BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00018085
         (1310 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274318.1| PREDICTED: pentatricopeptide repeat-containi...   341   2e-91
ref|XP_004140747.1| PREDICTED: pentatricopeptide repeat-containi...   327   4e-87
ref|XP_002513638.1| pentatricopeptide repeat-containing protein,...   320   5e-85
ref|XP_002327501.1| predicted protein [Populus trichocarpa] gi|2...   313   8e-83
ref|NP_567622.1| pentatricopeptide repeat-containing protein [Ar...   308   2e-81

>ref|XP_002274318.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21190
           [Vitis vinifera] gi|302143769|emb|CBI22630.3| unnamed
           protein product [Vitis vinifera]
          Length = 295

 Score =  341 bits (875), Expect = 2e-91
 Identities = 169/241 (70%), Positives = 196/241 (81%)
 Frame = +1

Query: 247 MLSLRFCPAVLAKRSESVQFWRRNSSPVVVCAAKGPRQRYPRVWKTKTRIGTISKSKKLF 426
           ML LR+ PA + +R ++V+   +N   +VVC AKGPR RYPRVWKT+ RIGTISKS KL 
Sbjct: 1   MLCLRYSPATITRRLDAVEI-PKNPRSIVVCGAKGPRPRYPRVWKTRQRIGTISKSAKLV 59

Query: 427 DTIKELSNVKEEVYGALDSFIAWELEFPLITVKKALKALENESEWKRIIQVTKWMLSKGQ 606
           D IK LSNVKEEVYGALDSFIAWELEFPLITVKKALK LE++ EWKRIIQVTKWMLSKGQ
Sbjct: 60  DCIKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLEDQKEWKRIIQVTKWMLSKGQ 119

Query: 607 GRTMGSYYMLLNALAEDGRLEEAEELWRKLFTENLESMPRNFFDKMISIYYKREMHDKMF 786
           GRTMGSY+ LLNALAEDGRL+EAEELW KLF+ENLES+PR F+DKMISIYY+R+MH+KMF
Sbjct: 120 GRTMGSYFTLLNALAEDGRLDEAEELWTKLFSENLESLPRVFYDKMISIYYRRDMHEKMF 179

Query: 787 EVFADMDELGVKPTVSVVAMVGDVFQKLNMLDXXXXXXXXXXXXXXXXXXIQGKRVKIRS 966
           E+FADM+ELG++P  S+V MVGDVFQKL MLD                  I+GKRV+IR+
Sbjct: 180 EIFADMEELGIRPNTSIVKMVGDVFQKLGMLDKYEKLQKKYPPPKWEYRYIKGKRVRIRA 239

Query: 967 K 969
           K
Sbjct: 240 K 240


>ref|XP_004140747.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21190-like
            [Cucumis sativus]
          Length = 331

 Score =  327 bits (838), Expect = 4e-87
 Identities = 176/286 (61%), Positives = 211/286 (73%), Gaps = 5/286 (1%)
 Frame = +1

Query: 244  KMLSLRFCPAVLAKRSESVQF-WRRNSSPVVVCAAKGPRQRYPRVWKTKTRIGTISKSKK 420
            +ML+L +   V +KR ESV F W  +SS  VVCAAKGPR RYPRVWKTK RIGTISK+ K
Sbjct: 18   RMLTLVYTFPVTSKRIESVNFSWCPSSS--VVCAAKGPRPRYPRVWKTKKRIGTISKAAK 75

Query: 421  LFDTIKELSNVKEEVYGALDSFIAWELEFPLITVKKALKALENESEWKRIIQVTKWMLSK 600
            L D +K LSNVKEEVYGALDSFIAWELEFPLITVKKALK LEN+ EWKRIIQ+TKWMLSK
Sbjct: 76   LVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSK 135

Query: 601  GQGRTMGSYYMLLNALAEDGRLEEAEELWRKLFTENLESMPRNFFDKMISIYYKREMHDK 780
            GQGRTMGSY+ LLNALAEDGRL+EAEELW KLF+++LES+PR FF KMIS+YY + MHDK
Sbjct: 136  GQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFFHKMISLYYDQAMHDK 195

