQRPLFRTMLSECLGKAE----NSRMLPKPEFYNGQCAIV 348
            GF++TN +IRVDTNT+QLYYPQRPLFRTM+S+CLGK      ++ ++P+ E++NGQCAIV
Sbjct: 572  GFNTTNPNIRVDTNTHQLYYPQRPLFRTMVSDCLGKPGYPLGHNGIVPRAEYFNGQCAIV 631

Query: 349  AVNVHLGYNQEDSLVMNRSSLERGMFRSEHIRSYKADVNNTEATLKKKKIEDAINFGKIP 528
            AVNVHLGYNQEDSLVMNR+SLERGMFRSEHIRSYKADV+N E+  KK K ED++NFGK+ 
Sbjct: 632  AVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKADVDNKESVGKKPKFEDSVNFGKVQ 691

Query: 529  SKIGRVDSLDEDGFPFIGANLQTGDIVIGKHAESGVDQSVKLKHTEKGMVQKVILSSNDE 708
            SKIGRVDSLD+DGFPFIGANLQ GDIV+G+ AESG D S+KLKHTE+GMVQKV+LS+NDE
Sbjct: 692  SKIGRVDSLDDDGFPFIGANLQNGDIVVGRCAESGADHSIKLKHTERGMVQKVVLSANDE 751

Query: 709  GKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTAQGIVPDIVINPHAFPS 888
            GKNFAVVSLRQVR+PCLGDKFSSMHGQKGVLGFLESQENFPFT QGIVPDIV+NPHAFPS
Sbjct: 752  GKNFAVVSLRQVRTPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVVNPHAFPS 811

Query: 889  RQTPGQXXXXXXXXXXXXXXXXRYATPFSTVSVDAITNQLHRAGFSRWGNERVYNGRTGE 1068
            RQTPGQ                +YATPFST+SVDA+T+QLHRAGFSRWG+ERVYNGRTGE
Sbjct: 812  RQTPGQLLEAALGKGIACGGLQKYATPFSTLSVDAVTDQLHRAGFSRWGSERVYNGRTGE 871

Query: 1069 MIRSLVFMGPTCYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLI 1248
            MI SLVFMGPT YQRL HM+EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLI
Sbjct: 872  MIHSLVFMGPTFYQRLTHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLI 931

Query: 1249 AHGASANLHERLFTLSDCSQMHICRKCKHPANVIQRTVMGGRKIRGPYCRYCQSSEDIIK 1428
            AHGA+ANLHERLFTLSD SQMHICRKC + ANVIQR V GGRKIRGPYCR+C+S E+I++
Sbjct: 932  AHGAAANLHERLFTLSDSSQMHICRKCNNIANVIQRAVPGGRKIRGPYCRFCESVEEIVR 991

Query: 1429 VSVPYGAKLLCQEL 1470
            V+VPYGAKLL QEL
Sbjct: 992  VNVPYGAKLLAQEL 1005


>ref|XP_002324332.1| predicted protein [Populus trichocarpa] gi|222865766|gb|EEF02897.1|
            predicted protein [Populus trichocarpa]
          Length = 1160

 Score =  805 bits (2078), Expect = 0.0
 Identities = 393/490 (80%), Positives = 431/490 (87%)
 Frame = +1

Query: 1    AWGIKYLMMQTSGDAPKKYTHCELDMSFLLGLSAGLTPFCNHDHARRALYQSQKHSHQAI 180
            AWGIK+L+    G  P KY+HCELDMSFLLGLS G+ PF NHDHARR LYQ+QKHS QAI
Sbjct: 664  AWGIKFLLADIEGKQPMKYSHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAI 723

Query: 181  GFSSTNSSIRVDTNTNQLYYPQRPLFRTMLSECLGKAENSRMLPKPEFYNGQCAIVAVNV 360
            GFS+TN +IRVDT ++QL+YPQRPLFRTM+S+CL       +LPKPE +NGQ AIVAVNV
Sbjct: 724  GFSTTNPNIRVDTLSHQLHYPQRPLFRTMISDCL-------VLPKPELFNGQNAIVAVNV 776

Query: 361  HLGYNQEDSLVMNRSSLERGMFRSEHIRSYKADVNNTEATLKKKKIEDAINFGKIPSKIG 540
            HLGYNQEDSLVMNR+SLERGMFRSEHIRSYKA+V+N E T K++K ED+I FGKI SKIG
Sbjct: 777  HLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKELTDKRRKSEDSITFGKIQSKIG 836

