BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00017884
         (278 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283656.1| PREDICTED: putative DNA repair protein RAD23...   100   1e-19
ref|XP_002329330.1| predicted protein [Populus trichocarpa] gi|2...    97   2e-18
emb|CAB51544.1| RAD23 protein [Solanum lycopersicum var. cerasif...    96   2e-18
dbj|BAC76393.1| RAD23-like protein [Arabidopsis thaliana]              95   7e-18
ref|NP_186903.1| putative DNA repair protein RAD23-3 [Arabidopsi...    95   7e-18

>ref|XP_002283656.1| PREDICTED: putative DNA repair protein RAD23-3 isoform 1 [Vitis
           vinifera] gi|296087286|emb|CBI33660.3| unnamed protein
           product [Vitis vinifera]
          Length = 381

 Score =  100 bits (249), Expect = 1e-19
 Identities = 56/93 (60%), Positives = 60/93 (64%), Gaps = 1/93 (1%)
 Frame = -3

Query: 276 RAAFNNPERAVDYLYSGI-XXXXXXXXXXXXXXXXXXXXXXXXXXXXQTTVPHGGPNANP 100
           RAA+NNPERAV+YLYSGI                             QTTV   GPNANP
Sbjct: 179 RAAYNNPERAVEYLYSGIPEQAEGPPAARPPASGLAVNLPTQAPQGPQTTVASSGPNANP 238

Query: 99  LNLFPQGLPNMGSNASAGNLDFLRNSPQFQALR 1
           L+LFPQGLP+MGSNASAG LDFLRNSPQFQALR
Sbjct: 239 LDLFPQGLPSMGSNASAGTLDFLRNSPQFQALR 271


>ref|XP_002329330.1| predicted protein [Populus trichocarpa] gi|222870784|gb|EEF07915.1|
           predicted protein [Populus trichocarpa]
          Length = 384

 Score = 96.7 bits (239), Expect = 2e-18
 Identities = 53/92 (57%), Positives = 56/92 (60%)
 Frame = -3

Query: 276 RAAFNNPERAVDYLYSGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXQTTVPHGGPNANPL 97
           RAAFNNPERAV+YLYSGI                                P GGPNANPL
Sbjct: 183 RAAFNNPERAVEYLYSGIPEQAEVPPVAQGPASGVAVNPPAQAQQPAAP-PSGGPNANPL 241

Query: 96  NLFPQGLPNMGSNASAGNLDFLRNSPQFQALR 1
           +LFPQGLP+ GSNA AGNLDFLRNS QFQALR
Sbjct: 242 DLFPQGLPSTGSNAGAGNLDFLRNSQQFQALR 273


>emb|CAB51544.1| RAD23 protein [Solanum lycopersicum var. cerasiforme]
          Length = 389

 Score = 96.3 bits (238), Expect = 2e-18
 Identities = 54/99 (54%), Positives = 56/99 (56%), Gaps = 7/99 (7%)
 Frame = -3

Query: 276 RAAFNNPERAVDYLYSGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXQTT-------VPHG 118
           RAA+NNPERAVDYLYSGI                                      VP  
Sbjct: 180 RAAYNNPERAVDYLYSGIPEQTEIPPVARAPAAPAVTAPASAQAINPAAQDASQLAVPSS 239

Query: 117 GPNANPLNLFPQGLPNMGSNASAGNLDFLRNSPQFQALR 1
           GPNANPL+LFPQGL N GSNA AGNLDFLRNSPQFQALR
Sbjct: 240 GPNANPLDLFPQGLTNAGSNAGAGNLDFLRNSPQFQALR 278


>dbj|BAC76393.1| RAD23-like protein [Arabidopsis thaliana]
          Length = 337

 Score = 94.7 bits (234), Expect = 7e-18
 Identities = 49/92 (53%), Positives = 53/92 (57%)
 Frame = -3

Query: 276 RAAFNNPERAVDYLYSGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXQTTVPHGGPNANPL 97
           RAAFNNPERAV+YLY+GI                                P  GPNANPL
Sbjct: 130 RAAFNNPERAVEYLYTGIPEQAEVPPVARPPASAGQPANPPAQTQQPAAAPASGPNANPL 189

Query: 96  NLFPQGLPNMGSNASAGNLDFLRNSPQFQALR 1
           +LFPQGLPN+G N  AG LDFLRNS QFQALR
Sbjct: 190 DLFPQGLPNVGGNPGAGTLDFLRNSQQFQALR 221


>ref|NP_186903.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
           gi|55976503|sp|Q84L31.2|RD23C_ARATH RecName:
           Full=Putative DNA repair protein RAD23-3; AltName:
           Full=RAD23-like protein 3; Short=AtRAD23-3
           gi|6957717|gb|AAF32461.1| putative RAD23 [Arabidopsis
           thaliana] gi|14517454|gb|AAK62617.1| AT3g02540/F16B3_17
           [Arabidopsis thaliana] gi|21360453|gb|AAM47342.1|
           AT3g02540/F16B3_17 [Arabidopsis thaliana]
           gi|30409724|dbj|BAC76392.1| RAD23-like protein
           [Arabidopsis thaliana] gi|110735092|gb|ABG89116.1|
           Rad23-1 [synthetic construct]
           gi|332640303|gb|AEE73824.1| putative DNA repair protein
           RAD23-3 [Arabidopsis thaliana]
          Length = 419

 Score = 94.7 bits (234), Expect = 7e-18
 Identities = 49/92 (53%), Positives = 53/92 (57%)
 Frame = -3

Query: 276 RAAFNNPERAVDYLYSGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXQTTVPHGGPNANPL 97
           RAAFNNPERAV+YLY+GI                                P  GPNANPL
Sbjct: 212 RAAFNNPERAVEYLYTGIPEQAEVPPVARPPASAGQPANPPAQTQQPAAAPASGPNANPL 271

Query: 96  NLFPQGLPNMGSNASAGNLDFLRNSPQFQALR 1
           +LFPQGLPN+G N  AG LDFLRNS QFQALR
Sbjct: 272 DLFPQGLPNVGGNPGAGTLDFLRNSQQFQALR 303