Query: 781  MFEVFADMDELGVKPTVSVVAMVGDVFQKLNMLDXXXXXXXXXXXXXXXXXXIQGKRVKI 960
            +FEVFADM+ELGV+P +++V  VG+VFQ+L MLD                  I+GKRVKI
Sbjct: 196  LFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPPPKWEYRYIKGKRVKI 255

Query: 961  RSKPIDRSRYVRNPV---IKADEETLGTLPES-CESTDVSLNKPSD 1086
            R+K +  +    N +    K +  +  ++ E+   S D SL    D
Sbjct: 256  RAKYLSENGNSNNGLSEHAKMEHSSTNSIDEAEITSEDSSLEDDED 301


>ref|XP_002513638.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223547546|gb|EEF49041.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 359

 Score =  320 bits (820), Expect = 5e-85
 Identities = 182/322 (56%), Positives = 220/322 (68%), Gaps = 2/322 (0%)
 Frame = +1

Query: 181  KETRKKM--KIYEEKKTMPRFL*KMLSLRFCPAVLAKRSESVQFWRRNSSPVVVCAAKGP 354
            KE  +K   K  E+KK       +ML LR    +++ R E ++F +  SS  VV A KG 
Sbjct: 11   KENARKQEGKGNEKKKRKILSWRQMLCLRPPLPLISTRFEVIKFSKSTSS--VVSALKGA 68

Query: 355  RQRYPRVWKTKTRIGTISKSKKLFDTIKELSNVKEEVYGALDSFIAWELEFPLITVKKAL 534
            R R PRVWKTK RIGTISKS KL + IK LSNVKEEVYGALDS IAWELEFPLI VKKAL
Sbjct: 69   RPRAPRVWKTKPRIGTISKSAKLVECIKGLSNVKEEVYGALDSLIAWELEFPLIAVKKAL 128

Query: 535  KALENESEWKRIIQVTKWMLSKGQGRTMGSYYMLLNALAEDGRLEEAEELWRKLFTENLE 714
            K LENE EWKRIIQV KWMLSKGQGRTMG+Y+ LLNALAED RL+EAEELW KLF++NLE
Sbjct: 129  KTLENEQEWKRIIQVIKWMLSKGQGRTMGTYFTLLNALAEDERLDEAEELWTKLFSDNLE 188

Query: 715  SMPRNFFDKMISIYYKREMHDKMFEVFADMDELGVKPTVSVVAMVGDVFQKLNMLDXXXX 894
              PRNFFDKMISIYYKREMH+KMFE+FADM+ELGV+P+VS+V M+G VFQKL MLD    
Sbjct: 189  GTPRNFFDKMISIYYKREMHEKMFEIFADMEELGVRPSVSIVNMMGSVFQKLGMLDKYRK 248

Query: 895  XXXXXXXXXXXXXXIQGKRVKIRSKPIDRSRYVRNPVIKADEETLGTLPESCESTDVSLN 1074
                          I+GKRV++R+K ++      N  +  + ET     +  E  +  LN
Sbjct: 249  LKKKYPPPKWEYRYIKGKRVRLRAKQVNEF-LGANESVNQNAETPYISNKLNEEDNTKLN 307

Query: 1075 KPSDNLYEHGVGESSTIKHSES 1140
            + +     + + E S+ K SE+
Sbjct: 308  EANVEEDLNELDEESSTKSSEA 329


>ref|XP_002327501.1| predicted protein [Populus trichocarpa] gi|222836055|gb|EEE74476.1|
            predicted protein [Populus trichocarpa]
          Length = 229

 Score =  313 bits (801), Expect = 8e-83
 Identities = 156/230 (67%), Positives = 183/230 (79%)
 Frame = +1

Query: 334  VCAAKGPRQRYPRVWKTKTRIGTISKSKKLFDTIKELSNVKEEVYGALDSFIAWELEFPL 513
            VCAAKGPR RYPRVWKTK RIGTISKS KL D IK LSNVKEEVYGALDSF+AWELEFPL
Sbjct: 1    VCAAKGPRPRYPRVWKTKRRIGTISKSAKLVDCIKGLSNVKEEVYGALDSFVAWELEFPL 60