Query: 541  RVDSLDEDGFPFIGANLQTGDIVIGKHAESGVDQSVKLKHTEKGMVQKVILSSNDEGKNF 720
            RVDSLD+DGFPFIGAN+Q+GDIVIGK AESG D SVKLKHTE+GMVQKV+LSSNDEGKNF
Sbjct: 837  RVDSLDDDGFPFIGANMQSGDIVIGKCAESGADHSVKLKHTERGMVQKVVLSSNDEGKNF 896

Query: 721  AVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTAQGIVPDIVINPHAFPSRQTP 900
            AVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFT QG+VPDIVINPHAFPSRQTP
Sbjct: 897  AVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGVVPDIVINPHAFPSRQTP 956

Query: 901  GQXXXXXXXXXXXXXXXXRYATPFSTVSVDAITNQLHRAGFSRWGNERVYNGRTGEMIRS 1080
            GQ                RYATPFST+SVD I +QLHRA FSRWGNERVYNGRTGEM+RS
Sbjct: 957  GQLLEAALGKGIACGGSKRYATPFSTLSVDDIIDQLHRAKFSRWGNERVYNGRTGEMVRS 1016

Query: 1081 LVFMGPTCYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA 1260
            L+FMGPT YQRL+HMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA
Sbjct: 1017 LIFMGPTFYQRLVHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA 1076

Query: 1261 SANLHERLFTLSDCSQMHICRKCKHPANVIQRTVMGGRKIRGPYCRYCQSSEDIIKVSVP 1440
            SANLHERLFTLSD S+MHIC+KCK+ ANVIQR V GGRKIRGPYCR C+S +D++KVSVP
Sbjct: 1077 SANLHERLFTLSDSSEMHICQKCKNVANVIQRGVPGGRKIRGPYCRVCESVDDLVKVSVP 1136

Query: 1441 YGAKLLCQEL 1470
            YGAKLLCQEL
Sbjct: 1137 YGAKLLCQEL 1146


>ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
            vinifera]
          Length = 1198

 Score =  804 bits (2076), Expect = 0.0
 Identities = 388/494 (78%), Positives = 441/494 (89%), Gaps = 4/494 (0%)
 Frame = +1

Query: 1    AWGIKYLMMQTSGDAPKKYTHCELDMSFLLGLSAGLTPFCNHDHARRALYQSQKHSHQAI 180
            AWGIKYL+ +   D P KYTHCELDMSFLLGLS G+ P+ NHDHARR LYQS+KHS QAI
Sbjct: 692  AWGIKYLL-KGHDDPPVKYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAI 750

Query: 181  GFSSTNSSIRVDTNTNQLYYPQRPLFRTMLSECLGKAENSR----MLPKPEFYNGQCAIV 348
            GFS+TN +IRVDT ++QLYYPQRPLFRTM+S+CLGK   S     ++P+PE++NGQ AIV
Sbjct: 751  GFSTTNPNIRVDTLSHQLYYPQRPLFRTMISDCLGKPGYSEGHKGIVPRPEYFNGQIAIV 810

Query: 349  AVNVHLGYNQEDSLVMNRSSLERGMFRSEHIRSYKADVNNTEATLKKKKIEDAINFGKIP 528
            AVNVHLGYNQEDSLVMNR+SLERGMFRSEHIRSYK++V+N E+  KK+K ED+++FGK+ 
Sbjct: 811  AVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKSEVDNNESLDKKRKSEDSVHFGKMQ 870

Query: 529  SKIGRVDSLDEDGFPFIGANLQTGDIVIGKHAESGVDQSVKLKHTEKGMVQKVILSSNDE 708
            SKIGRVDSLD+DGFPFIGANLQ GDIVIG+ AESGVD S+KLKHTE+GMVQKV++S+ND+
Sbjct: 871  SKIGRVDSLDDDGFPFIGANLQNGDIVIGRCAESGVDHSIKLKHTERGMVQKVVVSANDD 930

Query: 709  GKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTAQGIVPDIVINPHAFPS 888
            GKNFAVVSLRQVR+PCLGDKFSSMHGQKGVLGFLESQENFPFT QGIVPDIVINPHAFPS
Sbjct: 931  GKNFAVVSLRQVRTPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPS 990

Query: 889  RQTPGQXXXXXXXXXXXXXXXXRYATPFSTVSVDAITNQLHRAGFSRWGNERVYNGRTGE 1068
            RQTPGQ                R+ATPFST+SVDAI +QLHRAGFSRWG+ERVYNGRTGE
Sbjct: 991  RQTPGQLLEAALGKGIACGGLLRHATPFSTLSVDAIADQLHRAGFSRWGHERVYNGRTGE 1050

Query: 1069 MIRSLVFMGPTCYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLI 1248
            M+RSL+FMGPT YQRLIHMAEDKVKFRNTGPVHPLTRQPV+DRKRFGGIKFGEMERDCLI
Sbjct: 1051 MLRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVSDRKRFGGIKFGEMERDCLI 1110

Query: 1249 AHGASANLHERLFTLSDCSQMHICRKCKHPANVIQRTVMGGRKIRGPYCRYCQSSEDIIK 1428
            AHGA+ANLHERLFTLSD + MHICR+CK+ +NVIQR+V GGRK+RGPYCRYC+SSE+I+K
Sbjct: 1111 AHGAAANLHERLFTLSDSAYMHICRRCKNISNVIQRSVAGGRKVRGPYCRYCESSEEIVK 1170

Query: 1429 VSVPYGAKLLCQEL 1470
            V+VPYGAKLLCQEL
Sbjct: 1171 VNVPYGAKLLCQEL 1184


>ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cucumis
            sativus]
          Length = 1197

 Score =  800 bits (2065), Expect = 0.0
 Identities = 391/494 (79%), Positives = 438/494 (88%), Gaps = 4/494 (0%)
 Frame = +1

Query: 1    AWGIKYLMMQTSGDAPKKYTHCELDMSFLLGLSAGLTPFCNHDHARRALYQSQKHSHQAI 180
            AW IK+LM     +   KY+HCELDMSFLLGLS GL PF NHDHARRAL+QSQKHS+QAI
Sbjct: 693  AWSIKHLM---EDEGTTKYSHCELDMSFLLGLSCGLVPFANHDHARRALFQSQKHSNQAI 749

Query: 181  GFSSTNSSIRVDTNTNQLYYPQRPLFRTMLSECLGK----AENSRMLPKPEFYNGQCAIV 348
            GFS TNS+ RVDT ++QL+YPQRPLFRTM ++CLG     + ++ +LPKPEFYNGQ AIV
Sbjct: 750  GFSPTNSNFRVDTLSHQLHYPQRPLFRTMTADCLGTPGYLSSHAGILPKPEFYNGQNAIV 809

Query: 349  AVNVHLGYNQEDSLVMNRSSLERGMFRSEHIRSYKADVNNTEATLKKKKIEDAINFGKIP 528
            AVNVHLGYNQEDSLVMNR+SLERGMFRSEHIRSYKA+V+N E++ K++K +DAINFGK  
Sbjct: 810  AVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKESSEKRRKSDDAINFGKTQ 869

Query: 529  SKIGRVDSLDEDGFPFIGANLQTGDIVIGKHAESGVDQSVKLKHTEKGMVQKVILSSNDE 708
            SKIGRVDSLD+DGFP+IGANLQ+GDIVIG+ AESG D S+KLKHTEKGMVQKV+LSSND+
Sbjct: 870  SKIGRVDSLDDDGFPYIGANLQSGDIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDD 929

Query: 709  GKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTAQGIVPDIVINPHAFPS 888
            GKN+AVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFT QGIVPDIVINPHAFPS
Sbjct: 930  GKNYAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPS 989

Query: 889  RQTPGQXXXXXXXXXXXXXXXXRYATPFSTVSVDAITNQLHRAGFSRWGNERVYNGRTGE 1068
            RQTPGQ                +YATPFST SVDAIT+QLHRAGFSRWG+ERVYNGRTGE
Sbjct: 990  RQTPGQLLEAALGKGIAAGGSLKYATPFSTPSVDAITDQLHRAGFSRWGSERVYNGRTGE 1049

Query: 1069 MIRSLVFMGPTCYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLI 1248
            M+RSL+FMGPT YQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLI
Sbjct: 1050 MMRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLI 1109

Query: 1249 AHGASANLHERLFTLSDCSQMHICRKCKHPANVIQRTVMGGRKIRGPYCRYCQSSEDIIK 1428
            AHGASANLHERLFTLSD SQMH+C+KCK+ A+VIQR+V GGRK+RGPYCR C+S +DI++
Sbjct: 1110 AHGASANLHERLFTLSDSSQMHVCQKCKNVASVIQRSVAGGRKMRGPYCRVCESFDDIVR 1169

Query: 1429 VSVPYGAKLLCQEL 1470
            V+VPYGAKLLCQEL
Sbjct: 1170 VNVPYGAKLLCQEL 1183