Query: 514  ITVKKALKALENESEWKRIIQVTKWMLSKGQGRTMGSYYMLLNALAEDGRLEEAEELWRK 693
            I VKKAL+ALE + EWKRIIQVTKWMLSKGQGRTMG+Y+ L+NALAEDGRL+E EELW K
Sbjct: 61   IAVKKALRALEEQQEWKRIIQVTKWMLSKGQGRTMGTYFTLMNALAEDGRLDEVEELWTK 120

Query: 694  LFTENLESMPRNFFDKMISIYYKREMHDKMFEVFADMDELGVKPTVSVVAMVGDVFQKLN 873
            LF++ LE  PR  FDKMISIYYKR+MHD++FE+FADM+ELG++P+VS+V MVG+VFQ+L 
Sbjct: 121  LFSQYLEGTPRMMFDKMISIYYKRDMHDQIFEIFADMEELGLRPSVSIVNMVGNVFQRLG 180

Query: 874  MLDXXXXXXXXXXXXXXXXXXIQGKRVKIRSKPIDRSRYVRNPVIKADEE 1023
            M+D                  I+GKRV++R+K  + +  V N V   DEE
Sbjct: 181  MMDKYEKLKKKYPPPKWIYRYIKGKRVRVRAKNDNEAGDV-NSVASGDEE 229


>ref|NP_567622.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|75246109|sp|Q8LG95.1|PP332_ARATH RecName:
            Full=Pentatricopeptide repeat-containing protein
            At4g21190; AltName: Full=Protein EMBRYO DEFECTIVE 1417
            gi|21618230|gb|AAM67280.1| unknown [Arabidopsis thaliana]
            gi|51969238|dbj|BAD43311.1| putative protein [Arabidopsis
            thaliana] gi|51971351|dbj|BAD44340.1| putative protein
            [Arabidopsis thaliana] gi|51971365|dbj|BAD44347.1|
            putative protein [Arabidopsis thaliana]
            gi|332659017|gb|AEE84417.1| pentatricopeptide
            repeat-containing protein [Arabidopsis thaliana]
          Length = 307

 Score =  308 bits (790), Expect = 2e-81
 Identities = 166/299 (55%), Positives = 205/299 (68%), Gaps = 2/299 (0%)
 Frame = +1

Query: 247  MLSLRFCPA--VLAKRSESVQFWRRNSSPVVVCAAKGPRQRYPRVWKTKTRIGTISKSKK 420
            MLSLR+     +L  R  S + + +  + VVVCAA+GPR R PRVWKT+ RIGTISK+ K
Sbjct: 1    MLSLRYSLPYLLLQTRESSTKLFTKKPNNVVVCAARGPRPRSPRVWKTRKRIGTISKAAK 60

Query: 421  LFDTIKELSNVKEEVYGALDSFIAWELEFPLITVKKALKALENESEWKRIIQVTKWMLSK 600
            +   IK LSNVKEEVYGALDSFIAWELEFPL+ VKKAL  LE+E EWK+IIQVTKWMLSK
Sbjct: 61   MIACIKGLSNVKEEVYGALDSFIAWELEFPLVIVKKALVILEDEKEWKKIIQVTKWMLSK 120

Query: 601  GQGRTMGSYYMLLNALAEDGRLEEAEELWRKLFTENLESMPRNFFDKMISIYYKREMHDK 780
            GQGRTMG+Y+ LLNALAED RL+EAEELW KLF E+LE  PR FF+KMISIYYKR+MH K
Sbjct: 121  GQGRTMGTYFSLLNALAEDNRLDEAEELWNKLFMEHLEGTPRKFFNKMISIYYKRDMHQK 180

Query: 781  MFEVFADMDELGVKPTVSVVAMVGDVFQKLNMLDXXXXXXXXXXXXXXXXXXIQGKRVKI 960
            +FEVFADM+ELGVKP V++V+MVG VF KL M D                  I+G+RVK+
Sbjct: 181  LFEVFADMEELGVKPNVAIVSMVGKVFVKLEMKDKYEKLMKKYPPPQWEFRYIKGRRVKV 240

Query: 961  RSKPIDRSRYVRNPVIKADEETLGTLPESCESTDVSLNKPSDNLYEHGVGESSTIKHSE 1137
            ++K ++         + +DE+ +    ES E     L++  ++  E   G    I   E
Sbjct: 241  KAKQLNELSEGEGG-LSSDEDKIDNEIESEEEDGEDLSEEEEDEKELLGGSQGQITSRE 298